Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47022 * 239.99976 * 2 1 3 5 5 C 1.52999 * 109.47102 * 174.06559 * 4 2 1 6 6 N 1.46903 * 109.46944 * 185.01647 * 5 4 2 7 7 C 1.46904 * 111.00191 * 66.04697 * 6 5 4 8 8 C 1.46905 * 110.99682 * 190.00007 * 6 5 4 9 9 N 1.46901 * 109.46888 * 120.00278 * 2 1 3 10 10 C 1.46899 * 110.99826 * 278.72425 * 9 2 1 11 11 C 1.52999 * 109.46939 * 174.64841 * 10 9 2 12 12 C 1.50704 * 115.55073 * 39.53851 * 11 10 9 13 13 H 1.07992 * 120.00405 * 265.20567 * 12 11 10 14 14 C 1.37880 * 119.99536 * 85.20280 * 12 11 10 15 15 N 1.31510 * 119.99858 * 184.70580 * 14 12 11 16 16 Si 1.86804 * 120.00015 * 4.70831 * 14 12 11 17 17 H 1.48502 * 109.47180 * 94.49076 * 16 14 12 18 18 H 1.48503 * 109.46564 * 214.48806 * 16 14 12 19 19 H 1.48503 * 109.47241 * 334.48531 * 16 14 12 20 20 C 1.52999 * 117.49838 * 253.83404 * 11 10 9 21 21 C 1.53000 * 60.00021 * 252.50861 * 20 11 10 22 22 H 1.09001 * 109.47001 * 59.99931 * 1 2 3 23 23 H 1.08996 * 109.47530 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47247 * 300.00306 * 1 2 3 25 25 H 1.09004 * 109.47429 * 294.07084 * 4 2 1 26 26 H 1.09007 * 109.46928 * 54.06827 * 4 2 1 27 27 H 1.08997 * 109.47179 * 305.01406 * 5 4 2 28 28 H 1.09000 * 109.46999 * 65.01834 * 5 4 2 29 29 H 1.08999 * 109.46792 * 60.00244 * 7 6 5 30 30 H 1.09003 * 109.46699 * 179.97438 * 7 6 5 31 31 H 1.08992 * 109.46715 * 300.00020 * 7 6 5 32 32 H 1.08993 * 109.47011 * 60.00383 * 8 6 5 33 33 H 1.09003 * 109.46658 * 180.02562 * 8 6 5 34 34 H 1.08995 * 109.47267 * 299.99490 * 8 6 5 35 35 H 1.00900 * 110.99962 * 154.77377 * 9 2 1 36 36 H 1.08994 * 109.47437 * 294.64857 * 10 9 2 37 37 H 1.08998 * 109.46711 * 54.65439 * 10 9 2 38 38 H 0.96999 * 119.99940 * 180.02562 * 15 14 12 39 39 H 1.09003 * 117.50323 * 0.02562 * 20 11 10 40 40 H 1.09010 * 117.49706 * 145.02205 * 20 11 10 41 41 H 1.09000 * 117.50206 * 252.50850 * 21 20 11 42 42 H 1.09005 * 117.51509 * 107.47896 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5627 -0.5934 -1.3261 6 7 4.0405 -1.1809 -2.5849 7 6 3.5661 -0.4075 -3.7403 8 6 5.5053 -1.2920 -2.5913 9 7 2.0196 -0.6926 1.1994 10 6 1.9989 0.1985 2.3671 11 6 2.3869 -0.5916 3.6185 12 6 3.4937 -1.5978 3.4348 13 1 3.2557 -2.6306 3.2274 14 6 4.8102 -1.1997 3.5314 15 7 5.7762 -2.0559 3.2801 16 14 5.2217 0.5560 4.0193 17 1 5.4531 0.6212 5.4847 18 1 6.4476 0.9938 3.3046 19 1 4.0916 1.4484 3.6562 20 6 1.2730 -0.9390 4.6082 21 6 2.3061 0.1319 4.9642 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.7659 -1.7750 -1.1978 26 1 1.5924 -0.2723 -2.1361 27 1 3.8412 0.4597 -1.2878 28 1 4.0143 -1.1195 -0.4851 29 1 3.9360 0.6153 -3.6694 30 1 3.9346 -0.8640 -4.6590 31 1 2.4762 -0.4000 -3.7496 32 1 5.8250 -1.9275 -1.7655 33 1 5.8323 -1.7295 -3.5346 34 1 5.9453 -0.3012 -2.4789 35 1 2.9435 -1.0687 1.0479 36 1 2.7089 1.0117 2.2163 37 1 0.9972 0.6093 2.4929 38 1 6.7024 -1.7759 3.3484 39 1 0.2637 -0.6049 4.3677 40 1 1.3405 -1.8955 5.1266 41 1 3.0533 -0.1199 5.7167 42 1 1.9770 1.1711 4.9579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 24.546024 kcal Electronic energy + Delta-G solvation = -18213.923813 eV Core-core repulsion = 15615.600045 eV Total energy + Delta-G solvation = -2598.323768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.18835 -37.11170 -35.47513 -32.05338 -30.88254 -28.86183 -27.51414 -25.77204 -24.80736 -23.68437 -21.54886 -21.00581 -19.76750 -18.84400 -16.27082 -15.64149 -15.49166 -14.93235 -14.84763 -14.60445 -14.13704 -13.63872 -13.16130 -12.87594 -12.69363 -12.34266 -12.16437 -12.09199 -11.91278 -11.61322 -11.55522 -11.38461 -11.06020 -10.88863 -10.58873 -10.53355 -10.35971 -10.17929 -9.97229 -9.38126 -8.98935 -8.57089 -8.35092 -8.24916 -7.46696 -6.07393 -4.07489 3.28149 3.38134 3.44236 4.06192 4.44171 4.75858 5.11563 5.13988 5.20598 5.23511 5.32741 5.41625 5.46624 5.60892 5.65476 5.76831 5.80732 5.88318 5.95701 5.97253 6.05537 6.06658 6.13868 6.25107 6.26909 6.37087 6.46959 6.52456 6.56333 6.58400 6.72750 6.81967 7.11163 7.14213 7.16471 7.21400 7.80596 7.99790 8.36961 8.61366 9.01229 9.56527 11.03939 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.008207 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.030743 B = 3410.726091 C = 4368.957943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.080 3.920 3 H 0.028 0.972 4 C -0.112 4.112 5 C 0.048 3.952 6 N -0.544 5.544 7 C 0.022 3.978 8 C 0.023 3.977 9 N -0.668 5.668 10 C 0.098 3.902 11 C 0.009 3.991 12 C -0.473 4.473 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.898 5.898 16 Si 0.871 3.129 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.175 4.175 21 C -0.208 4.208 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.087 0.913 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.358 0.642 36 H 0.016 0.984 37 H 0.047 0.953 38 H 0.262 0.738 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 5.607 -10.052 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 H 0.046 0.954 4 C -0.150 4.150 5 C -0.080 4.080 6 N -0.268 5.268 7 C -0.127 4.127 8 C -0.125 4.125 9 N -0.304 5.304 10 C -0.031 4.031 11 C 0.008 3.992 12 C -0.510 4.510 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.535 5.535 16 Si 0.699 3.301 17 H -0.207 1.207 18 H -0.225 1.225 19 H -0.180 1.180 20 C -0.212 4.212 21 C -0.246 4.246 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.181 0.819 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.967 4.814 -9.970 12.577 hybrid contribution 1.538 2.461 0.296 2.917 sum -4.429 7.275 -9.674 12.889 Atomic orbital electron populations 1.21758 0.95245 1.02090 1.00235 1.21489 0.95512 0.95318 0.90815 0.95430 1.21712 0.94022 1.02432 0.96807 1.22285 0.96467 0.97141 0.92110 1.61967 1.10694 1.51389 1.02725 1.22431 1.01236 0.95311 0.93697 1.22395 0.87136 1.00166 1.02794 1.60418 1.33346 1.35170 1.01416 1.21577 0.97424 0.92800 0.91315 1.19397 0.96887 0.97063 0.85859 1.20276 0.87689 0.95226 1.47853 0.90127 1.24976 0.96305 0.96742 0.94702 1.69912 0.99592 1.34907 1.49122 0.86991 0.77642 0.86670 0.78811 1.20704 1.22461 1.18008 1.22789 0.93221 0.98780 1.06458 1.22974 1.03342 0.95401 1.02855 0.93603 0.91977 0.93081 0.90120 0.92021 0.95411 0.89461 0.96097 0.91781 0.91161 0.90649 0.91695 0.95968 0.81863 0.96599 0.93459 0.92795 0.91182 0.89870 0.89821 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.37 37.16 0.35 -1.57 16 2 C 0.08 1.28 2.64 -67.71 -0.18 1.10 16 3 H 0.03 0.45 7.92 -51.93 -0.41 0.04 16 4 C -0.11 -1.63 4.85 -26.73 -0.13 -1.76 16 5 C 0.05 0.75 4.69 -3.82 -0.02 0.73 16 6 N -0.54 -7.78 5.02 -251.26 -1.26 -9.04 16 7 C 0.02 0.25 9.33 60.07 0.56 0.81 16 8 C 0.02 0.31 9.57 60.07 0.57 0.89 16 9 N -0.67 -13.20 6.06 -106.73 -0.65 -13.85 16 10 C 0.10 2.05 5.42 -3.82 -0.02 2.03 16 11 C 0.01 0.21 1.19 -155.66 -0.19 0.03 16 12 C -0.47 -12.79 8.07 -34.44 -0.28 -13.07 16 13 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.51 13.96 55.43 0.77 -25.73 16 16 Si 0.87 21.41 25.17 -169.99 -4.28 17.13 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.00 5.26 56.52 0.30 -5.70 16 20 C -0.18 -3.67 9.88 -26.73 -0.26 -3.93 16 21 C -0.21 -4.50 7.32 -26.73 -0.20 -4.69 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.74 7.15 -51.93 -0.37 0.37 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 0.79 6.34 -51.92 -0.33 0.46 16 27 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.09 1.59 6.56 -51.93 -0.34 1.25 16 29 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.36 7.79 5.62 -39.29 -0.22 7.57 16 36 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 37 H 0.05 0.91 6.88 -51.93 -0.36 0.56 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 40 H 0.08 1.76 8.14 -51.92 -0.42 1.34 16 41 H 0.08 1.89 7.09 -51.93 -0.37 1.53 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -28.34 322.01 -8.25 -36.58 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.80 Total: 7.53 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 0.12 Total: -17.48 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -1.13 Total: -48.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.28 Total: 17.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.34 -8.25 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.129 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds