Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47117 * 2 1 4 4 C 1.46895 * 110.99994 * 75.60967 * 3 2 1 5 5 C 1.53008 * 109.47022 * 212.11823 * 4 3 2 6 6 C 1.53116 * 109.52226 * 185.25475 * 5 4 3 7 7 C 1.53037 * 109.27610 * 182.44070 * 6 5 4 8 8 N 1.46845 * 109.52371 * 59.18079 * 7 6 5 9 9 C 1.46849 * 111.19606 * 298.25626 * 8 7 6 10 10 C 1.53039 * 109.52381 * 61.74309 * 9 8 7 11 11 C 1.46897 * 110.99630 * 199.56470 * 3 2 1 12 12 H 1.08997 * 109.47302 * 300.87094 * 11 3 2 13 13 C 1.52999 * 109.47264 * 180.87165 * 11 3 2 14 14 C 1.50702 * 109.47341 * 60.87184 * 11 3 2 15 15 H 1.08000 * 120.00060 * 0.02562 * 14 11 3 16 16 C 1.37881 * 120.00031 * 179.97438 * 14 11 3 17 17 N 1.31508 * 119.99944 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99867 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47226 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46881 * 120.00131 * 18 16 14 21 21 H 1.48495 * 109.47323 * 239.99932 * 18 16 14 22 22 H 1.08998 * 109.46917 * 63.40011 * 1 2 3 23 23 H 1.08996 * 109.47210 * 183.40259 * 1 2 3 24 24 H 1.09000 * 109.46696 * 303.40750 * 1 2 3 25 25 H 1.09001 * 109.46948 * 239.99741 * 2 1 3 26 26 H 1.09001 * 109.46840 * 120.00182 * 2 1 3 27 27 H 1.09002 * 109.46862 * 92.12096 * 4 3 2 28 28 H 1.08996 * 109.47655 * 332.12175 * 4 3 2 29 29 H 1.09001 * 109.57214 * 305.41244 * 5 4 3 30 30 H 1.09004 * 109.50047 * 62.49928 * 6 5 4 31 31 H 1.08995 * 109.50560 * 302.38547 * 6 5 4 32 32 H 1.09003 * 109.45686 * 179.19697 * 7 6 5 33 33 H 1.09002 * 109.46158 * 299.17324 * 7 6 5 34 34 H 1.00897 * 110.99816 * 174.15754 * 8 7 6 35 35 H 1.09003 * 109.45877 * 181.75898 * 9 8 7 36 36 H 1.08997 * 109.46393 * 301.72445 * 9 8 7 37 37 H 1.09008 * 109.50310 * 60.76072 * 10 9 8 38 38 H 1.08992 * 109.49968 * 180.83827 * 10 9 8 39 39 H 1.09002 * 109.46779 * 308.29097 * 13 11 3 40 40 H 1.09005 * 109.47084 * 68.28432 * 13 11 3 41 41 H 1.08992 * 109.47408 * 188.28743 * 13 11 3 42 42 H 0.96996 * 120.00366 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8739 1.9949 1.3284 5 6 1.6056 3.4934 1.1748 6 6 1.5836 4.1535 2.5562 7 6 1.2548 5.6400 2.4007 8 7 -0.0518 5.7878 1.7470 9 6 -0.0407 5.2030 0.4000 10 6 0.2495 3.7035 0.4958 11 6 3.4135 1.4505 -0.4593 12 1 4.0405 0.8448 0.1950 13 6 3.8941 2.9026 -0.4250 14 6 3.5033 0.9248 -1.8688 15 1 2.6138 0.5773 -2.3732 16 6 4.7208 0.8886 -2.5148 17 7 5.8039 1.3123 -1.9008 18 14 4.8322 0.2363 -4.2617 19 1 3.4822 -0.1757 -4.7233 20 1 5.3567 1.3005 -5.1549 21 1 5.7460 -0.9336 -4.2960 22 1 -0.3633 0.4601 -0.9189 23 1 -0.3633 -1.0258 0.0610 24 1 -0.3633 0.5658 0.8579 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.7907 1.8465 1.8989 28 1 1.0401 1.5284 1.8529 29 1 2.3907 3.9446 0.5680 30 1 2.5605 4.0442 3.0273 31 1 0.8248 3.6757 3.1758 32 1 1.2243 6.1099 3.3838 33 1 2.0215 6.1198 1.7924 34 1 -0.3345 6.7559 1.7187 35 1 -1.0123 5.3557 -0.0701 36 1 0.7320 5.6850 -0.1988 37 1 -0.5305 3.2186 1.0829 38 1 0.2723 3.2727 -0.5052 39 1 3.1834 3.5332 -0.9591 40 1 3.9693 3.2361 0.6101 41 1 4.8719 2.9731 -0.9014 42 1 6.6605 1.2864 -2.3551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086703224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = -4.309523 kcal Electronic energy + Delta-G solvation = -18724.258941 eV Core-core repulsion = 16124.683903 eV Total energy + Delta-G solvation = -2599.575039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82386 -36.80686 -33.11763 -32.38170 -30.46464 -30.42780 -27.83853 -25.99576 -24.54834 -22.66932 -21.70548 -20.95246 -19.27299 -19.15797 -16.48050 -16.27734 -15.18141 -14.39457 -14.32854 -14.16979 -13.94348 -13.54754 -13.16504 -12.78690 -12.55852 -12.36141 -12.06893 -11.89473 -11.43605 -11.15686 -11.05184 -10.93376 -10.83465 -10.70445 -10.58619 -10.15372 -10.05307 -9.85804 -9.83284 -9.76008 -9.35252 -8.83118 -8.34675 -8.32640 -7.08259 -5.98593 -4.03362 3.29980 3.38104 3.42579 4.37809 4.42326 4.90625 5.17262 5.26120 5.30840 5.39027 5.53380 5.70317 5.75131 5.79737 5.91283 6.00847 6.06270 6.08794 6.13183 6.23708 6.30838 6.35617 6.47061 6.48893 6.62128 6.75127 6.81074 6.82220 6.92476 6.99095 7.07748 7.19435 7.22148 7.49013 7.55279 7.81961 7.86375 8.29818 8.40371 8.66648 9.04941 9.61709 11.07248 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.006924 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.100401 B = 4042.653383 C = 4421.611403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.064 3.936 5 C -0.096 4.096 6 C -0.113 4.113 7 C 0.061 3.939 8 N -0.691 5.691 9 C 0.056 3.944 10 C -0.097 4.097 11 C 0.213 3.787 12 H -0.005 1.005 13 C -0.134 4.134 14 C -0.498 4.498 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.334 0.666 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.011 0.989 41 H 0.084 0.916 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 5.441 6.516 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.255 5.255 4 C -0.065 4.065 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.069 4.069 8 N -0.322 5.322 9 C -0.073 4.073 10 C -0.135 4.135 11 C 0.107 3.893 12 H 0.013 0.987 13 C -0.192 4.192 14 C -0.537 4.537 15 H 0.081 0.919 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.103 0.897 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.275 5.145 6.433 12.405 hybrid contribution 1.239 -0.084 -0.796 1.475 sum -8.037 5.061 5.638 11.044 Atomic orbital electron populations 1.21793 0.96796 0.99723 1.01602 1.21966 0.94004 0.90656 1.00728 1.62090 1.24650 1.16267 1.22486 1.22012 0.98665 0.94387 0.91394 1.21601 0.98725 0.95807 0.95387 1.21625 1.00754 0.94493 0.98254 1.21881 0.89508 0.97368 0.98126 1.60334 1.29266 1.21843 1.20788 1.22003 0.99993 0.96777 0.88562 1.21461 0.96605 0.93410 1.02002 1.19257 0.81653 0.93407 0.94989 0.98715 1.21997 1.02922 0.97370 0.96879 1.21210 0.93586 1.40457 0.98425 0.91879 1.24935 0.95780 0.95671 0.97989 1.69898 0.98802 1.47519 1.37129 0.86506 0.78023 0.78490 0.84788 1.19742 1.21124 1.21212 0.92484 0.93798 0.93623 0.89599 0.96820 0.95548 0.92950 0.88991 0.92163 0.91883 0.91521 0.95386 0.84910 0.91502 0.95377 0.92587 0.90158 0.94701 0.96994 0.89734 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.04 37.16 0.37 -1.91 16 2 C 0.05 1.08 5.42 -3.82 -0.02 1.06 16 3 N -0.53 -11.17 3.75 -228.04 -0.86 -12.03 16 4 C 0.06 1.18 3.79 -3.82 -0.01 1.17 16 5 C -0.10 -1.61 1.90 -90.50 -0.17 -1.78 16 6 C -0.11 -1.62 5.38 -26.65 -0.14 -1.76 16 7 C 0.06 0.77 6.55 -3.83 -0.03 0.75 16 8 N -0.69 -8.73 6.85 -113.81 -0.78 -9.51 16 9 C 0.06 0.76 6.55 -3.83 -0.03 0.74 16 10 C -0.10 -1.52 5.24 -26.65 -0.14 -1.66 16 11 C 0.21 5.33 1.87 -68.87 -0.13 5.20 16 12 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 13 C -0.13 -3.22 7.37 37.16 0.27 -2.95 16 14 C -0.50 -13.51 7.65 -34.44 -0.26 -13.77 16 15 H 0.06 1.72 6.94 -52.49 -0.36 1.36 16 16 C 0.06 1.56 5.28 -17.82 -0.09 1.47 16 17 N -0.89 -25.46 11.29 55.43 0.63 -24.84 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.70 6.81 -51.93 -0.35 0.35 16 25 H 0.09 1.86 6.17 -51.93 -0.32 1.54 16 26 H 0.01 0.26 8.00 -51.93 -0.42 -0.15 16 27 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 28 H 0.05 0.90 6.45 -51.93 -0.34 0.56 16 29 H 0.09 1.74 4.16 -51.93 -0.22 1.52 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.33 3.48 8.90 -39.29 -0.35 3.13 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 39 H 0.03 0.82 7.15 -51.93 -0.37 0.45 16 40 H 0.01 0.25 6.13 -51.93 -0.32 -0.07 16 41 H 0.08 2.27 5.89 -51.93 -0.31 1.96 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -27.79 311.50 -9.23 -37.01 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.51 Total: 1.85 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.38 Total: -13.46 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -1.01 Total: -46.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.79 -9.23 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.704 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds