Wall clock time and date at job start Mon Mar 30 2020 03:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.46902 * 110.99859 * 199.72957 * 3 2 1 5 5 H 1.09001 * 109.47155 * 289.61719 * 4 3 2 6 6 C 1.53002 * 109.46871 * 169.61930 * 4 3 2 7 7 C 1.50697 * 109.47111 * 49.62397 * 4 3 2 8 8 H 1.08006 * 120.00009 * 359.97438 * 7 4 3 9 9 C 1.37881 * 119.99938 * 180.02562 * 7 4 3 10 10 N 1.31514 * 119.99813 * 359.97438 * 9 7 4 11 11 Si 1.86801 * 119.99912 * 179.97438 * 9 7 4 12 12 H 1.48500 * 109.47191 * 59.99442 * 11 9 7 13 13 H 1.48496 * 109.46763 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46904 * 299.99615 * 11 9 7 15 15 C 1.46895 * 111.00247 * 75.77047 * 3 2 1 16 16 C 1.52998 * 109.47352 * 207.82269 * 15 3 2 17 17 C 1.53002 * 109.47441 * 180.02562 * 16 15 3 18 18 C 1.53005 * 109.46997 * 59.99915 * 17 16 15 19 19 N 1.46903 * 109.46769 * 60.00068 * 18 17 16 20 20 C 1.52998 * 109.47094 * 300.00296 * 18 17 16 21 21 C 1.52996 * 109.47217 * 60.00155 * 20 18 17 22 22 H 1.09005 * 109.46929 * 64.68742 * 1 2 3 23 23 H 1.08995 * 109.47193 * 184.68981 * 1 2 3 24 24 H 1.09006 * 109.47227 * 304.68881 * 1 2 3 25 25 H 1.08995 * 109.47075 * 239.99500 * 2 1 3 26 26 H 1.09007 * 109.47126 * 119.99489 * 2 1 3 27 27 H 1.09003 * 109.47467 * 320.05830 * 6 4 3 28 28 H 1.09001 * 109.47076 * 80.05767 * 6 4 3 29 29 H 1.08997 * 109.47239 * 200.05620 * 6 4 3 30 30 H 0.97004 * 119.99671 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.47152 * 327.82764 * 15 3 2 32 32 H 1.09003 * 109.47066 * 60.00095 * 16 15 3 33 33 H 1.08996 * 109.47396 * 300.00345 * 16 15 3 34 34 H 1.09001 * 109.47428 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.46870 * 300.00376 * 17 16 15 36 36 H 1.08998 * 109.46755 * 180.02562 * 18 17 16 37 37 H 1.00898 * 110.99817 * 185.70717 * 19 18 17 38 38 H 1.00893 * 111.00350 * 309.66551 * 19 18 17 39 39 H 1.08996 * 109.47396 * 299.99922 * 20 18 17 40 40 H 1.09006 * 109.47043 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47204 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47774 * 59.99892 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4123 1.4510 -0.4630 5 1 4.0672 1.0159 0.2920 6 6 3.8033 2.9116 -0.6967 7 6 3.5503 0.6817 -1.7515 8 1 2.6896 0.1923 -2.1831 9 6 4.7755 0.6017 -2.3788 10 7 5.8236 1.1972 -1.8530 11 14 4.9466 -0.3524 -3.9756 12 1 4.0547 0.2402 -5.0044 13 1 6.3543 -0.2856 -4.4436 14 1 4.5668 -1.7699 -3.7483 15 6 1.8774 1.9937 1.3293 16 6 1.7157 3.5080 1.1822 17 6 1.5681 4.1421 2.5667 18 6 2.8148 3.8411 3.4011 19 7 3.9981 4.3971 2.7314 20 6 2.9765 2.3268 3.5482 21 6 3.1241 1.6927 2.1637 22 1 -0.3633 0.4394 -0.9290 23 1 -0.3633 -1.0242 0.0840 24 1 -0.3634 0.5849 0.8450 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.9694 3.4419 -1.1567 28 1 4.0495 3.3789 0.2568 29 1 4.6697 2.9546 -1.3568 30 1 6.6856 1.1406 -2.2942 31 1 0.9992 1.5810 1.8258 32 1 0.8277 3.7225 0.5874 33 1 2.5939 3.9207 0.6857 34 1 1.4524 5.2209 2.4619 35 1 0.6901 3.7295 3.0636 36 1 2.7094 4.2924 4.3876 37 1 4.8441 4.1324 3.2133 38 1 4.0308 4.1165 1.7628 39 1 2.0985 1.9141 4.0450 40 1 3.8649 2.1123 4.1422 41 1 3.2398 0.6139 2.2685 42 1 4.0022 2.1053 1.6667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085870702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:13 Heat of formation + Delta-G solvation = 3.897226 kcal Electronic energy + Delta-G solvation = -19242.300065 eV Core-core repulsion = 16643.080897 eV Total energy + Delta-G solvation = -2599.219167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62956 -36.37614 -33.09760 -31.69211 -30.51452 -30.37667 -28.01296 -26.87589 -24.90717 -22.56991 -21.95211 -20.92053 -19.30357 -18.40083 -16.40500 -16.06880 -15.27197 -14.77242 -14.47573 -14.11528 -13.97054 -13.44652 -13.07511 -12.73038 -12.36497 -12.30910 -11.95170 -11.69603 -11.52495 -11.34402 -11.13280 -10.92810 -10.82400 -10.80096 -10.42995 -10.25292 -10.07235 -9.93695 -9.80415 -9.69124 -9.33459 -8.77748 -8.38202 -8.32801 -7.07084 -6.02345 -4.07160 3.30411 3.35237 3.38034 4.39517 4.79164 4.89299 5.09474 5.22230 5.27627 5.34917 5.58590 5.61793 5.80617 5.83346 5.86610 5.92954 6.03496 6.05457 6.12357 6.20246 6.30393 6.36387 6.49533 6.57457 6.59039 6.71822 6.74697 6.84606 6.90055 6.95320 7.05299 7.22465 7.47624 7.51349 7.76100 7.81153 7.85426 8.25063 8.36954 8.65036 9.00354 9.57492 11.03316 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.008322 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.665195 B = 3363.769920 C = 3976.121183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.528 5.528 4 C 0.207 3.793 5 H 0.008 0.992 6 C -0.133 4.133 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.089 3.911 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.092 3.908 19 N -0.850 5.850 20 C -0.150 4.150 21 C -0.154 4.154 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.034 0.966 28 H 0.014 0.986 29 H 0.084 0.916 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.334 0.666 38 H 0.350 0.650 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 2.163 8.329 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.252 5.252 4 C 0.101 3.899 5 H 0.026 0.974 6 C -0.191 4.191 7 C -0.546 4.546 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.020 4.020 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.020 4.020 19 N -0.383 5.383 20 C -0.190 4.190 21 C -0.193 4.193 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.168 0.832 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.597 3.168 8.087 10.907 hybrid contribution 0.960 -2.090 -0.331 2.324 sum -5.637 1.078 7.756 9.649 Atomic orbital electron populations 1.21799 0.97044 0.99678 1.01486 1.22090 0.93723 0.90851 1.01329 1.62327 1.24864 1.16557 1.21443 1.19307 0.82182 0.93682 0.94709 0.97416 1.22088 1.01688 0.96832 0.98455 1.21241 0.94567 1.31457 1.07369 0.91841 1.24919 0.95894 0.95813 0.97579 1.69898 1.00055 1.43469 1.39552 0.86637 0.76956 0.80371 0.83905 1.20235 1.21373 1.20425 1.21592 0.95669 0.94983 0.89759 1.21984 1.03771 0.94996 0.95776 1.21590 0.96324 1.00655 0.96531 1.21391 0.91488 0.91753 0.97347 1.59184 1.04541 1.66419 1.08189 1.22324 1.01203 0.97567 0.97881 1.22291 1.01440 1.00295 0.95234 0.92540 0.93773 0.93819 0.88790 0.96730 0.94681 0.96774 0.89769 0.92962 0.92195 0.91915 0.89319 0.91692 0.92317 0.91097 0.85374 0.83156 0.92248 0.92763 0.92676 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.06 37.16 0.37 -1.94 16 2 C 0.05 0.95 5.37 -3.82 -0.02 0.93 16 3 N -0.53 -10.96 4.21 -220.10 -0.93 -11.89 16 4 C 0.21 4.97 1.56 -68.86 -0.11 4.87 16 5 H 0.01 0.22 5.85 -51.93 -0.30 -0.09 16 6 C -0.13 -3.09 7.29 37.16 0.27 -2.82 16 7 C -0.51 -13.49 7.69 -34.44 -0.26 -13.75 16 8 H 0.06 1.69 6.11 -52.48 -0.32 1.37 16 9 C 0.06 1.60 5.18 -17.82 -0.09 1.50 16 10 N -0.89 -24.74 11.39 55.43 0.63 -24.11 16 11 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.09 1.58 1.92 -67.71 -0.13 1.45 16 16 C -0.13 -2.12 4.67 -26.73 -0.12 -2.24 16 17 C -0.11 -1.58 5.64 -26.73 -0.15 -1.73 16 18 C 0.09 1.27 3.71 -67.71 -0.25 1.02 16 19 N -0.85 -12.65 9.10 -4.66 -0.04 -12.69 16 20 C -0.15 -2.13 5.55 -26.73 -0.15 -2.28 16 21 C -0.15 -2.69 3.64 -26.73 -0.10 -2.78 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.67 6.74 -51.93 -0.35 0.32 16 25 H 0.09 2.04 5.33 -51.93 -0.28 1.77 16 26 H 0.01 0.28 7.38 -51.93 -0.38 -0.10 16 27 H 0.03 0.80 7.51 -51.93 -0.39 0.41 16 28 H 0.01 0.29 3.14 -51.93 -0.16 0.13 16 29 H 0.08 2.20 5.82 -51.93 -0.30 1.90 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.02 6.44 -51.93 -0.33 0.69 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.61 3.05 -51.93 -0.16 1.45 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.33 4.57 8.97 -39.29 -0.35 4.22 16 38 H 0.35 5.84 3.73 -39.30 -0.15 5.69 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 42 H 0.08 1.58 3.97 -51.93 -0.21 1.37 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -26.64 292.78 -8.28 -34.92 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.59 Total: 11.13 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -0.74 Total: -17.77 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.34 Total: -48.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.64 -8.28 -34.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085870702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.815 kcal (2) G-P(sol) polarization free energy of solvation -26.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds