Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47117 * 2 1 4 4 C 1.46895 * 110.99994 * 75.60967 * 3 2 1 5 5 C 1.53008 * 109.47022 * 212.11823 * 4 3 2 6 6 C 1.53116 * 109.52226 * 185.25475 * 5 4 3 7 7 C 1.53037 * 109.27610 * 182.44070 * 6 5 4 8 8 N 1.46845 * 109.52371 * 59.18079 * 7 6 5 9 9 C 1.46849 * 111.19606 * 298.25626 * 8 7 6 10 10 C 1.53039 * 109.52381 * 61.74309 * 9 8 7 11 11 C 1.46897 * 110.99630 * 199.56470 * 3 2 1 12 12 H 1.08997 * 109.47302 * 300.87094 * 11 3 2 13 13 C 1.52999 * 109.47264 * 180.87165 * 11 3 2 14 14 C 1.50702 * 109.47341 * 60.87184 * 11 3 2 15 15 H 1.08000 * 120.00060 * 0.02562 * 14 11 3 16 16 C 1.37881 * 120.00031 * 179.97438 * 14 11 3 17 17 N 1.31508 * 119.99944 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99867 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47226 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46881 * 120.00131 * 18 16 14 21 21 H 1.48495 * 109.47323 * 239.99932 * 18 16 14 22 22 H 1.08998 * 109.46917 * 63.40011 * 1 2 3 23 23 H 1.08996 * 109.47210 * 183.40259 * 1 2 3 24 24 H 1.09000 * 109.46696 * 303.40750 * 1 2 3 25 25 H 1.09001 * 109.46948 * 239.99741 * 2 1 3 26 26 H 1.09001 * 109.46840 * 120.00182 * 2 1 3 27 27 H 1.09002 * 109.46862 * 92.12096 * 4 3 2 28 28 H 1.08996 * 109.47655 * 332.12175 * 4 3 2 29 29 H 1.09001 * 109.57214 * 305.41244 * 5 4 3 30 30 H 1.09004 * 109.50047 * 62.49928 * 6 5 4 31 31 H 1.08995 * 109.50560 * 302.38547 * 6 5 4 32 32 H 1.09003 * 109.45686 * 179.19697 * 7 6 5 33 33 H 1.09002 * 109.46158 * 299.17324 * 7 6 5 34 34 H 1.00897 * 110.99816 * 174.15754 * 8 7 6 35 35 H 1.09003 * 109.45877 * 181.75898 * 9 8 7 36 36 H 1.08997 * 109.46393 * 301.72445 * 9 8 7 37 37 H 1.09008 * 109.50310 * 60.76072 * 10 9 8 38 38 H 1.08992 * 109.49968 * 180.83827 * 10 9 8 39 39 H 1.09002 * 109.46779 * 308.29097 * 13 11 3 40 40 H 1.09005 * 109.47084 * 68.28432 * 13 11 3 41 41 H 1.08992 * 109.47408 * 188.28743 * 13 11 3 42 42 H 0.96996 * 120.00366 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8739 1.9949 1.3284 5 6 1.6056 3.4934 1.1748 6 6 1.5836 4.1535 2.5562 7 6 1.2548 5.6400 2.4007 8 7 -0.0518 5.7878 1.7470 9 6 -0.0407 5.2030 0.4000 10 6 0.2495 3.7035 0.4958 11 6 3.4135 1.4505 -0.4593 12 1 4.0405 0.8448 0.1950 13 6 3.8941 2.9026 -0.4250 14 6 3.5033 0.9248 -1.8688 15 1 2.6138 0.5773 -2.3732 16 6 4.7208 0.8886 -2.5148 17 7 5.8039 1.3123 -1.9008 18 14 4.8322 0.2363 -4.2617 19 1 3.4822 -0.1757 -4.7233 20 1 5.3567 1.3005 -5.1549 21 1 5.7460 -0.9336 -4.2960 22 1 -0.3633 0.4601 -0.9189 23 1 -0.3633 -1.0258 0.0610 24 1 -0.3633 0.5658 0.8579 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.7907 1.8465 1.8989 28 1 1.0401 1.5284 1.8529 29 1 2.3907 3.9446 0.5680 30 1 2.5605 4.0442 3.0273 31 1 0.8248 3.6757 3.1758 32 1 1.2243 6.1099 3.3838 33 1 2.0215 6.1198 1.7924 34 1 -0.3345 6.7559 1.7187 35 1 -1.0123 5.3557 -0.0701 36 1 0.7320 5.6850 -0.1988 37 1 -0.5305 3.2186 1.0829 38 1 0.2723 3.2727 -0.5052 39 1 3.1834 3.5332 -0.9591 40 1 3.9693 3.2361 0.6101 41 1 4.8719 2.9731 -0.9014 42 1 6.6605 1.2864 -2.3551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086703224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = -22.211659 kcal Electronic energy + Delta-G solvation = -18725.035236 eV Core-core repulsion = 16124.683903 eV Total energy + Delta-G solvation = -2600.351333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19985 -38.29689 -35.07219 -33.70954 -32.21594 -31.58722 -29.50157 -27.73608 -26.31952 -23.81476 -23.04992 -22.64964 -21.00816 -20.44340 -18.38441 -17.55600 -16.98124 -15.99654 -15.82924 -15.52672 -15.39946 -14.80589 -14.66074 -14.51701 -13.95961 -13.88708 -13.56996 -13.08927 -13.00477 -12.88565 -12.74150 -12.50074 -12.44570 -12.38156 -12.03971 -12.00110 -11.79921 -11.50488 -11.26069 -11.09665 -11.00802 -10.74597 -10.39285 -9.35391 -8.84792 -8.09775 -6.21901 1.40018 1.42116 1.53802 2.42294 3.16903 3.35770 3.38631 3.97238 4.04283 4.13023 4.31936 4.39921 4.53194 4.55606 4.61759 4.66967 4.72872 4.77761 4.82843 4.89612 4.98571 4.99476 5.03309 5.07138 5.14044 5.14721 5.18493 5.29790 5.38476 5.41768 5.51898 5.57814 5.63004 5.74565 5.89765 6.13459 6.31622 6.49297 6.59687 6.81529 6.95399 7.47387 8.95319 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.006924 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.100401 B = 4042.653383 C = 4421.611403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.066 3.934 5 C -0.093 4.093 6 C -0.109 4.109 7 C 0.062 3.938 8 N -0.690 5.690 9 C 0.060 3.940 10 C -0.090 4.090 11 C 0.219 3.781 12 H -0.046 1.046 13 C -0.115 4.115 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.282 1.282 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.013 0.987 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.350 0.650 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.026 0.974 41 H 0.055 0.945 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 6.000 6.870 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.062 4.062 5 C -0.112 4.112 6 C -0.147 4.147 7 C -0.067 4.067 8 N -0.322 5.322 9 C -0.070 4.070 10 C -0.128 4.128 11 C 0.112 3.888 12 H -0.028 1.028 13 C -0.172 4.172 14 C -0.550 4.550 15 H 0.076 0.924 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.208 1.208 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.169 0.831 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.054 5.715 6.798 14.179 hybrid contribution 1.777 -0.282 -0.847 1.989 sum -9.277 5.432 5.951 12.288 Atomic orbital electron populations 1.21668 0.93534 1.01480 1.01847 1.22029 0.96587 0.89637 0.99456 1.62104 1.21790 1.17323 1.24245 1.22091 0.98534 0.95741 0.89837 1.21500 0.98573 0.94302 0.96804 1.21585 1.01115 0.95551 0.96480 1.21882 0.89426 0.96143 0.99283 1.60301 1.28994 1.23098 1.19828 1.21921 1.00552 0.95203 0.89282 1.21350 0.95928 0.95003 1.00552 1.19047 0.83311 0.92930 0.93541 1.02825 1.21762 1.01110 0.96944 0.97427 1.21445 0.93535 1.40602 0.99394 0.92412 1.25705 0.95458 0.95904 1.01825 1.70028 0.99220 1.48301 1.38658 0.85506 0.78132 0.77893 0.80109 1.19123 1.20688 1.20806 0.92923 0.91413 0.92476 0.92162 0.96855 0.97144 0.91143 0.91491 0.92133 0.91236 0.89184 0.96095 0.83112 0.89820 0.96409 0.92065 0.92364 0.94597 0.95520 0.92611 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 10.04 71.98 0.72 -3.18 16 2 C 0.05 2.01 5.42 86.31 0.47 2.48 16 3 N -0.53 -22.60 3.75 -875.37 -3.29 -25.89 16 4 C 0.07 2.42 3.79 86.31 0.33 2.74 16 5 C -0.09 -3.02 1.90 -10.71 -0.02 -3.04 16 6 C -0.11 -2.92 5.38 30.65 0.16 -2.75 16 7 C 0.06 1.43 6.55 86.33 0.57 2.00 16 8 N -0.69 -15.46 6.85 -514.00 -3.52 -18.97 16 9 C 0.06 1.52 6.55 86.33 0.57 2.08 16 10 C -0.09 -2.71 5.24 30.65 0.16 -2.55 16 11 C 0.22 11.31 1.87 44.17 0.08 11.39 16 12 H -0.05 -2.68 8.14 -2.39 -0.02 -2.70 16 13 C -0.11 -5.68 7.37 71.98 0.53 -5.15 16 14 C -0.51 -28.40 7.65 25.60 0.20 -28.20 16 15 H 0.06 3.21 6.94 -2.91 -0.02 3.19 16 16 C 0.01 0.51 5.28 84.66 0.45 0.96 16 17 N -0.92 -53.78 11.29 21.45 0.24 -53.54 16 18 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.61 6.81 -2.39 -0.02 1.59 16 25 H 0.06 2.66 6.17 -2.39 -0.01 2.65 16 26 H 0.01 0.51 8.00 -2.39 -0.02 0.50 16 27 H 0.01 0.41 7.54 -2.39 -0.02 0.39 16 28 H 0.07 2.31 6.45 -2.39 -0.02 2.29 16 29 H 0.07 2.53 4.16 -2.39 -0.01 2.52 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.35 6.18 8.90 -89.70 -0.80 5.38 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.06 2.00 7.85 -2.39 -0.02 1.98 16 39 H 0.04 1.72 7.15 -2.39 -0.02 1.71 16 40 H 0.03 1.19 6.13 -2.38 -0.01 1.18 16 41 H 0.06 3.09 5.89 -2.39 -0.01 3.07 16 42 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -60.27 311.50 -0.15 -60.41 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.18 Total: 15.03 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.21 Total: -23.21 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -6.56 Total: -98.40 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.27 -0.15 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.203 kcal (2) G-P(sol) polarization free energy of solvation -60.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds