Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47022 * 239.99976 * 2 1 3 5 5 C 1.52999 * 109.47102 * 174.06559 * 4 2 1 6 6 N 1.46903 * 109.46944 * 185.01647 * 5 4 2 7 7 C 1.46904 * 111.00191 * 66.04697 * 6 5 4 8 8 C 1.46905 * 110.99682 * 190.00007 * 6 5 4 9 9 N 1.46901 * 109.46888 * 120.00278 * 2 1 3 10 10 C 1.46899 * 110.99826 * 278.72425 * 9 2 1 11 11 C 1.52999 * 109.46939 * 174.64841 * 10 9 2 12 12 C 1.50704 * 115.55073 * 39.53851 * 11 10 9 13 13 H 1.07992 * 120.00405 * 265.20567 * 12 11 10 14 14 C 1.37880 * 119.99536 * 85.20280 * 12 11 10 15 15 N 1.31510 * 119.99858 * 184.70580 * 14 12 11 16 16 Si 1.86804 * 120.00015 * 4.70831 * 14 12 11 17 17 H 1.48502 * 109.47180 * 94.49076 * 16 14 12 18 18 H 1.48503 * 109.46564 * 214.48806 * 16 14 12 19 19 H 1.48503 * 109.47241 * 334.48531 * 16 14 12 20 20 C 1.52999 * 117.49838 * 253.83404 * 11 10 9 21 21 C 1.53000 * 60.00021 * 252.50861 * 20 11 10 22 22 H 1.09001 * 109.47001 * 59.99931 * 1 2 3 23 23 H 1.08996 * 109.47530 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47247 * 300.00306 * 1 2 3 25 25 H 1.09004 * 109.47429 * 294.07084 * 4 2 1 26 26 H 1.09007 * 109.46928 * 54.06827 * 4 2 1 27 27 H 1.08997 * 109.47179 * 305.01406 * 5 4 2 28 28 H 1.09000 * 109.46999 * 65.01834 * 5 4 2 29 29 H 1.08999 * 109.46792 * 60.00244 * 7 6 5 30 30 H 1.09003 * 109.46699 * 179.97438 * 7 6 5 31 31 H 1.08992 * 109.46715 * 300.00020 * 7 6 5 32 32 H 1.08993 * 109.47011 * 60.00383 * 8 6 5 33 33 H 1.09003 * 109.46658 * 180.02562 * 8 6 5 34 34 H 1.08995 * 109.47267 * 299.99490 * 8 6 5 35 35 H 1.00900 * 110.99962 * 154.77377 * 9 2 1 36 36 H 1.08994 * 109.47437 * 294.64857 * 10 9 2 37 37 H 1.08998 * 109.46711 * 54.65439 * 10 9 2 38 38 H 0.96999 * 119.99940 * 180.02562 * 15 14 12 39 39 H 1.09003 * 117.50323 * 0.02562 * 20 11 10 40 40 H 1.09010 * 117.49706 * 145.02205 * 20 11 10 41 41 H 1.09000 * 117.50206 * 252.50850 * 21 20 11 42 42 H 1.09005 * 117.51509 * 107.47896 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5627 -0.5934 -1.3261 6 7 4.0405 -1.1809 -2.5849 7 6 3.5661 -0.4075 -3.7403 8 6 5.5053 -1.2920 -2.5913 9 7 2.0196 -0.6926 1.1994 10 6 1.9989 0.1985 2.3671 11 6 2.3869 -0.5916 3.6185 12 6 3.4937 -1.5978 3.4348 13 1 3.2557 -2.6306 3.2274 14 6 4.8102 -1.1997 3.5314 15 7 5.7762 -2.0559 3.2801 16 14 5.2217 0.5560 4.0193 17 1 5.4531 0.6212 5.4847 18 1 6.4476 0.9938 3.3046 19 1 4.0916 1.4484 3.6562 20 6 1.2730 -0.9390 4.6082 21 6 2.3061 0.1319 4.9642 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.7659 -1.7750 -1.1978 26 1 1.5924 -0.2723 -2.1361 27 1 3.8412 0.4597 -1.2878 28 1 4.0143 -1.1195 -0.4851 29 1 3.9360 0.6153 -3.6694 30 1 3.9346 -0.8640 -4.6590 31 1 2.4762 -0.4000 -3.7496 32 1 5.8250 -1.9275 -1.7655 33 1 5.8323 -1.7295 -3.5346 34 1 5.9453 -0.3012 -2.4789 35 1 2.9435 -1.0687 1.0479 36 1 2.7089 1.0117 2.2163 37 1 0.9972 0.6093 2.4929 38 1 6.7024 -1.7759 3.3484 39 1 0.2637 -0.6049 4.3677 40 1 1.3405 -1.8955 5.1266 41 1 3.0533 -0.1199 5.7167 42 1 1.9770 1.1711 4.9579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = 5.019330 kcal Electronic energy + Delta-G solvation = -18214.770554 eV Core-core repulsion = 15615.600045 eV Total energy + Delta-G solvation = -2599.170509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.56228 -38.60136 -36.84841 -34.19091 -32.29150 -30.05514 -28.50636 -27.76554 -26.26927 -25.03299 -23.25769 -22.16749 -21.11254 -20.68109 -18.20267 -16.98175 -16.92149 -16.59880 -16.05010 -15.88615 -15.59005 -15.27069 -14.74917 -14.54197 -14.11821 -13.75811 -13.62807 -13.26970 -13.14338 -13.05594 -12.73091 -12.70343 -12.59555 -12.54443 -12.10738 -11.95867 -11.88735 -11.70537 -11.46320 -11.22144 -10.95328 -10.52770 -10.19007 -9.35359 -9.01275 -8.24090 -6.27074 1.31732 1.36100 1.47936 2.37654 2.96717 3.07723 3.19243 3.59229 3.92885 4.06663 4.11433 4.23666 4.33285 4.40056 4.43315 4.49146 4.54550 4.58976 4.63070 4.71568 4.74386 4.79790 4.88874 4.90190 4.95768 4.99216 5.02095 5.07564 5.13406 5.18481 5.32442 5.38597 5.51451 5.52924 5.78732 6.00503 6.11494 6.36950 6.54654 6.70090 6.83944 7.39382 8.90997 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.008207 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.030743 B = 3410.726091 C = 4368.957943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.077 3.923 3 H 0.030 0.970 4 C -0.100 4.100 5 C 0.054 3.946 6 N -0.558 5.558 7 C 0.021 3.979 8 C 0.024 3.976 9 N -0.681 5.681 10 C 0.107 3.893 11 C -0.020 4.020 12 C -0.463 4.463 13 H 0.032 0.968 14 C 0.024 3.976 15 N -0.945 5.945 16 Si 0.927 3.073 17 H -0.278 1.278 18 H -0.303 1.303 19 H -0.232 1.232 20 C -0.162 4.162 21 C -0.200 4.200 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.023 0.977 35 H 0.341 0.659 36 H 0.007 0.993 37 H 0.071 0.929 38 H 0.262 0.738 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 7.941 -10.974 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 H 0.048 0.952 4 C -0.138 4.138 5 C -0.074 4.074 6 N -0.282 5.282 7 C -0.126 4.126 8 C -0.125 4.125 9 N -0.314 5.314 10 C -0.023 4.023 11 C -0.021 4.021 12 C -0.501 4.501 13 H 0.050 0.950 14 C -0.173 4.173 15 N -0.585 5.585 16 Si 0.753 3.247 17 H -0.204 1.204 18 H -0.230 1.230 19 H -0.155 1.155 20 C -0.199 4.199 21 C -0.238 4.238 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.162 0.838 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.866 7.160 -10.894 15.226 hybrid contribution 2.084 1.618 0.539 2.693 sum -5.782 8.778 -10.355 14.755 Atomic orbital electron populations 1.21717 0.93299 1.02090 1.01601 1.21643 0.96886 0.95061 0.89703 0.95178 1.21622 0.93218 1.01623 0.97355 1.22127 0.97082 0.96414 0.91804 1.61975 1.11097 1.52137 1.02973 1.22514 1.01849 0.95279 0.92986 1.22396 0.86956 0.99980 1.03120 1.60460 1.32248 1.35849 1.02883 1.21477 0.98266 0.92119 0.90430 1.19412 0.97074 0.97738 0.87885 1.20304 0.89221 0.94122 1.46464 0.94959 1.25676 0.96150 1.00556 0.94952 1.70054 0.99958 1.37154 1.51373 0.86075 0.77814 0.82460 0.78312 1.20387 1.23017 1.15459 1.22827 0.94197 0.98357 1.04486 1.22999 1.03072 0.97022 1.00712 0.90744 0.92646 0.93210 0.91546 0.89247 0.95542 0.93228 0.95695 0.90097 0.90196 0.92892 0.89395 0.95808 0.83788 0.97514 0.91101 0.92932 0.88120 0.90966 0.91193 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.37 71.98 0.67 -2.60 16 2 C 0.08 2.35 2.64 44.91 0.12 2.46 16 3 H 0.03 0.92 7.92 -2.39 -0.02 0.90 16 4 C -0.10 -2.81 4.85 30.59 0.15 -2.66 16 5 C 0.05 1.69 4.69 86.30 0.40 2.10 16 6 N -0.56 -15.57 5.02 -948.84 -4.76 -20.33 16 7 C 0.02 0.44 9.33 127.69 1.19 1.64 16 8 C 0.02 0.63 9.57 127.69 1.22 1.85 16 9 N -0.68 -26.67 6.06 -491.58 -2.98 -29.65 16 10 C 0.11 4.26 5.42 86.30 0.47 4.72 16 11 C -0.02 -0.91 1.19 -52.93 -0.06 -0.97 16 12 C -0.46 -25.82 8.07 25.60 0.21 -25.61 16 13 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 14 C 0.02 1.36 5.47 84.66 0.46 1.82 16 15 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 16 Si 0.93 44.32 25.17 68.60 1.73 46.05 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 19 H -0.23 -10.09 5.26 99.48 0.52 -9.56 16 20 C -0.16 -6.42 9.88 30.59 0.30 -6.12 16 21 C -0.20 -8.14 7.32 30.59 0.22 -7.92 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.27 7.15 -2.39 -0.02 1.26 16 25 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.09 2.01 6.34 -2.38 -0.02 2.00 16 27 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.05 1.92 6.56 -2.39 -0.02 1.90 16 29 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 31 H 0.08 1.49 6.37 -2.39 -0.02 1.48 16 32 H 0.05 1.61 8.12 -2.39 -0.02 1.60 16 33 H 0.09 1.89 8.12 -2.39 -0.02 1.88 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.34 15.38 5.62 -89.69 -0.50 14.87 16 36 H 0.01 0.28 6.69 -2.39 -0.02 0.27 16 37 H 0.07 2.49 6.88 -2.39 -0.02 2.47 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.10 3.40 8.08 -2.39 -0.02 3.38 16 40 H 0.07 3.00 8.14 -2.38 -0.02 2.99 16 41 H 0.07 3.04 7.09 -2.39 -0.02 3.02 16 42 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -62.82 322.01 -0.08 -62.90 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.27 Total: 30.31 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 5.36 Total: -31.29 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -7.44 Total: -107.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.73 Total: 46.05 kcal Total: -62.82 -0.08 -62.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.918 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds