Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47179 * 2 1 4 4 C 1.52998 * 109.47643 * 120.00416 * 2 1 3 5 5 C 1.52999 * 109.47371 * 185.00324 * 4 2 1 6 6 N 1.46902 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.46895 * 110.99711 * 169.99528 * 6 5 4 8 8 C 1.46899 * 111.00138 * 293.95289 * 6 5 4 9 9 N 1.46902 * 109.47005 * 240.00225 * 2 1 3 10 10 C 1.46902 * 110.99745 * 84.99786 * 9 2 1 11 11 C 1.53007 * 109.47243 * 175.44261 * 10 9 2 12 12 C 1.50705 * 115.55758 * 321.10258 * 11 10 9 13 13 H 1.07998 * 120.00082 * 99.65686 * 12 11 10 14 14 C 1.37877 * 119.99764 * 279.65187 * 12 11 10 15 15 N 1.31513 * 119.99922 * 8.62268 * 14 12 11 16 16 Si 1.86803 * 119.99801 * 188.62032 * 14 12 11 17 17 H 1.48501 * 109.47079 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47089 * 119.99934 * 16 14 12 19 19 H 1.48497 * 109.46858 * 240.00204 * 16 14 12 20 20 C 1.52994 * 117.49979 * 175.41245 * 11 10 9 21 21 C 1.53008 * 60.03161 * 252.49957 * 20 11 10 22 22 H 1.09002 * 109.46845 * 299.99413 * 1 2 3 23 23 H 1.08997 * 109.47493 * 59.99771 * 1 2 3 24 24 H 1.09009 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46775 * 304.99852 * 4 2 1 26 26 H 1.08997 * 109.47358 * 64.99580 * 4 2 1 27 27 H 1.09003 * 109.46786 * 299.99522 * 5 4 2 28 28 H 1.08997 * 109.47487 * 59.99336 * 5 4 2 29 29 H 1.09003 * 109.47662 * 60.00383 * 7 6 5 30 30 H 1.08998 * 109.46991 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47590 * 300.00073 * 7 6 5 32 32 H 1.08993 * 109.47226 * 59.99719 * 8 6 5 33 33 H 1.08992 * 109.47067 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.46734 * 299.99956 * 8 6 5 35 35 H 1.00898 * 111.00341 * 321.04329 * 9 2 1 36 36 H 1.09001 * 109.47578 * 55.44397 * 10 9 2 37 37 H 1.09000 * 109.47432 * 295.44387 * 10 9 2 38 38 H 0.97000 * 119.99233 * 180.02562 * 15 14 12 39 39 H 1.08993 * 117.50043 * 359.97438 * 20 11 10 40 40 H 1.08994 * 117.49914 * 145.00347 * 20 11 10 41 41 H 1.09000 * 117.49756 * 107.50057 * 21 20 11 42 42 H 1.08997 * 117.49769 * 252.52451 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 7 4.0546 -1.3053 2.5133 7 6 5.5181 -1.4293 2.4889 8 6 3.6041 -0.6245 3.7345 9 7 2.0196 -0.6925 -1.1995 10 6 2.0823 0.2227 -2.3469 11 6 2.7016 -0.5017 -3.5439 12 6 3.8444 -1.4299 -3.2220 13 1 3.6716 -2.4933 -3.1465 14 6 5.1106 -0.9214 -3.0239 15 7 5.2924 0.3788 -2.9472 16 14 6.5677 -2.0794 -2.8646 17 1 6.0997 -3.4835 -2.9862 18 1 7.5496 -1.7905 -3.9405 19 1 7.2121 -1.8848 -1.5410 20 6 2.7565 0.2516 -4.8744 21 6 1.7677 -0.9013 -4.6890 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6055 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2055 27 1 3.9995 -1.0727 0.4258 28 1 3.8532 0.4370 1.3572 29 1 5.9663 -0.4364 2.4508 30 1 5.8540 -1.9456 3.3881 31 1 5.8200 -1.9982 1.6095 32 1 2.5146 -0.6083 3.7606 33 1 3.9809 -1.1572 4.6075 34 1 3.9829 0.3975 3.7415 35 1 1.4495 -1.4979 -1.4101 36 1 2.6941 1.0872 -2.0892 37 1 1.0758 0.5535 -2.6033 38 1 6.1833 0.7365 -2.8082 39 1 2.3511 1.2630 -4.8972 40 1 3.6193 0.0761 -5.5168 41 1 0.7122 -0.6480 -4.5897 42 1 1.9803 -1.8353 -5.2092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = 22.744587 kcal Electronic energy + Delta-G solvation = -18272.661383 eV Core-core repulsion = 15674.259499 eV Total energy + Delta-G solvation = -2598.401884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.86726 -36.81835 -35.33498 -31.75918 -30.73825 -28.54568 -27.33318 -25.43615 -24.52616 -23.61095 -21.10771 -20.73116 -19.98190 -18.87750 -16.04875 -15.24425 -15.04311 -14.81206 -14.48007 -14.35459 -14.04607 -13.38110 -13.22429 -12.73697 -12.50788 -12.21589 -12.10232 -11.77102 -11.53863 -11.48443 -11.38092 -11.09557 -10.89506 -10.61480 -10.50265 -10.38765 -10.28923 -10.16779 -10.06483 -9.36395 -8.71466 -8.26154 -8.03220 -7.96474 -7.25554 -5.86057 -3.84545 3.37919 3.46302 3.51095 4.30008 4.55412 4.98282 5.30465 5.38265 5.41745 5.45872 5.50617 5.56957 5.63595 5.72574 5.77596 5.84882 5.98317 6.05148 6.11494 6.17636 6.20243 6.22548 6.31049 6.37786 6.49254 6.60318 6.69752 6.74017 6.78999 6.84183 7.05226 7.14994 7.40547 7.42907 7.49811 7.56417 8.06221 8.18732 8.41048 8.65491 9.10782 9.77094 11.24658 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.009504 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.824123 B = 2945.268024 C = 4305.204797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.094 4.094 5 C 0.061 3.939 6 N -0.549 5.549 7 C 0.027 3.973 8 C 0.023 3.977 9 N -0.647 5.647 10 C 0.112 3.888 11 C 0.052 3.948 12 C -0.460 4.460 13 H 0.056 0.944 14 C 0.076 3.924 15 N -0.881 5.881 16 Si 0.881 3.119 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.286 1.286 20 C -0.166 4.166 21 C -0.218 4.218 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.331 0.669 36 H 0.070 0.930 37 H -0.011 1.011 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -0.078 8.872 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.133 4.133 5 C -0.066 4.066 6 N -0.273 5.273 7 C -0.122 4.122 8 C -0.126 4.126 9 N -0.276 5.276 10 C -0.017 4.017 11 C 0.051 3.949 12 C -0.498 4.498 13 H 0.074 0.926 14 C -0.126 4.126 15 N -0.519 5.519 16 Si 0.710 3.290 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.213 1.213 20 C -0.204 4.204 21 C -0.255 4.255 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.148 0.852 36 H 0.088 0.912 37 H 0.007 0.993 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.727 -0.331 9.062 10.226 hybrid contribution 0.272 0.529 -0.164 0.617 sum -4.455 0.198 8.899 9.954 Atomic orbital electron populations 1.22525 0.98558 1.01536 1.01205 1.21556 0.91186 0.98067 0.92177 0.91349 1.21490 0.94985 1.00975 0.95814 1.22141 0.95723 0.95990 0.92729 1.62030 1.10716 1.51786 1.02775 1.22329 0.87581 0.99928 1.02340 1.22395 1.01101 0.96189 0.92892 1.60318 1.55570 1.08780 1.02968 1.21452 0.94440 0.95094 0.90723 1.18941 0.94438 0.96602 0.84911 1.20167 0.90651 0.92005 1.47009 0.92552 1.24801 0.98276 0.94593 0.94927 1.70020 1.21351 1.10923 1.49598 0.86723 0.83320 0.81699 0.77303 1.19892 1.21564 1.21283 1.22544 0.99690 0.93308 1.04898 1.23060 0.94177 0.99203 1.09089 0.93108 0.93061 0.92752 0.93224 0.91516 0.87889 0.95785 0.95989 0.92144 0.91062 0.91432 0.92214 0.96216 0.85170 0.91201 0.99268 0.93705 0.92218 0.90328 0.92144 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.16 37.15 0.34 -2.15 16 2 C 0.08 1.35 2.59 -67.72 -0.18 1.17 16 3 H 0.07 1.21 7.73 -51.92 -0.40 0.81 16 4 C -0.09 -1.46 4.82 -26.73 -0.13 -1.59 16 5 C 0.06 1.08 4.85 -3.82 -0.02 1.06 16 6 N -0.55 -8.69 5.02 -251.27 -1.26 -9.95 16 7 C 0.03 0.40 9.57 60.06 0.57 0.98 16 8 C 0.02 0.29 9.32 60.06 0.56 0.85 16 9 N -0.65 -12.76 4.98 -106.72 -0.53 -13.29 16 10 C 0.11 2.45 5.59 -3.82 -0.02 2.43 16 11 C 0.05 1.25 1.65 -155.62 -0.26 0.99 16 12 C -0.46 -12.26 8.11 -34.44 -0.28 -12.54 16 13 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 14 C 0.08 2.06 5.41 -17.82 -0.10 1.96 16 15 N -0.88 -24.74 13.20 55.43 0.73 -24.01 16 16 Si 0.88 21.39 29.55 -169.99 -5.02 16.37 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.17 -3.89 9.79 -26.73 -0.26 -4.15 16 21 C -0.22 -4.73 9.89 -26.69 -0.26 -4.99 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 24 H 0.05 0.72 8.13 -51.92 -0.42 0.30 16 25 H 0.05 0.68 6.55 -51.93 -0.34 0.34 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.10 2.19 7.67 -51.93 -0.40 1.80 16 28 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 32 H 0.07 0.81 6.47 -51.93 -0.34 0.48 16 33 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.33 6.33 8.52 -39.29 -0.33 6.00 16 36 H 0.07 1.71 7.94 -51.93 -0.41 1.30 16 37 H -0.01 -0.22 7.35 -51.93 -0.38 -0.60 16 38 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -27.33 336.41 -9.07 -36.41 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.03 Total: 5.38 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.03 Total: -15.98 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -1.06 Total: -47.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.33 -9.07 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.150 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds