Wall clock time and date at job start Mon Mar 30 2020 04:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47030 * 2 1 4 4 C 1.46903 * 110.99872 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46975 * 185.20003 * 4 3 2 6 6 H 1.09006 * 109.45409 * 303.34137 * 5 4 3 7 7 C 1.53035 * 109.46675 * 63.31582 * 5 4 3 8 8 C 1.53120 * 109.28149 * 179.19532 * 7 5 4 9 9 C 1.53122 * 109.16048 * 302.34879 * 8 7 5 10 10 C 1.53032 * 109.27990 * 57.65138 * 9 8 7 11 11 N 1.46849 * 109.46226 * 183.37009 * 5 4 3 12 12 C 1.46900 * 111.00010 * 54.14219 * 11 5 4 13 13 C 1.52999 * 109.47120 * 175.82364 * 12 11 5 14 14 C 1.50697 * 109.47434 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00366 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99764 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99905 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46805 * 269.99013 * 18 16 14 20 20 H 1.48497 * 109.47337 * 29.99433 * 18 16 14 21 21 H 1.48506 * 109.46916 * 149.99908 * 18 16 14 22 22 H 1.09003 * 109.47429 * 59.99644 * 1 2 3 23 23 H 1.09004 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47325 * 299.99651 * 1 2 3 25 25 H 1.09003 * 109.47265 * 240.00391 * 2 1 3 26 26 H 1.09003 * 109.47429 * 120.00356 * 2 1 3 27 27 H 1.00897 * 111.00649 * 303.95876 * 3 2 1 28 28 H 1.08996 * 109.46883 * 65.20066 * 4 3 2 29 29 H 1.08996 * 109.47477 * 305.19931 * 4 3 2 30 30 H 1.08999 * 109.50255 * 299.13782 * 7 5 4 31 31 H 1.08998 * 109.50310 * 59.21351 * 7 5 4 32 32 H 1.09002 * 109.52188 * 62.24720 * 8 7 5 33 33 H 1.08998 * 109.52198 * 182.43761 * 8 7 5 34 34 H 1.08997 * 109.50463 * 177.59695 * 9 8 7 35 35 H 1.09005 * 109.49992 * 297.67138 * 9 8 7 36 36 H 1.09003 * 109.45946 * 180.80630 * 10 9 8 37 37 H 1.09002 * 109.46498 * 60.83754 * 10 9 8 38 38 H 1.09003 * 109.47099 * 55.82748 * 12 11 5 39 39 H 1.08996 * 109.47374 * 295.82446 * 12 11 5 40 40 H 1.09006 * 109.47301 * 60.00027 * 13 12 11 41 41 H 1.09002 * 109.47471 * 300.00321 * 13 12 11 42 42 H 0.96993 * 120.00549 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9595 2.8738 0.1313 6 1 3.5322 3.4687 -0.6760 7 6 3.5028 3.4392 1.4781 8 6 3.9939 4.8832 1.6130 9 6 5.5188 4.9102 1.4773 10 6 5.9171 4.3022 0.1306 11 7 5.4250 2.9209 0.0509 12 6 5.9068 2.2600 -1.1693 13 6 7.4251 2.4197 -1.2703 14 6 7.9194 1.7422 -2.5224 15 1 7.2204 1.2476 -3.1806 16 6 9.2638 1.7538 -2.8277 17 7 10.1149 2.3565 -2.0265 18 14 9.8763 0.9146 -4.3802 19 1 10.2109 -0.5005 -4.0788 20 1 8.8168 0.9622 -5.4196 21 1 11.0883 1.6149 -4.8762 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6441 1.9014 -0.7813 28 1 3.8631 1.0029 -0.9320 29 1 3.8668 0.8419 0.8406 30 1 2.4143 3.4185 1.5311 31 1 3.9179 2.8361 2.2855 32 1 3.5476 5.4945 0.8286 33 1 3.7079 5.2755 2.5889 34 1 5.8707 5.9404 1.5299 35 1 5.9663 4.3312 2.2852 36 1 7.0031 4.3069 0.0370 37 1 5.4806 4.8904 -0.6767 38 1 5.4349 2.7157 -2.0399 39 1 5.6546 1.2003 -1.1323 40 1 7.8971 1.9640 -0.3997 41 1 7.6774 3.4794 -1.3072 42 1 9.7969 2.7926 -1.2206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:14 Heat of formation + Delta-G solvation = -21.782059 kcal Electronic energy + Delta-G solvation = -17941.675676 eV Core-core repulsion = 15341.342972 eV Total energy + Delta-G solvation = -2600.332705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17683 -36.31177 -34.36781 -32.70919 -31.99118 -29.23876 -28.78394 -25.14671 -24.52714 -23.13877 -22.11184 -20.96582 -20.35532 -19.30066 -16.80221 -15.95465 -15.54570 -15.28635 -14.31897 -14.21328 -13.99427 -13.87450 -13.68220 -13.32681 -13.07967 -12.74977 -12.24202 -12.09304 -11.93741 -11.62781 -11.46746 -11.30569 -11.22854 -10.87276 -10.71791 -10.55691 -10.36851 -10.13745 -10.06912 -9.87152 -9.44179 -8.56786 -8.40083 -8.29575 -7.73434 -6.35315 -4.03910 3.43462 3.47070 3.62719 3.97348 4.51168 4.63727 4.91788 5.03197 5.07322 5.12894 5.19367 5.34772 5.39498 5.42511 5.52085 5.61387 5.68828 5.77293 5.84779 5.88533 5.97894 6.01925 6.07847 6.10346 6.13554 6.21723 6.28388 6.38716 6.41455 6.54601 6.65508 6.81964 6.96173 7.30737 7.33861 7.47599 7.70336 7.77378 8.25329 8.47357 8.89953 9.68188 11.05845 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.005906 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.388846 B = 4740.158796 C = 5986.392169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.689 5.689 4 C 0.061 3.939 5 C 0.091 3.909 6 H 0.030 0.970 7 C -0.099 4.099 8 C -0.121 4.121 9 C -0.117 4.117 10 C 0.055 3.945 11 N -0.535 5.535 12 C 0.068 3.932 13 C 0.010 3.990 14 C -0.602 4.602 15 H 0.046 0.954 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 1.071 2.929 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.284 1.284 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.336 0.664 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 0.726 5.700 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.320 5.320 4 C -0.068 4.068 5 C -0.018 4.018 6 H 0.048 0.952 7 C -0.137 4.137 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.073 4.073 11 N -0.261 5.261 12 C -0.059 4.059 13 C -0.027 4.027 14 C -0.641 4.641 15 H 0.065 0.935 16 C -0.188 4.188 17 N -0.549 5.549 18 Si 0.899 3.101 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.210 1.210 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.884 0.200 5.900 16.012 hybrid contribution -1.503 0.466 -0.823 1.776 sum -16.387 0.666 5.077 17.169 Atomic orbital electron populations 1.21760 0.95140 1.01522 1.02231 1.21895 0.95383 0.89661 1.00619 1.60431 1.08480 1.13399 1.49713 1.22056 0.86475 0.96954 1.01282 1.21489 0.88494 0.94777 0.97055 0.95202 1.21488 1.00395 0.95077 0.96701 1.21608 0.96168 0.97245 1.00871 1.21611 0.95652 0.99950 0.98257 1.22123 1.01513 0.88077 0.95611 1.62010 1.07641 1.16494 1.39914 1.22203 0.98645 0.97598 0.87437 1.19327 0.89545 0.96513 0.97314 1.22023 0.95235 1.38548 1.08325 0.93531 1.25814 0.93348 0.96514 1.03100 1.70737 1.37324 1.33314 1.13526 0.83519 0.75617 0.76115 0.74800 1.21433 1.21598 1.20968 0.92982 0.92348 0.91901 0.95406 0.91025 0.84649 0.94467 0.90284 0.91012 0.91701 0.92805 0.92369 0.92167 0.91313 0.89472 0.95781 0.96473 0.91697 0.96602 0.97145 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.17 37.15 0.38 -0.90 16 2 C 0.05 0.57 6.40 -3.83 -0.02 0.55 16 3 N -0.69 -8.27 5.87 -113.78 -0.67 -8.94 16 4 C 0.06 0.89 4.78 -3.82 -0.02 0.87 16 5 C 0.09 1.41 2.11 -67.72 -0.14 1.26 16 6 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 7 C -0.10 -1.34 5.23 -26.65 -0.14 -1.48 16 8 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 9 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 10 C 0.05 0.97 5.03 -3.83 -0.02 0.95 16 11 N -0.54 -9.92 4.60 -226.69 -1.04 -10.97 16 12 C 0.07 1.47 4.38 -3.82 -0.02 1.46 16 13 C 0.01 0.27 3.78 -27.88 -0.11 0.16 16 14 C -0.60 -17.44 9.11 -34.44 -0.31 -17.75 16 15 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 17 N -0.91 -28.28 13.65 55.43 0.76 -27.53 16 18 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.34 3.79 8.79 -39.29 -0.35 3.44 16 28 H 0.04 0.60 6.22 -51.93 -0.32 0.27 16 29 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.74 5.84 -51.93 -0.30 1.43 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 1.41 6.40 -51.93 -0.33 1.08 16 40 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 41 H 0.01 0.28 6.06 -51.93 -0.31 -0.03 16 42 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -30.18 321.85 -9.86 -40.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.85 Total: 0.06 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.82 Total: -18.08 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.95 Total: -47.43 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.18 -9.86 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.253 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds