Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.46906 * 2 1 4 4 C 1.46901 * 110.99754 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47283 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.50909 * 54.91576 * 5 4 3 7 7 C 1.53123 * 109.53281 * 294.82252 * 5 4 3 8 8 C 1.53123 * 109.16001 * 182.38522 * 7 5 4 9 9 C 1.53036 * 109.27788 * 57.65365 * 8 7 5 10 10 N 1.46842 * 109.52190 * 300.81892 * 9 8 7 11 11 C 1.46907 * 110.99676 * 185.84074 * 10 9 8 12 12 C 1.53000 * 109.46914 * 66.04932 * 11 10 9 13 13 C 1.50704 * 109.46662 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00268 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99556 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00511 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47005 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47432 * 119.99523 * 17 15 13 20 20 H 1.48500 * 109.47102 * 240.00254 * 17 15 13 21 21 C 1.46848 * 111.20069 * 61.74451 * 10 9 8 22 22 H 1.08996 * 109.47097 * 60.00131 * 1 2 3 23 23 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47220 * 299.99735 * 1 2 3 25 25 H 1.09000 * 109.46628 * 239.99799 * 2 1 3 26 26 H 1.09001 * 109.47002 * 120.00340 * 2 1 3 27 27 H 1.00902 * 110.99905 * 56.04771 * 3 2 1 28 28 H 1.08996 * 109.47222 * 59.99514 * 4 3 2 29 29 H 1.09005 * 109.47194 * 299.99557 * 4 3 2 30 30 H 1.09000 * 109.52311 * 62.47715 * 7 5 4 31 31 H 1.09007 * 109.52076 * 302.28828 * 7 5 4 32 32 H 1.09000 * 109.50367 * 297.70910 * 8 7 5 33 33 H 1.09006 * 109.50264 * 177.59249 * 8 7 5 34 34 H 1.09002 * 109.46126 * 60.83950 * 9 8 7 35 35 H 1.09000 * 109.45813 * 180.81566 * 9 8 7 36 36 H 1.09004 * 109.46587 * 186.04463 * 11 10 9 37 37 H 1.08994 * 109.47194 * 306.04470 * 11 10 9 38 38 H 1.08996 * 109.47342 * 299.99473 * 12 11 10 39 39 H 1.09003 * 109.47499 * 60.00054 * 12 11 10 40 40 H 0.97003 * 120.00374 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46014 * 58.27448 * 21 10 9 42 42 H 1.08991 * 109.46260 * 178.24823 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9595 2.8797 0.0000 6 1 3.5102 3.4074 0.8413 7 6 3.5403 3.5542 -1.3092 8 6 4.0675 4.9917 -1.3251 9 6 5.5890 4.9738 -1.1616 10 7 5.9386 4.3193 0.1055 11 6 7.3825 4.4065 0.3622 12 6 7.7728 5.8686 0.5879 13 6 9.2539 5.9580 0.8518 14 1 9.8564 5.0618 0.8575 15 6 9.8397 7.1841 1.0849 16 7 9.1063 8.2757 1.0764 17 14 11.6757 7.2952 1.4113 18 1 12.2696 5.9348 1.3664 19 1 12.3120 8.1479 0.3755 20 1 11.9049 7.8907 2.7522 21 6 5.4841 2.9230 0.1252 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6441 1.9012 0.7814 28 1 3.8647 0.9203 -0.8907 29 1 3.8655 0.9201 0.8892 30 1 2.4528 3.5641 -1.3818 31 1 3.9577 3.0037 -2.1524 32 1 3.6199 5.5526 -0.5047 33 1 3.8089 5.4636 -2.2731 34 1 6.0368 4.4245 -1.9899 35 1 5.9659 5.9965 -1.1581 36 1 7.6296 3.8234 1.2493 37 1 7.9284 4.0128 -0.4951 38 1 7.5257 6.4517 -0.2992 39 1 7.2269 6.2623 1.4453 40 1 9.5185 9.1384 1.2400 41 1 5.9325 2.3834 -0.7090 42 1 5.7848 2.4564 1.0631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = -43.308223 kcal Electronic energy + Delta-G solvation = -17442.907695 eV Core-core repulsion = 14841.641546 eV Total energy + Delta-G solvation = -2601.266149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24311 -37.63254 -35.77310 -34.38915 -32.77967 -31.27701 -30.01387 -26.85692 -25.87131 -24.20719 -23.11054 -22.86743 -21.39214 -20.57118 -18.60318 -16.93606 -16.59133 -16.42880 -16.23072 -15.85915 -15.39676 -15.20535 -14.74587 -14.64146 -14.27977 -14.06870 -13.76835 -13.23854 -13.15696 -13.07415 -12.83325 -12.52483 -12.46124 -12.30334 -12.03217 -11.95044 -11.90478 -11.66873 -11.46354 -11.32021 -11.08632 -10.93549 -10.53775 -9.32937 -9.15166 -8.20536 -6.32088 1.39536 1.40138 1.53463 2.39643 2.96389 3.12576 3.36061 3.85303 3.95200 4.03224 4.20362 4.31196 4.37293 4.38752 4.50732 4.50827 4.59535 4.64150 4.67020 4.68944 4.76744 4.87971 4.97689 5.01309 5.06433 5.09268 5.15134 5.18457 5.24140 5.36413 5.43356 5.46033 5.55246 5.67285 5.79124 6.09428 6.12047 6.34374 6.37622 6.49202 6.85242 7.36989 8.91856 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055622 B = 0.003797 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.275023 B = 7372.614886 C = 7661.084123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.693 5.693 4 C 0.074 3.926 5 C -0.073 4.073 6 H 0.070 0.930 7 C -0.094 4.094 8 C -0.112 4.112 9 C 0.055 3.945 10 N -0.549 5.549 11 C 0.079 3.921 12 C 0.037 3.963 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.061 3.939 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.344 0.656 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.017 0.983 38 H -0.006 1.006 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.029 0.971 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 -15.420 -3.445 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.325 5.325 4 C -0.056 4.056 5 C -0.092 4.092 6 H 0.088 0.912 7 C -0.131 4.131 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.274 5.274 11 C -0.048 4.048 12 C 0.000 4.000 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.067 4.067 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.162 0.838 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.199 -14.949 -3.737 21.644 hybrid contribution 1.751 -0.074 0.519 1.828 sum -13.448 -15.022 -3.217 20.417 Atomic orbital electron populations 1.21732 0.94074 1.02303 1.02252 1.21951 0.96382 0.88929 1.00403 1.60466 1.07440 1.14181 1.50406 1.21816 0.87989 0.95219 1.00534 1.21075 0.93297 0.95770 0.99042 0.91203 1.21428 1.01464 0.93905 0.96312 1.21592 0.93058 0.98337 1.01956 1.22095 0.97433 0.98523 0.89288 1.61906 1.15296 1.16226 1.33953 1.21959 0.85989 0.98302 0.98564 1.18915 0.94565 0.91595 0.94936 1.21657 0.94747 0.93353 1.48552 0.92247 1.25982 1.03452 0.95353 0.94971 1.70119 1.37722 0.98734 1.50578 0.85364 0.79019 0.78547 0.77884 1.18580 1.20294 1.20257 1.22109 0.95956 0.88115 1.00514 0.92370 0.91190 0.92608 0.91303 0.95284 0.83787 0.91119 0.94982 0.89972 0.92667 0.92151 0.90480 0.95628 0.93010 0.91893 0.96483 0.98785 0.99045 0.92732 0.95238 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.17 71.98 0.73 -1.02 16 2 C 0.05 0.76 6.40 86.31 0.55 1.31 16 3 N -0.69 -11.98 6.02 -513.89 -3.09 -15.07 16 4 C 0.07 1.44 5.08 86.30 0.44 1.87 16 5 C -0.07 -1.73 2.49 -10.74 -0.03 -1.76 16 6 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.09 -2.21 5.15 30.68 0.16 -2.05 16 8 C -0.11 -3.13 6.09 30.65 0.19 -2.95 16 9 C 0.05 1.95 5.29 86.33 0.46 2.41 16 10 N -0.55 -20.78 4.65 -896.37 -4.17 -24.95 16 11 C 0.08 3.52 4.90 86.30 0.42 3.94 16 12 C 0.04 2.06 4.91 29.85 0.15 2.21 16 13 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C 0.06 1.81 4.74 86.32 0.41 2.22 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.34 5.59 8.73 -89.69 -0.78 4.81 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 1.79 7.84 -2.39 -0.02 1.77 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.90 8.14 -2.38 -0.02 1.89 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 2.17 6.22 -2.39 -0.01 2.16 16 36 H 0.06 2.71 7.98 -2.39 -0.02 2.69 16 37 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 38 H -0.01 -0.36 6.44 -2.39 -0.02 -0.38 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 Total: -1.00 -64.65 327.99 -0.61 -65.26 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.17 Total: 10.37 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.17 Total: -24.99 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -6.98 Total: -97.62 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.65 -0.61 -65.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.952 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds