Wall clock time and date at job start Mon Mar 30 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46735 * 2 1 4 4 C 1.50703 * 109.47104 * 239.99909 * 2 1 3 5 5 H 1.07994 * 119.99802 * 335.07397 * 4 2 1 6 6 C 1.37874 * 119.99908 * 155.07362 * 4 2 1 7 7 N 1.31516 * 119.99859 * 184.99459 * 6 4 2 8 8 Si 1.86799 * 120.00087 * 4.99680 * 6 4 2 9 9 H 1.48494 * 109.47566 * 84.78513 * 8 6 4 10 10 H 1.48505 * 109.46841 * 204.78721 * 8 6 4 11 11 H 1.48503 * 109.47215 * 324.78210 * 8 6 4 12 12 N 1.46903 * 109.47451 * 119.99535 * 2 1 3 13 13 C 1.46900 * 110.99834 * 58.95367 * 12 2 1 14 14 C 1.46905 * 110.99883 * 295.00365 * 12 2 1 15 15 H 1.08998 * 109.47240 * 59.99904 * 14 12 2 16 16 C 1.52992 * 109.47000 * 299.99597 * 14 12 2 17 17 C 1.53000 * 109.47193 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47496 * 59.99785 * 17 16 14 19 19 C 1.53000 * 109.46959 * 300.00476 * 18 17 16 20 20 C 1.52998 * 109.46622 * 179.97438 * 14 12 2 21 21 H 1.08997 * 109.47543 * 299.99669 * 20 14 12 22 22 C 1.52996 * 109.47247 * 60.00017 * 20 14 12 23 23 N 1.46906 * 109.47045 * 184.99924 * 22 20 14 24 24 H 1.09002 * 109.47102 * 175.06273 * 1 2 3 25 25 H 1.09005 * 109.46733 * 295.05709 * 1 2 3 26 26 H 1.08996 * 109.47521 * 55.05866 * 1 2 3 27 27 H 0.97000 * 120.00083 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47423 * 296.04829 * 13 12 2 29 29 H 1.08999 * 109.46909 * 56.04813 * 13 12 2 30 30 H 1.08997 * 109.47535 * 176.04469 * 13 12 2 31 31 H 1.09008 * 109.47357 * 300.00230 * 16 14 12 32 32 H 1.09006 * 109.47503 * 60.00158 * 16 14 12 33 33 H 1.09005 * 109.47382 * 180.02562 * 17 16 14 34 34 H 1.09008 * 109.46433 * 299.99583 * 17 16 14 35 35 H 1.08998 * 109.46911 * 59.99884 * 18 17 16 36 36 H 1.08994 * 109.47282 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47279 * 299.99742 * 19 18 17 38 38 H 1.08997 * 109.47293 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.47010 * 304.99519 * 22 20 14 40 40 H 1.08996 * 109.47573 * 64.99902 * 22 20 14 41 41 H 1.00896 * 110.99876 * 180.02562 * 23 22 20 42 42 H 1.00902 * 110.99773 * 303.94857 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4127 -1.4477 -1.7191 6 6 3.2830 -0.4191 -1.7324 7 7 3.6826 -0.9653 -2.8600 8 14 4.4100 0.7513 -0.8107 9 1 5.1547 0.0024 0.2331 10 1 5.3720 1.3639 -1.7617 11 1 3.5991 1.8182 -0.1708 12 7 2.0198 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 1 0.5633 0.1178 2.4785 16 6 2.2599 1.4413 2.3771 17 6 1.8740 2.2032 3.6465 18 6 2.4005 1.4530 4.8716 19 6 1.7893 0.0510 4.9126 20 6 2.1744 -0.7111 3.6434 21 1 1.7387 -1.7098 3.6725 22 6 3.6980 -0.8217 3.5589 23 7 4.1917 -1.6442 4.6715 24 1 -0.3633 -1.0239 -0.0884 25 1 -0.3633 0.4353 0.9310 26 1 -0.3634 0.5885 -0.8424 27 1 4.5623 -0.7601 -3.2134 28 1 0.4421 -2.0730 1.3349 29 1 1.8168 -2.5949 0.3320 30 1 1.9618 -2.5868 2.1060 31 1 3.3455 1.3628 2.3167 32 1 1.8851 1.9757 1.5041 33 1 2.3091 3.2022 3.6172 34 1 0.7885 2.2817 3.7073 35 1 3.4860 1.3745 4.8108 36 1 2.1252 1.9956 5.7759 37 1 0.7039 0.1294 4.9734 38 1 2.1647 -0.4837 5.7851 39 1 3.9767 -1.2855 2.6127 40 1 4.1385 0.1734 3.6194 41 1 5.1963 -1.7321 4.6381 42 1 3.8911 -1.2699 5.5590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:40 Heat of formation + Delta-G solvation = -7.488862 kcal Electronic energy + Delta-G solvation = -19341.581089 eV Core-core repulsion = 16741.868184 eV Total energy + Delta-G solvation = -2599.712905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65691 -36.25961 -33.80744 -32.38549 -30.42406 -30.00149 -28.35498 -25.46819 -25.14056 -23.77555 -21.96243 -21.30603 -19.05683 -17.92616 -16.93393 -15.87472 -15.77468 -14.96176 -14.48238 -14.13518 -13.64331 -13.44967 -13.30819 -13.02447 -12.79840 -12.57631 -12.37460 -11.98190 -11.61263 -11.36639 -11.25807 -10.98782 -10.87882 -10.74861 -10.65700 -10.41689 -10.15131 -9.99062 -9.75646 -9.58481 -9.38848 -8.87050 -8.51022 -8.38150 -7.10022 -6.01815 -4.04641 3.43028 3.48071 3.54213 4.54680 4.68904 4.79650 4.92987 5.02654 5.16341 5.40473 5.47120 5.57064 5.66747 5.71972 5.77379 5.83441 5.83960 6.07886 6.15532 6.17919 6.22132 6.25794 6.31433 6.36187 6.40190 6.46046 6.52598 6.59391 6.67477 6.74268 6.80568 6.96373 7.08585 7.25763 7.36966 7.62883 7.73247 8.16541 8.37886 8.65790 9.01728 9.63490 11.09751 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.009456 C = 0.009110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.374949 B = 2960.419456 C = 3072.876996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 H 0.054 0.946 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.081 3.919 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.304 1.304 11 H -0.266 1.266 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.083 3.917 15 H 0.034 0.966 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.078 4.078 21 H 0.077 0.923 22 C 0.067 3.933 23 N -0.853 5.853 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.008 0.992 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.026 0.974 41 H 0.335 0.665 42 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 4.057 15.366 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.072 0.928 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.123 4.123 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.232 1.232 11 H -0.191 1.191 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.026 4.026 15 H 0.052 0.948 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.097 4.097 21 H 0.095 0.905 22 C -0.063 4.063 23 N -0.382 5.382 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.147 0.853 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.719 3.443 14.864 15.354 hybrid contribution 0.286 1.434 0.708 1.625 sum -1.433 4.878 15.572 16.381 Atomic orbital electron populations 1.22309 1.00545 1.00629 0.98943 1.20000 0.89674 0.95938 0.88598 0.92805 1.20858 1.01686 1.23942 1.07325 0.91259 1.25025 0.97673 0.95598 0.93960 1.69940 1.19875 1.44546 1.19505 0.86588 0.80181 0.81400 0.79239 1.19795 1.23201 1.19093 1.62896 1.59437 1.01903 1.01076 1.22171 0.95851 0.91170 1.02090 1.21602 0.96506 0.93309 0.91210 0.94799 1.21715 1.01468 0.95443 0.96900 1.21522 1.00611 0.98342 0.94966 1.21579 1.00444 0.96067 0.97668 1.21569 1.00391 0.95463 0.97867 1.21186 0.95710 0.99168 0.93674 0.90476 1.21913 0.94577 0.94796 0.95007 1.58837 1.16499 1.56955 1.05912 0.93518 0.95331 0.93286 0.92796 0.97390 0.90336 0.93232 0.91607 0.91578 0.92472 0.92343 0.92189 0.92705 0.92277 0.92242 0.89127 0.95624 0.85309 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 8.43 37.16 0.31 -3.07 16 2 C 0.16 3.74 1.46 -68.86 -0.10 3.64 16 3 H 0.05 1.28 3.64 -51.93 -0.19 1.10 16 4 C -0.50 -13.75 7.65 -34.44 -0.26 -14.01 16 5 H 0.07 2.08 8.05 -52.49 -0.42 1.66 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 8 Si 0.90 22.39 27.27 -169.99 -4.64 17.76 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 11 H -0.27 -6.26 6.14 56.52 0.35 -5.91 16 12 N -0.53 -10.94 3.30 -228.29 -0.75 -11.69 16 13 C 0.04 0.70 8.36 60.06 0.50 1.21 16 14 C 0.08 1.44 1.36 -67.71 -0.09 1.35 16 15 H 0.03 0.60 6.34 -51.93 -0.33 0.27 16 16 C -0.12 -1.98 4.71 -26.74 -0.13 -2.11 16 17 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 18 C -0.12 -1.43 5.65 -26.73 -0.15 -1.58 16 19 C -0.11 -1.42 5.22 -26.75 -0.14 -1.56 16 20 C -0.08 -1.18 1.90 -90.64 -0.17 -1.36 16 21 H 0.08 1.24 6.35 -51.93 -0.33 0.91 16 22 C 0.07 1.05 5.44 -3.82 -0.02 1.03 16 23 N -0.85 -11.20 9.62 -10.37 -0.10 -11.30 16 24 H 0.05 0.96 6.76 -51.93 -0.35 0.61 16 25 H 0.03 0.52 6.30 -51.93 -0.33 0.19 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.01 0.15 6.62 -51.93 -0.34 -0.20 16 29 H 0.08 1.77 6.99 -51.93 -0.36 1.41 16 30 H 0.05 0.91 6.23 -51.93 -0.32 0.59 16 31 H 0.07 1.20 6.55 -51.92 -0.34 0.86 16 32 H 0.07 1.21 6.30 -51.93 -0.33 0.89 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.73 6.32 -51.93 -0.33 0.41 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 39 H 0.09 1.74 7.45 -51.93 -0.39 1.35 16 40 H 0.03 0.40 4.83 -51.93 -0.25 0.15 16 41 H 0.34 3.96 9.08 -39.29 -0.36 3.61 16 42 H 0.33 3.72 7.24 -39.29 -0.28 3.43 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -29.01 296.79 -7.65 -36.66 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.90 Total: 6.79 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.51 Total: -15.95 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.08 Total: -49.73 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.64 Total: 17.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.01 -7.65 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.174 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds