Wall clock time and date at job start Mon Mar 30 2020 03:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47179 * 2 1 4 4 C 1.52998 * 109.47643 * 120.00416 * 2 1 3 5 5 C 1.52999 * 109.47371 * 185.00324 * 4 2 1 6 6 N 1.46902 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.46895 * 110.99711 * 169.99528 * 6 5 4 8 8 C 1.46899 * 111.00138 * 293.95289 * 6 5 4 9 9 N 1.46902 * 109.47005 * 240.00225 * 2 1 3 10 10 C 1.46902 * 110.99745 * 84.99786 * 9 2 1 11 11 C 1.53007 * 109.47243 * 175.44261 * 10 9 2 12 12 C 1.50705 * 115.55758 * 321.10258 * 11 10 9 13 13 H 1.07998 * 120.00082 * 99.65686 * 12 11 10 14 14 C 1.37877 * 119.99764 * 279.65187 * 12 11 10 15 15 N 1.31513 * 119.99922 * 8.62268 * 14 12 11 16 16 Si 1.86803 * 119.99801 * 188.62032 * 14 12 11 17 17 H 1.48501 * 109.47079 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47089 * 119.99934 * 16 14 12 19 19 H 1.48497 * 109.46858 * 240.00204 * 16 14 12 20 20 C 1.52994 * 117.49979 * 175.41245 * 11 10 9 21 21 C 1.53008 * 60.03161 * 252.49957 * 20 11 10 22 22 H 1.09002 * 109.46845 * 299.99413 * 1 2 3 23 23 H 1.08997 * 109.47493 * 59.99771 * 1 2 3 24 24 H 1.09009 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46775 * 304.99852 * 4 2 1 26 26 H 1.08997 * 109.47358 * 64.99580 * 4 2 1 27 27 H 1.09003 * 109.46786 * 299.99522 * 5 4 2 28 28 H 1.08997 * 109.47487 * 59.99336 * 5 4 2 29 29 H 1.09003 * 109.47662 * 60.00383 * 7 6 5 30 30 H 1.08998 * 109.46991 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47590 * 300.00073 * 7 6 5 32 32 H 1.08993 * 109.47226 * 59.99719 * 8 6 5 33 33 H 1.08992 * 109.47067 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.46734 * 299.99956 * 8 6 5 35 35 H 1.00898 * 111.00341 * 321.04329 * 9 2 1 36 36 H 1.09001 * 109.47578 * 55.44397 * 10 9 2 37 37 H 1.09000 * 109.47432 * 295.44387 * 10 9 2 38 38 H 0.97000 * 119.99233 * 180.02562 * 15 14 12 39 39 H 1.08993 * 117.50043 * 359.97438 * 20 11 10 40 40 H 1.08994 * 117.49914 * 145.00347 * 20 11 10 41 41 H 1.09000 * 117.49756 * 107.50057 * 21 20 11 42 42 H 1.08997 * 117.49769 * 252.52451 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 7 4.0546 -1.3053 2.5133 7 6 5.5181 -1.4293 2.4889 8 6 3.6041 -0.6245 3.7345 9 7 2.0196 -0.6925 -1.1995 10 6 2.0823 0.2227 -2.3469 11 6 2.7016 -0.5017 -3.5439 12 6 3.8444 -1.4299 -3.2220 13 1 3.6716 -2.4933 -3.1465 14 6 5.1106 -0.9214 -3.0239 15 7 5.2924 0.3788 -2.9472 16 14 6.5677 -2.0794 -2.8646 17 1 6.0997 -3.4835 -2.9862 18 1 7.5496 -1.7905 -3.9405 19 1 7.2121 -1.8848 -1.5410 20 6 2.7565 0.2516 -4.8744 21 6 1.7677 -0.9013 -4.6890 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6055 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2055 27 1 3.9995 -1.0727 0.4258 28 1 3.8532 0.4370 1.3572 29 1 5.9663 -0.4364 2.4508 30 1 5.8540 -1.9456 3.3881 31 1 5.8200 -1.9982 1.6095 32 1 2.5146 -0.6083 3.7606 33 1 3.9809 -1.1572 4.6075 34 1 3.9829 0.3975 3.7415 35 1 1.4495 -1.4979 -1.4101 36 1 2.6941 1.0872 -2.0892 37 1 1.0758 0.5535 -2.6033 38 1 6.1833 0.7365 -2.8082 39 1 2.3511 1.2630 -4.8972 40 1 3.6193 0.0761 -5.5168 41 1 0.7122 -0.6480 -4.5897 42 1 1.9803 -1.8353 -5.2092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:10 Heat of formation + Delta-G solvation = 6.007965 kcal Electronic energy + Delta-G solvation = -18273.387137 eV Core-core repulsion = 15674.259499 eV Total energy + Delta-G solvation = -2599.127639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31100 -38.38834 -36.82059 -33.83994 -32.21914 -29.81993 -28.44784 -27.45166 -26.01361 -25.07212 -22.90417 -22.03940 -21.41360 -20.73997 -17.95146 -16.65058 -16.56536 -16.31016 -16.15223 -15.76658 -15.51620 -14.97085 -14.81776 -14.18555 -13.93432 -13.57849 -13.38866 -13.22618 -13.20382 -12.89843 -12.75577 -12.66031 -12.55682 -12.46148 -12.30454 -11.95587 -11.75428 -11.66826 -11.51469 -11.20571 -10.65199 -10.29393 -9.84435 -9.28906 -8.77746 -7.95671 -5.97546 1.40961 1.45145 1.53847 2.52208 3.07608 3.35114 3.46095 3.65351 4.05571 4.21495 4.26362 4.37796 4.42542 4.46703 4.53602 4.57482 4.58891 4.73826 4.77203 4.79747 4.82280 4.84537 4.94959 4.99605 5.02054 5.03651 5.10035 5.21448 5.30051 5.35884 5.41285 5.45106 5.65272 5.74693 5.94330 6.10673 6.21548 6.48234 6.68906 6.93468 7.03935 7.65803 9.14019 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.009504 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.824123 B = 2945.268024 C = 4305.204797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 H 0.051 0.949 4 C -0.083 4.083 5 C 0.071 3.929 6 N -0.558 5.558 7 C 0.027 3.973 8 C 0.023 3.977 9 N -0.663 5.663 10 C 0.130 3.870 11 C 0.023 3.977 12 C -0.462 4.462 13 H 0.045 0.955 14 C 0.035 3.965 15 N -0.906 5.906 16 Si 0.930 3.070 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.174 4.174 21 C -0.190 4.190 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.008 0.992 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.019 0.981 35 H 0.335 0.665 36 H 0.035 0.965 37 H 0.007 0.993 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -0.666 10.201 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.029 4.029 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.057 4.057 6 N -0.282 5.282 7 C -0.122 4.122 8 C -0.125 4.125 9 N -0.292 5.292 10 C 0.000 4.000 11 C 0.023 3.977 12 C -0.500 4.500 13 H 0.063 0.937 14 C -0.164 4.164 15 N -0.545 5.545 16 Si 0.758 3.242 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.213 4.213 21 C -0.227 4.227 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.273 -0.932 10.397 12.178 hybrid contribution 0.750 0.695 -0.555 1.163 sum -5.523 -0.237 9.842 11.288 Atomic orbital electron populations 1.22386 0.95819 1.02446 1.02069 1.21579 0.93302 0.96854 0.91137 0.93037 1.21409 0.93333 1.01009 0.96334 1.21912 0.97085 0.94557 0.92123 1.62052 1.10979 1.51972 1.03164 1.22345 0.87496 0.99650 1.02693 1.22483 1.01909 0.96168 0.91958 1.60204 1.56832 1.08983 1.03220 1.21101 0.94281 0.93965 0.90626 1.19091 0.95184 0.97303 0.86146 1.20337 0.91726 0.91867 1.46081 0.93687 1.25336 1.00285 0.95600 0.95193 1.70120 1.21377 1.12071 1.50981 0.85947 0.80962 0.80352 0.76950 1.19537 1.21510 1.21434 1.22471 0.99934 0.94575 1.04287 1.23046 0.95053 0.98243 1.06373 0.90900 0.93549 0.91767 0.90556 0.91574 0.92325 0.97375 0.96483 0.89365 0.93242 0.90226 0.90167 0.96259 0.84731 0.94620 0.97561 0.94104 0.91200 0.92529 0.89347 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.16 71.98 0.66 -3.56 16 2 C 0.08 2.62 2.59 44.91 0.12 2.74 16 3 H 0.05 1.82 7.73 -2.38 -0.02 1.80 16 4 C -0.08 -2.45 4.82 30.59 0.15 -2.30 16 5 C 0.07 2.52 4.85 86.30 0.42 2.93 16 6 N -0.56 -17.07 5.02 -948.89 -4.76 -21.84 16 7 C 0.03 0.79 9.57 127.69 1.22 2.01 16 8 C 0.02 0.53 9.32 127.69 1.19 1.72 16 9 N -0.66 -25.99 4.98 -491.55 -2.45 -28.44 16 10 C 0.13 5.68 5.59 86.31 0.48 6.16 16 11 C 0.02 1.13 1.65 -52.90 -0.09 1.04 16 12 C -0.46 -24.89 8.11 25.60 0.21 -24.69 16 13 H 0.04 2.48 7.83 -2.91 -0.02 2.45 16 14 C 0.03 1.93 5.41 84.65 0.46 2.39 16 15 N -0.91 -52.29 13.20 21.45 0.28 -52.01 16 16 Si 0.93 44.81 29.55 68.60 2.03 46.84 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 20 C -0.17 -8.14 9.79 30.59 0.30 -7.84 16 21 C -0.19 -7.92 9.89 30.62 0.30 -7.62 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.21 7.54 -2.39 -0.02 1.19 16 24 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 25 H 0.08 1.88 6.55 -2.39 -0.02 1.86 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 2.60 7.67 -2.39 -0.02 2.58 16 28 H 0.01 0.30 8.12 -2.39 -0.02 0.28 16 29 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 31 H 0.05 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.08 1.66 6.47 -2.39 -0.02 1.64 16 33 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 34 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.33 12.51 8.52 -89.70 -0.76 11.74 16 36 H 0.04 1.79 7.94 -2.39 -0.02 1.77 16 37 H 0.01 0.26 7.35 -2.39 -0.02 0.24 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.09 3.20 8.08 -2.39 -0.02 3.18 16 42 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.30 336.41 0.71 -58.59 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.19 Total: 23.85 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 5.42 Total: -27.00 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -6.93 Total: -102.28 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -59.30 0.71 -58.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.602 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds