Wall clock time and date at job start Mon Mar 30 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46735 * 2 1 4 4 C 1.50703 * 109.47104 * 239.99909 * 2 1 3 5 5 H 1.07994 * 119.99802 * 335.07397 * 4 2 1 6 6 C 1.37874 * 119.99908 * 155.07362 * 4 2 1 7 7 N 1.31516 * 119.99859 * 184.99459 * 6 4 2 8 8 Si 1.86799 * 120.00087 * 4.99680 * 6 4 2 9 9 H 1.48494 * 109.47566 * 84.78513 * 8 6 4 10 10 H 1.48505 * 109.46841 * 204.78721 * 8 6 4 11 11 H 1.48503 * 109.47215 * 324.78210 * 8 6 4 12 12 N 1.46903 * 109.47451 * 119.99535 * 2 1 3 13 13 C 1.46900 * 110.99834 * 58.95367 * 12 2 1 14 14 C 1.46905 * 110.99883 * 295.00365 * 12 2 1 15 15 H 1.08998 * 109.47240 * 59.99904 * 14 12 2 16 16 C 1.52992 * 109.47000 * 299.99597 * 14 12 2 17 17 C 1.53000 * 109.47193 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47496 * 59.99785 * 17 16 14 19 19 C 1.53000 * 109.46959 * 300.00476 * 18 17 16 20 20 C 1.52998 * 109.46622 * 179.97438 * 14 12 2 21 21 H 1.08997 * 109.47543 * 299.99669 * 20 14 12 22 22 C 1.52996 * 109.47247 * 60.00017 * 20 14 12 23 23 N 1.46906 * 109.47045 * 184.99924 * 22 20 14 24 24 H 1.09002 * 109.47102 * 175.06273 * 1 2 3 25 25 H 1.09005 * 109.46733 * 295.05709 * 1 2 3 26 26 H 1.08996 * 109.47521 * 55.05866 * 1 2 3 27 27 H 0.97000 * 120.00083 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47423 * 296.04829 * 13 12 2 29 29 H 1.08999 * 109.46909 * 56.04813 * 13 12 2 30 30 H 1.08997 * 109.47535 * 176.04469 * 13 12 2 31 31 H 1.09008 * 109.47357 * 300.00230 * 16 14 12 32 32 H 1.09006 * 109.47503 * 60.00158 * 16 14 12 33 33 H 1.09005 * 109.47382 * 180.02562 * 17 16 14 34 34 H 1.09008 * 109.46433 * 299.99583 * 17 16 14 35 35 H 1.08998 * 109.46911 * 59.99884 * 18 17 16 36 36 H 1.08994 * 109.47282 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47279 * 299.99742 * 19 18 17 38 38 H 1.08997 * 109.47293 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.47010 * 304.99519 * 22 20 14 40 40 H 1.08996 * 109.47573 * 64.99902 * 22 20 14 41 41 H 1.00896 * 110.99876 * 180.02562 * 23 22 20 42 42 H 1.00902 * 110.99773 * 303.94857 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4127 -1.4477 -1.7191 6 6 3.2830 -0.4191 -1.7324 7 7 3.6826 -0.9653 -2.8600 8 14 4.4100 0.7513 -0.8107 9 1 5.1547 0.0024 0.2331 10 1 5.3720 1.3639 -1.7617 11 1 3.5991 1.8182 -0.1708 12 7 2.0198 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 1 0.5633 0.1178 2.4785 16 6 2.2599 1.4413 2.3771 17 6 1.8740 2.2032 3.6465 18 6 2.4005 1.4530 4.8716 19 6 1.7893 0.0510 4.9126 20 6 2.1744 -0.7111 3.6434 21 1 1.7387 -1.7098 3.6725 22 6 3.6980 -0.8217 3.5589 23 7 4.1917 -1.6442 4.6715 24 1 -0.3633 -1.0239 -0.0884 25 1 -0.3633 0.4353 0.9310 26 1 -0.3634 0.5885 -0.8424 27 1 4.5623 -0.7601 -3.2134 28 1 0.4421 -2.0730 1.3349 29 1 1.8168 -2.5949 0.3320 30 1 1.9618 -2.5868 2.1060 31 1 3.3455 1.3628 2.3167 32 1 1.8851 1.9757 1.5041 33 1 2.3091 3.2022 3.6172 34 1 0.7885 2.2817 3.7073 35 1 3.4860 1.3745 4.8108 36 1 2.1252 1.9956 5.7759 37 1 0.7039 0.1294 4.9734 38 1 2.1647 -0.4837 5.7851 39 1 3.9767 -1.2855 2.6127 40 1 4.1385 0.1734 3.6194 41 1 5.1963 -1.7321 4.6381 42 1 3.8911 -1.2699 5.5590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:40 Heat of formation + Delta-G solvation = -27.904941 kcal Electronic energy + Delta-G solvation = -19342.466396 eV Core-core repulsion = 16741.868184 eV Total energy + Delta-G solvation = -2600.598213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97510 -37.80091 -34.92596 -34.46572 -31.99555 -31.19423 -29.79539 -27.46527 -26.58170 -25.09098 -23.36319 -22.51547 -20.70414 -19.19308 -18.95810 -17.27525 -17.03706 -16.40867 -16.03769 -15.62642 -15.08879 -14.94910 -14.65452 -14.53623 -14.29992 -14.13819 -13.80475 -13.29188 -13.16286 -12.80481 -12.74455 -12.71873 -12.45477 -12.14512 -12.05671 -11.81952 -11.72949 -11.57560 -11.32053 -11.04089 -10.92633 -10.72699 -10.57907 -9.46644 -8.73957 -8.24918 -6.30460 1.38307 1.45470 1.52163 2.43160 2.98165 3.52520 3.69024 3.83391 3.96785 4.10836 4.26151 4.35880 4.47787 4.48962 4.54168 4.57011 4.65319 4.69121 4.70095 4.72597 4.81226 4.91378 4.99176 5.03187 5.12705 5.19091 5.21660 5.31321 5.37126 5.38123 5.42942 5.48035 5.49018 5.62817 5.72094 6.18528 6.30554 6.59360 6.70039 6.70834 6.90333 7.40489 8.90411 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.009456 C = 0.009110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.374949 B = 2960.419456 C = 3072.876996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.051 0.949 4 C -0.496 4.496 5 H 0.028 0.972 6 C 0.025 3.975 7 N -0.951 5.951 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.307 1.307 11 H -0.243 1.243 12 N -0.541 5.541 13 C 0.046 3.954 14 C 0.084 3.916 15 H 0.038 0.962 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.073 4.073 21 H 0.068 0.932 22 C 0.075 3.925 23 N -0.853 5.853 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.344 0.656 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 5.615 18.893 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.069 0.931 4 C -0.535 4.535 5 H 0.046 0.954 6 C -0.173 4.173 7 N -0.591 5.591 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.235 1.235 11 H -0.167 1.167 12 N -0.266 5.266 13 C -0.102 4.102 14 C -0.024 4.024 15 H 0.056 0.944 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.093 4.093 21 H 0.086 0.914 22 C -0.056 4.056 23 N -0.384 5.384 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.156 0.844 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.160 5.005 18.424 19.214 hybrid contribution 0.355 0.869 -0.386 1.015 sum -1.805 5.874 18.038 19.056 Atomic orbital electron populations 1.22193 0.98656 1.00512 1.00336 1.19785 0.91143 0.95045 0.87790 0.93095 1.21102 1.00944 1.22613 1.08814 0.95363 1.25806 0.99323 0.97543 0.94657 1.70078 1.20502 1.46996 1.21558 0.85639 0.78311 0.79966 0.77802 1.19835 1.23494 1.16655 1.62595 1.59932 1.02215 1.01819 1.22031 0.96518 0.90778 1.00886 1.21694 0.96864 0.93631 0.90254 0.94376 1.21713 1.00325 0.95205 0.98380 1.21501 1.01365 0.98530 0.93550 1.21569 1.00141 0.95697 0.97968 1.21541 1.01053 0.95533 0.96521 1.21126 0.95108 0.98883 0.94139 0.91374 1.21679 0.95076 0.94666 0.94135 1.58742 1.17277 1.56442 1.05933 0.94133 0.92576 0.93471 0.92876 0.96299 0.93971 0.91582 0.93130 0.93390 0.91293 0.91396 0.92501 0.90098 0.91448 0.90420 0.93121 0.95464 0.84401 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.43 71.98 0.61 -5.72 16 2 C 0.17 7.72 1.46 44.17 0.06 7.78 16 3 H 0.05 2.38 3.64 -2.39 -0.01 2.37 16 4 C -0.50 -28.24 7.65 25.60 0.20 -28.04 16 5 H 0.03 1.79 8.05 -2.91 -0.02 1.77 16 6 C 0.02 1.46 5.47 84.65 0.46 1.92 16 7 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 8 Si 0.96 47.00 27.27 68.60 1.87 48.87 16 9 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 11 H -0.24 -10.89 6.14 99.48 0.61 -10.28 16 12 N -0.54 -22.08 3.30 -876.19 -2.89 -24.97 16 13 C 0.05 1.84 8.36 127.69 1.07 2.90 16 14 C 0.08 2.73 1.36 44.91 0.06 2.79 16 15 H 0.04 1.23 6.34 -2.39 -0.02 1.21 16 16 C -0.12 -3.69 4.71 30.59 0.14 -3.54 16 17 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 18 C -0.12 -2.22 5.65 30.59 0.17 -2.05 16 19 C -0.11 -2.20 5.22 30.58 0.16 -2.04 16 20 C -0.07 -2.02 1.90 -10.81 -0.02 -2.04 16 21 H 0.07 2.01 6.35 -2.39 -0.02 2.00 16 22 C 0.08 2.20 5.44 86.30 0.47 2.67 16 23 N -0.85 -20.15 9.62 -186.71 -1.80 -21.95 16 24 H 0.04 1.64 6.76 -2.39 -0.02 1.63 16 25 H 0.06 1.92 6.30 -2.38 -0.02 1.91 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 28 H 0.02 0.70 6.62 -2.39 -0.02 0.68 16 29 H 0.04 1.96 6.99 -2.39 -0.02 1.95 16 30 H 0.07 2.39 6.23 -2.39 -0.01 2.38 16 31 H 0.05 1.72 6.55 -2.38 -0.02 1.71 16 32 H 0.05 1.65 6.30 -2.38 -0.02 1.64 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 1.15 6.32 -2.39 -0.02 1.13 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.33 6.67 -2.39 -0.02 1.32 16 39 H 0.05 1.90 7.45 -2.39 -0.02 1.89 16 40 H 0.03 0.79 4.83 -2.39 -0.01 0.78 16 41 H 0.34 7.33 9.08 -89.70 -0.81 6.52 16 42 H 0.34 6.49 7.24 -89.69 -0.65 5.84 16 Total: -1.00 -64.90 296.79 0.51 -64.40 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.54 Total: 21.50 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.56 Total: -27.70 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.39 Total: -107.07 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.87 Total: 48.87 kcal Total: -64.90 0.51 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.491 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds