Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.46902 * 110.99859 * 199.72957 * 3 2 1 5 5 H 1.09001 * 109.47155 * 289.61719 * 4 3 2 6 6 C 1.53002 * 109.46871 * 169.61930 * 4 3 2 7 7 C 1.50697 * 109.47111 * 49.62397 * 4 3 2 8 8 H 1.08006 * 120.00009 * 359.97438 * 7 4 3 9 9 C 1.37881 * 119.99938 * 180.02562 * 7 4 3 10 10 N 1.31514 * 119.99813 * 359.97438 * 9 7 4 11 11 Si 1.86801 * 119.99912 * 179.97438 * 9 7 4 12 12 H 1.48500 * 109.47191 * 59.99442 * 11 9 7 13 13 H 1.48496 * 109.46763 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46904 * 299.99615 * 11 9 7 15 15 C 1.46895 * 111.00247 * 75.77047 * 3 2 1 16 16 C 1.52998 * 109.47352 * 207.82269 * 15 3 2 17 17 C 1.53002 * 109.47441 * 180.02562 * 16 15 3 18 18 C 1.53005 * 109.46997 * 59.99915 * 17 16 15 19 19 N 1.46903 * 109.46769 * 60.00068 * 18 17 16 20 20 C 1.52998 * 109.47094 * 300.00296 * 18 17 16 21 21 C 1.52996 * 109.47217 * 60.00155 * 20 18 17 22 22 H 1.09005 * 109.46929 * 64.68742 * 1 2 3 23 23 H 1.08995 * 109.47193 * 184.68981 * 1 2 3 24 24 H 1.09006 * 109.47227 * 304.68881 * 1 2 3 25 25 H 1.08995 * 109.47075 * 239.99500 * 2 1 3 26 26 H 1.09007 * 109.47126 * 119.99489 * 2 1 3 27 27 H 1.09003 * 109.47467 * 320.05830 * 6 4 3 28 28 H 1.09001 * 109.47076 * 80.05767 * 6 4 3 29 29 H 1.08997 * 109.47239 * 200.05620 * 6 4 3 30 30 H 0.97004 * 119.99671 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.47152 * 327.82764 * 15 3 2 32 32 H 1.09003 * 109.47066 * 60.00095 * 16 15 3 33 33 H 1.08996 * 109.47396 * 300.00345 * 16 15 3 34 34 H 1.09001 * 109.47428 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.46870 * 300.00376 * 17 16 15 36 36 H 1.08998 * 109.46755 * 180.02562 * 18 17 16 37 37 H 1.00898 * 110.99817 * 185.70717 * 19 18 17 38 38 H 1.00893 * 111.00350 * 309.66551 * 19 18 17 39 39 H 1.08996 * 109.47396 * 299.99922 * 20 18 17 40 40 H 1.09006 * 109.47043 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47204 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47774 * 59.99892 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4123 1.4510 -0.4630 5 1 4.0672 1.0159 0.2920 6 6 3.8033 2.9116 -0.6967 7 6 3.5503 0.6817 -1.7515 8 1 2.6896 0.1923 -2.1831 9 6 4.7755 0.6017 -2.3788 10 7 5.8236 1.1972 -1.8530 11 14 4.9466 -0.3524 -3.9756 12 1 4.0547 0.2402 -5.0044 13 1 6.3543 -0.2856 -4.4436 14 1 4.5668 -1.7699 -3.7483 15 6 1.8774 1.9937 1.3293 16 6 1.7157 3.5080 1.1822 17 6 1.5681 4.1421 2.5667 18 6 2.8148 3.8411 3.4011 19 7 3.9981 4.3971 2.7314 20 6 2.9765 2.3268 3.5482 21 6 3.1241 1.6927 2.1637 22 1 -0.3633 0.4394 -0.9290 23 1 -0.3633 -1.0242 0.0840 24 1 -0.3634 0.5849 0.8450 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.9694 3.4419 -1.1567 28 1 4.0495 3.3789 0.2568 29 1 4.6697 2.9546 -1.3568 30 1 6.6856 1.1406 -2.2942 31 1 0.9992 1.5810 1.8258 32 1 0.8277 3.7225 0.5874 33 1 2.5939 3.9207 0.6857 34 1 1.4524 5.2209 2.4619 35 1 0.6901 3.7295 3.0636 36 1 2.7094 4.2924 4.3876 37 1 4.8441 4.1324 3.2133 38 1 4.0308 4.1165 1.7628 39 1 2.0985 1.9141 4.0450 40 1 3.8649 2.1123 4.1422 41 1 3.2398 0.6139 2.2685 42 1 4.0022 2.1053 1.6667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085870702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -13.372968 kcal Electronic energy + Delta-G solvation = -19243.048956 eV Core-core repulsion = 16643.080897 eV Total energy + Delta-G solvation = -2599.968059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04245 -37.84101 -35.01867 -33.05315 -32.14206 -31.71738 -29.49604 -28.39692 -26.81632 -23.94716 -23.32428 -22.57736 -20.80178 -19.82297 -18.25295 -17.41113 -16.92161 -16.32703 -16.02614 -15.71687 -15.27423 -14.86215 -14.51344 -14.27358 -14.01757 -13.79898 -13.28862 -13.06818 -12.96891 -12.82873 -12.69459 -12.63172 -12.55493 -12.39643 -12.11509 -11.83418 -11.73791 -11.54895 -11.28763 -11.08957 -10.91234 -10.67741 -10.31577 -9.54433 -8.75221 -8.08720 -6.19524 1.41146 1.42539 1.49545 2.42592 3.18217 3.36131 3.69110 3.86755 3.94097 4.03700 4.34071 4.36522 4.39948 4.55522 4.59313 4.62533 4.69041 4.70360 4.78679 4.93416 4.99197 5.00777 5.07605 5.16082 5.18106 5.24192 5.25916 5.32507 5.38513 5.42522 5.50824 5.55439 5.65662 5.74853 5.96244 6.32206 6.35328 6.50032 6.57193 6.88133 6.99548 7.48802 8.95581 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.008322 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.665195 B = 3363.769920 C = 3976.121183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.217 3.783 5 H -0.021 1.021 6 C -0.118 4.118 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 N -0.915 5.915 11 Si 0.952 3.048 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.090 3.910 16 C -0.124 4.124 17 C -0.106 4.106 18 C 0.092 3.908 19 N -0.855 5.855 20 C -0.141 4.141 21 C -0.147 4.147 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.012 0.988 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.340 0.660 38 H 0.337 0.663 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 2.365 9.477 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 N -0.259 5.259 4 C 0.110 3.890 5 H -0.004 1.004 6 C -0.176 4.176 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.555 5.555 11 Si 0.778 3.222 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.019 4.019 16 C -0.162 4.162 17 C -0.145 4.145 18 C -0.019 4.019 19 N -0.387 5.387 20 C -0.181 4.181 21 C -0.186 4.186 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.138 3.371 9.254 12.776 hybrid contribution 1.423 -2.165 -0.651 2.671 sum -6.715 1.206 8.604 10.981 Atomic orbital electron populations 1.21688 0.93942 1.01402 1.01756 1.22098 0.96187 0.90052 0.99839 1.62318 1.22485 1.17346 1.23705 1.19042 0.83655 0.93315 0.93009 1.00358 1.21893 1.00099 0.96748 0.98865 1.21579 0.94509 1.31669 1.08401 0.92346 1.25630 0.95727 0.96751 1.00491 1.70025 1.00285 1.44478 1.40720 0.85710 0.76865 0.79240 0.80394 1.19902 1.21106 1.19907 1.21692 0.96251 0.95682 0.88266 1.21905 1.02705 0.94003 0.97574 1.21568 0.97199 1.00915 0.94781 1.21502 0.90909 0.91313 0.98212 1.59224 1.05430 1.66526 1.07532 1.22274 1.02395 0.97779 0.95672 1.22158 1.00143 0.99121 0.97179 0.93045 0.91529 0.92498 0.91524 0.97001 0.94815 0.94666 0.92899 0.93121 0.90692 0.92114 0.91274 0.91022 0.90221 0.88835 0.84782 0.84581 0.90472 0.92064 0.94623 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 10.06 71.98 0.72 -3.25 16 2 C 0.05 1.81 5.37 86.30 0.46 2.28 16 3 N -0.54 -22.23 4.21 -850.26 -3.58 -25.81 16 4 C 0.22 10.69 1.56 44.17 0.07 10.76 16 5 H -0.02 -1.14 5.85 -2.39 -0.01 -1.16 16 6 C -0.12 -5.64 7.29 71.98 0.52 -5.12 16 7 C -0.52 -28.49 7.69 25.60 0.20 -28.30 16 8 H 0.06 3.18 6.11 -2.91 -0.02 3.16 16 9 C 0.01 0.70 5.18 84.66 0.44 1.14 16 10 N -0.92 -52.23 11.39 21.45 0.24 -51.99 16 11 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 C 0.09 3.08 1.92 44.92 0.09 3.16 16 16 C -0.12 -3.92 4.67 30.59 0.14 -3.77 16 17 C -0.11 -2.65 5.64 30.60 0.17 -2.48 16 18 C 0.09 2.28 3.71 44.92 0.17 2.45 16 19 N -0.85 -24.18 9.10 -168.67 -1.53 -25.71 16 20 C -0.14 -3.68 5.55 30.59 0.17 -3.51 16 21 C -0.15 -5.07 3.64 30.60 0.11 -4.95 16 22 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.58 6.74 -2.38 -0.02 1.56 16 25 H 0.07 2.95 5.33 -2.39 -0.01 2.94 16 26 H 0.01 0.46 7.38 -2.38 -0.02 0.44 16 27 H 0.03 1.56 7.51 -2.39 -0.02 1.54 16 28 H 0.03 1.51 3.14 -2.39 -0.01 1.50 16 29 H 0.05 2.86 5.82 -2.39 -0.01 2.84 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.07 2.36 6.44 -2.39 -0.02 2.35 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.47 3.05 -2.39 -0.01 2.46 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.34 8.87 8.97 -89.70 -0.80 8.07 16 38 H 0.34 11.10 3.73 -89.70 -0.33 10.76 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.03 1.33 7.50 -2.39 -0.02 1.32 16 42 H 0.05 2.16 3.97 -2.39 -0.01 2.15 16 Total: -1.00 -57.88 292.78 0.31 -57.56 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.11 Total: 31.77 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.27 Total: -31.59 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -4.87 Total: -103.51 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -57.88 0.31 -57.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085870702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.191 kcal (2) G-P(sol) polarization free energy of solvation -57.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds