Wall clock time and date at job start Mon Mar 30 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.46929 * 2 1 4 4 C 1.46897 * 111.00088 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47444 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.49974 * 304.92221 * 5 4 3 7 7 C 1.53114 * 109.50212 * 64.99668 * 5 4 3 8 8 C 1.53116 * 109.16151 * 177.59623 * 7 5 4 9 9 C 1.53036 * 109.28144 * 302.35164 * 8 7 5 10 10 N 1.46840 * 109.52295 * 59.17509 * 9 8 7 11 11 C 1.46898 * 111.00086 * 174.16146 * 10 9 8 12 12 C 1.53006 * 109.47006 * 66.04921 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99809 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48493 * 109.47121 * 329.99876 * 17 15 13 21 21 C 1.46852 * 111.19878 * 298.25982 * 10 9 8 22 22 H 1.09001 * 109.47338 * 60.00204 * 1 2 3 23 23 H 1.09000 * 109.46773 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46935 * 299.99720 * 1 2 3 25 25 H 1.08999 * 109.47665 * 240.00148 * 2 1 3 26 26 H 1.09001 * 109.47338 * 119.99796 * 2 1 3 27 27 H 1.00903 * 111.00119 * 303.95293 * 3 2 1 28 28 H 1.09003 * 109.47194 * 60.00129 * 4 3 2 29 29 H 1.08998 * 109.47275 * 300.00229 * 4 3 2 30 30 H 1.09005 * 109.52186 * 57.69303 * 7 5 4 31 31 H 1.08999 * 109.52947 * 297.50480 * 7 5 4 32 32 H 1.09007 * 109.50468 * 182.40654 * 8 7 5 33 33 H 1.09001 * 109.50436 * 62.29211 * 8 7 5 34 34 H 1.08997 * 109.45827 * 299.16199 * 9 8 7 35 35 H 1.08997 * 109.45594 * 179.18816 * 9 8 7 36 36 H 1.09001 * 109.47392 * 306.05219 * 11 10 9 37 37 H 1.09001 * 109.47520 * 186.04942 * 11 10 9 38 38 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 39 39 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 40 40 H 0.97004 * 119.99097 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.45836 * 181.75698 * 21 10 9 42 42 H 1.08990 * 109.46120 * 301.72352 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4881 1.4243 0.0006 5 6 3.9594 2.8799 0.0012 6 1 3.5122 3.4076 -0.8413 7 6 3.5360 3.5538 1.3093 8 6 4.0631 4.9912 1.3277 9 6 5.5851 4.9734 1.1691 10 7 5.9389 4.3195 -0.0972 11 6 7.3834 4.4069 -0.3493 12 6 8.1352 3.5908 0.7043 13 6 9.6172 3.6809 0.4461 14 1 9.9859 4.2618 -0.3864 15 6 10.5022 3.0210 1.2720 16 7 11.7956 3.0993 1.0464 17 14 9.8643 2.0157 2.7114 18 1 9.6203 0.6190 2.2702 19 1 10.8706 2.0212 3.8036 20 1 8.5952 2.6080 3.2049 21 6 5.4844 2.9232 -0.1189 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6441 1.9014 -0.7814 28 1 3.8654 0.9203 -0.8892 29 1 3.8647 0.9205 0.8908 30 1 3.9506 3.0029 2.1537 31 1 2.4482 3.5638 1.3786 32 1 3.8014 5.4627 2.2751 33 1 3.6181 5.5526 0.5061 34 1 6.0302 4.4238 1.9984 35 1 5.9619 5.9962 1.1673 36 1 7.6993 5.4487 -0.2953 37 1 7.6039 4.0113 -1.3407 38 1 7.9148 3.9865 1.6957 39 1 7.8194 2.5490 0.6503 40 1 12.4182 2.6352 1.6277 41 1 5.7882 2.4570 -1.0562 42 1 5.9300 2.3833 0.7164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:03 Heat of formation + Delta-G solvation = -41.133861 kcal Electronic energy + Delta-G solvation = -17818.479702 eV Core-core repulsion = 15217.307840 eV Total energy + Delta-G solvation = -2601.171862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38793 -37.70803 -35.76070 -34.44332 -32.87495 -31.26806 -30.17809 -26.96704 -25.77783 -24.40692 -22.93436 -22.83730 -21.76605 -20.21179 -19.05020 -16.95217 -16.51454 -16.42607 -16.28384 -15.60051 -15.50581 -15.23793 -14.90282 -14.78023 -14.53405 -14.15658 -13.83013 -13.29825 -13.16935 -13.13909 -12.85213 -12.50606 -12.42957 -12.29725 -12.08964 -12.01162 -11.92150 -11.57872 -11.51512 -11.42686 -11.15323 -11.06189 -10.80795 -9.35342 -9.12744 -8.35212 -6.39052 1.27334 1.29308 1.40680 2.28815 2.95098 2.99352 3.35557 3.84260 3.95977 4.03936 4.20654 4.27661 4.36108 4.40259 4.48762 4.53096 4.55197 4.62391 4.64293 4.70158 4.77558 4.81394 4.95345 4.98863 5.02766 5.05431 5.13732 5.14957 5.24131 5.34846 5.36398 5.39824 5.43280 5.51962 5.58676 6.04297 6.09062 6.27873 6.30478 6.50547 6.69712 7.25490 8.81429 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.005308 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.600834 B = 5273.759020 C = 5778.568348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.689 5.689 4 C 0.070 3.930 5 C -0.069 4.069 6 H 0.082 0.918 7 C -0.099 4.099 8 C -0.109 4.109 9 C 0.047 3.953 10 N -0.534 5.534 11 C 0.076 3.924 12 C -0.034 4.034 13 C -0.530 4.530 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.256 1.256 21 C 0.057 3.943 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.346 0.654 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.729 -3.482 -0.382 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.321 5.321 4 C -0.060 4.060 5 C -0.088 4.088 6 H 0.100 0.900 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.081 4.081 10 N -0.256 5.256 11 C -0.052 4.052 12 C -0.073 4.073 13 C -0.568 4.568 14 H 0.055 0.945 15 C -0.189 4.189 16 N -0.588 5.588 17 Si 0.771 3.229 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.180 1.180 21 C -0.072 4.072 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.165 0.835 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -23.872 -3.216 -0.022 24.088 hybrid contribution 1.498 -1.141 0.265 1.901 sum -22.375 -4.357 0.242 22.796 Atomic orbital electron populations 1.21719 0.93741 1.02318 1.02398 1.21958 0.96604 0.89045 1.00227 1.60456 1.07119 1.14108 1.50399 1.21840 0.88183 0.95858 1.00154 1.21064 0.92926 0.95415 0.99421 0.89995 1.21462 1.01573 0.94708 0.95947 1.21583 0.92915 0.97653 1.02484 1.22180 0.97490 0.98711 0.89707 1.62309 1.14036 1.15766 1.33527 1.21928 0.85454 0.99650 0.98155 1.20027 0.94543 0.96197 0.96496 1.21391 0.91596 1.30608 1.13248 0.94524 1.25957 0.94836 0.97497 1.00604 1.70061 1.02995 1.45152 1.40613 0.85704 0.78781 0.79425 0.79007 1.19134 1.20512 1.17993 1.22104 0.95859 0.89025 1.00234 0.92274 0.91303 0.92294 0.95349 0.91778 0.83517 0.95146 0.92082 0.93907 0.89697 0.90428 0.90706 0.96576 0.91147 0.91860 0.91884 0.96868 0.96771 0.92395 0.91437 0.96272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 10.17 71.98 0.73 -1.06 16 2 C 0.05 0.81 6.41 86.30 0.55 1.36 16 3 N -0.69 -12.32 6.01 -513.88 -3.09 -15.40 16 4 C 0.07 1.49 5.08 86.30 0.44 1.93 16 5 C -0.07 -1.64 2.49 -10.74 -0.03 -1.67 16 6 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 7 C -0.10 -2.29 5.14 30.67 0.16 -2.14 16 8 C -0.11 -2.58 6.09 30.65 0.19 -2.39 16 9 C 0.05 1.47 5.05 86.33 0.44 1.91 16 10 N -0.53 -18.11 4.86 -896.39 -4.35 -22.47 16 11 C 0.08 3.12 5.30 86.31 0.46 3.58 16 12 C -0.03 -1.64 3.34 29.85 0.10 -1.54 16 13 C -0.53 -31.22 9.66 25.60 0.25 -30.98 16 14 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 15 C 0.01 0.49 5.47 84.65 0.46 0.96 16 16 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 17 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 21 C 0.06 1.76 4.12 86.32 0.36 2.11 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.35 5.39 8.73 -89.69 -0.78 4.60 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.09 8.14 -2.38 -0.02 1.08 16 31 H 0.08 1.75 7.83 -2.39 -0.02 1.73 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.02 0.57 6.75 -2.39 -0.02 0.55 16 35 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 36 H 0.06 2.63 8.06 -2.39 -0.02 2.61 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.01 0.64 5.74 -2.39 -0.01 0.63 16 39 H 0.01 0.68 5.93 -2.39 -0.01 0.66 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.07 2.11 8.12 -2.38 -0.02 2.09 16 42 H 0.02 0.67 6.61 -2.39 -0.02 0.66 16 Total: -1.00 -64.76 321.21 -1.04 -65.80 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.12 Total: 12.43 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 4.10 Total: -27.92 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -7.14 Total: -97.78 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -64.76 -1.04 -65.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.669 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds