Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.47012 * 2 1 4 4 C 1.46903 * 110.99722 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46742 * 180.02562 * 4 3 2 6 6 C 1.53125 * 109.52222 * 175.00027 * 5 4 3 7 7 C 1.53033 * 109.28287 * 177.61979 * 6 5 4 8 8 N 1.46851 * 109.52231 * 300.82460 * 7 6 5 9 9 C 1.46898 * 110.99682 * 185.83477 * 8 7 6 10 10 C 1.53006 * 109.47006 * 170.00115 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48508 * 109.47394 * 329.99535 * 15 13 11 19 19 C 1.46846 * 111.19864 * 61.73920 * 8 7 6 20 20 C 1.53033 * 109.52460 * 298.25500 * 19 8 7 21 21 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46774 * 299.99844 * 1 2 3 23 23 H 1.09002 * 109.47110 * 59.99618 * 1 2 3 24 24 H 1.09000 * 109.46774 * 240.00156 * 2 1 3 25 25 H 1.09000 * 109.46857 * 119.99915 * 2 1 3 26 26 H 1.00895 * 110.99673 * 303.95414 * 3 2 1 27 27 H 1.09004 * 109.47114 * 60.00169 * 4 3 2 28 28 H 1.09000 * 109.47190 * 299.99976 * 4 3 2 29 29 H 1.08994 * 109.52566 * 54.87315 * 5 4 3 30 30 H 1.09005 * 109.50073 * 57.67955 * 6 5 4 31 31 H 1.08991 * 109.50379 * 297.56469 * 6 5 4 32 32 H 1.08989 * 109.46624 * 180.80484 * 7 6 5 33 33 H 1.09002 * 109.45127 * 60.82884 * 7 6 5 34 34 H 1.09001 * 109.47392 * 50.00413 * 9 8 7 35 35 H 1.09001 * 109.47520 * 290.00136 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 37 37 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 38 38 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46555 * 58.27646 * 19 8 7 40 40 H 1.09001 * 109.46296 * 178.24247 * 19 8 7 41 41 H 1.08997 * 109.50475 * 299.23909 * 20 19 8 42 42 H 1.09002 * 109.50799 * 179.12007 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9595 2.8798 0.0001 6 6 5.4850 2.9236 0.1252 7 6 5.9553 4.3787 0.0656 8 7 5.5331 4.9792 -1.2063 9 6 6.0851 6.3319 -1.3586 10 6 5.8369 6.8264 -2.7852 11 6 6.4038 8.2139 -2.9417 12 1 6.8919 8.6951 -2.1070 13 6 6.2985 8.8694 -4.1501 14 7 5.7037 8.2836 -5.1663 15 14 7.0005 10.5895 -4.3438 16 1 8.4116 10.5001 -4.7978 17 1 6.2040 11.3390 -5.3483 18 1 6.9441 11.2971 -3.0394 19 6 4.0697 4.9912 -1.3279 20 6 3.5432 3.5544 -1.3100 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6442 1.9012 -0.7813 27 1 3.8648 0.9204 -0.8909 28 1 3.8655 0.9201 0.8891 29 1 3.5097 3.4079 0.8407 30 1 5.9336 2.3623 -0.6945 31 1 5.7849 2.4829 1.0758 32 1 7.0421 4.4125 0.1400 33 1 5.5170 4.9360 0.8935 34 1 7.1572 6.3111 -1.1627 35 1 5.5996 7.0044 -0.6514 36 1 6.3226 6.1540 -3.4924 37 1 4.7650 6.8473 -2.9811 38 1 5.6292 8.7449 -6.0163 39 1 3.6404 5.5458 -0.4935 40 1 3.7871 5.4698 -2.2656 41 1 3.9612 3.0031 -2.1522 42 1 2.4557 3.5643 -1.3845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -43.453098 kcal Electronic energy + Delta-G solvation = -17435.974866 eV Core-core repulsion = 14834.702435 eV Total energy + Delta-G solvation = -2601.272431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25784 -37.73816 -35.76203 -34.49476 -32.05937 -31.59578 -30.26536 -27.27773 -25.49536 -24.36068 -23.03157 -22.57052 -21.70769 -20.54757 -18.59997 -16.98687 -16.68338 -16.56520 -16.03809 -15.93313 -15.30181 -15.20389 -14.89453 -14.54782 -14.26219 -14.15636 -13.68913 -13.26848 -13.09964 -13.00773 -12.85704 -12.55799 -12.48560 -12.39770 -12.11299 -12.05448 -11.85005 -11.64940 -11.45626 -11.32270 -11.09008 -10.94414 -10.53016 -9.36012 -9.14738 -8.20425 -6.31959 1.39617 1.41465 1.52403 2.39942 3.10149 3.12694 3.24003 3.83315 3.87252 3.99263 4.22678 4.28985 4.33552 4.40745 4.47781 4.50508 4.60822 4.62682 4.67135 4.71258 4.76766 4.91920 4.97123 4.98383 5.02423 5.06883 5.13024 5.15921 5.23362 5.25301 5.33737 5.44990 5.52950 5.67450 5.78966 6.10581 6.13714 6.34680 6.38370 6.44866 6.85130 7.37050 8.91759 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043536 B = 0.003910 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.989829 B = 7159.074093 C = 7618.269925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 N -0.701 5.701 4 C 0.073 3.927 5 C -0.078 4.078 6 C -0.101 4.101 7 C 0.053 3.947 8 N -0.550 5.550 9 C 0.078 3.922 10 C 0.038 3.962 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.057 3.943 20 C -0.102 4.102 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.341 0.659 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.016 0.984 36 H -0.009 1.009 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -15.505 11.889 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.334 5.334 4 C -0.056 4.056 5 C -0.097 4.097 6 C -0.140 4.140 7 C -0.075 4.075 8 N -0.275 5.275 9 C -0.049 4.049 10 C 0.000 4.000 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.071 4.071 20 C -0.139 4.139 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.160 0.840 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.009 0.991 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.301 -15.723 12.034 20.778 hybrid contribution 0.186 1.328 -0.896 1.613 sum -6.116 -14.395 11.138 19.201 Atomic orbital electron populations 1.21751 0.94285 1.02379 1.02133 1.21966 0.96294 0.88956 1.00540 1.60591 1.08113 1.14247 1.50417 1.21896 0.87512 0.95498 1.00701 1.21137 0.95544 0.95702 0.97313 1.21555 0.94833 0.94850 1.02728 1.22154 1.00420 0.95851 0.89048 1.61960 1.10042 1.21002 1.34519 1.21961 0.98441 0.87171 0.97328 1.18911 0.95012 0.94221 0.91832 1.21636 1.37563 1.01787 0.97451 0.92252 1.25978 0.95563 1.02672 0.95511 1.70108 1.44444 1.39749 1.02834 0.85417 0.78412 0.78781 0.78236 1.19665 1.20639 1.18764 1.22039 0.87466 0.97833 0.99800 1.21579 1.00250 0.93997 0.98117 0.90984 0.92364 0.92917 0.95349 0.90843 0.84005 0.95294 0.90260 0.91077 0.91693 0.89337 0.90722 0.95303 0.91843 0.96556 0.99084 0.98803 0.92736 0.95660 0.92968 0.92316 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.17 71.98 0.73 -1.26 16 2 C 0.05 0.80 6.41 86.30 0.55 1.35 16 3 N -0.70 -13.14 6.50 -513.86 -3.34 -16.48 16 4 C 0.07 1.39 5.15 86.30 0.44 1.83 16 5 C -0.08 -1.76 2.46 -10.71 -0.03 -1.78 16 6 C -0.10 -2.33 5.38 30.65 0.16 -2.16 16 7 C 0.05 1.54 5.46 86.32 0.47 2.02 16 8 N -0.55 -20.67 4.66 -896.37 -4.17 -24.84 16 9 C 0.08 3.48 4.90 86.31 0.42 3.90 16 10 C 0.04 2.08 4.90 29.85 0.15 2.22 16 11 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 15 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.06 2.00 5.29 86.32 0.46 2.46 16 20 C -0.10 -2.74 5.10 30.65 0.16 -2.59 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.34 6.42 7.06 -89.70 -0.63 5.79 16 27 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.10 8.01 -2.39 -0.02 2.08 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 2.73 7.99 -2.39 -0.02 2.71 16 35 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H -0.01 -0.37 6.43 -2.39 -0.02 -0.39 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 2.17 6.21 -2.39 -0.01 2.15 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.83 6.81 -2.39 -0.02 1.81 16 Total: -1.00 -64.96 325.76 -0.67 -65.63 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.32 Total: 11.50 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 4.22 Total: -25.24 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -7.23 Total: -98.84 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.96 -0.67 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.174 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds