Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46667 * 2 1 4 4 C 1.50695 * 109.47175 * 120.00572 * 2 1 3 5 5 H 1.07997 * 120.00346 * 120.00095 * 4 2 1 6 6 C 1.37877 * 119.99762 * 299.99669 * 4 2 1 7 7 N 1.31518 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47157 * 89.99981 * 8 6 4 10 10 H 1.48500 * 109.47338 * 210.00369 * 8 6 4 11 11 H 1.48504 * 109.46843 * 329.99845 * 8 6 4 12 12 N 1.46900 * 109.46700 * 240.00362 * 2 1 3 13 13 C 1.46897 * 111.00315 * 306.03994 * 12 2 1 14 14 C 1.46901 * 111.00333 * 70.00235 * 12 2 1 15 15 C 1.52999 * 109.47563 * 158.12343 * 14 12 2 16 16 N 1.46906 * 112.84441 * 288.55868 * 15 14 12 17 17 C 1.46889 * 111.00227 * 305.67736 * 16 15 14 18 18 C 1.46902 * 111.00088 * 69.63758 * 16 15 14 19 19 C 1.53779 * 113.61744 * 157.36392 * 15 14 12 20 20 C 1.53956 * 87.01586 * 220.04812 * 19 15 14 21 21 C 1.53772 * 87.11614 * 25.36134 * 20 19 15 22 22 H 1.09001 * 109.46970 * 59.99989 * 1 2 3 23 23 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47047 * 299.99830 * 1 2 3 25 25 H 0.96991 * 120.00597 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47364 * 194.29647 * 13 12 2 27 27 H 1.09003 * 109.46928 * 74.30298 * 13 12 2 28 28 H 1.08991 * 109.47212 * 314.30297 * 13 12 2 29 29 H 1.09003 * 109.47090 * 278.12093 * 14 12 2 30 30 H 1.08997 * 109.47067 * 38.12148 * 14 12 2 31 31 H 1.08997 * 109.47145 * 66.26640 * 17 16 15 32 32 H 1.09000 * 109.47216 * 186.26526 * 17 16 15 33 33 H 1.09007 * 109.47222 * 306.26416 * 17 16 15 34 34 H 1.08996 * 109.47308 * 59.99593 * 18 16 15 35 35 H 1.08991 * 109.47189 * 179.97438 * 18 16 15 36 36 H 1.09003 * 109.46570 * 299.99458 * 18 16 15 37 37 H 1.09003 * 113.61392 * 334.56583 * 19 15 14 38 38 H 1.09000 * 113.61305 * 105.46852 * 19 15 14 39 39 H 1.08998 * 113.53680 * 270.80619 * 20 19 15 40 40 H 1.09001 * 113.74058 * 139.94707 * 20 19 15 41 41 H 1.08994 * 113.61744 * 220.09278 * 21 20 19 42 42 H 1.09005 * 113.69005 * 89.19422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7120 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4091 15 6 2.7076 -0.3372 -3.5229 16 7 4.0927 0.0912 -3.2862 17 6 4.1640 1.5406 -3.0589 18 6 4.6879 -0.6475 -2.1645 19 6 2.1950 -0.0116 -4.9357 20 6 2.7466 -1.3834 -5.3648 21 6 2.5781 -1.8223 -3.9007 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1607 3.4844 26 1 1.9909 -2.6160 -2.0437 27 1 0.3935 -1.9539 -1.6213 28 1 1.4843 -2.5328 -0.3394 29 1 0.7236 -0.0647 -2.7292 30 1 1.9040 1.1550 -2.1931 31 1 3.6568 1.7875 -2.1263 32 1 5.2080 1.8478 -2.9972 33 1 3.6801 2.0621 -3.8848 34 1 4.6855 -1.7140 -2.3896 35 1 5.7132 -0.3112 -2.0112 36 1 4.1065 -0.4657 -1.2605 37 1 1.1094 0.0620 -5.0001 38 1 2.7058 0.8308 -5.4021 39 1 3.7851 -1.3512 -5.6942 40 1 2.0990 -1.9193 -6.0586 41 1 3.3977 -2.4395 -3.5328 42 1 1.5979 -2.2450 -3.6803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097927965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = 45.602597 kcal Electronic energy + Delta-G solvation = -19134.495486 eV Core-core repulsion = 16537.084800 eV Total energy + Delta-G solvation = -2597.410687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93057 -36.47712 -34.45750 -32.64077 -29.06916 -28.11007 -26.88543 -25.28300 -25.01097 -24.60528 -23.08133 -21.34662 -19.20133 -18.04010 -16.28527 -15.80518 -15.33777 -14.92480 -14.32204 -13.97742 -13.90852 -13.52379 -12.92581 -12.74489 -12.44051 -12.10461 -11.82260 -11.58488 -11.39674 -11.32913 -11.12874 -10.98461 -10.90219 -10.74767 -10.58715 -10.55028 -10.36574 -10.10478 -10.05457 -9.70597 -9.49721 -8.89664 -8.39819 -7.94202 -6.91362 -6.02172 -4.05893 3.29793 3.36366 3.39522 4.35439 4.39828 4.74323 4.98061 5.13204 5.29208 5.32590 5.39104 5.56312 5.85243 5.92048 5.93429 5.97621 6.05636 6.09976 6.13106 6.18536 6.22977 6.25697 6.37899 6.45528 6.47853 6.58122 6.64392 6.73908 6.83503 6.89280 7.03357 7.14671 7.44181 7.56262 7.62137 7.71401 7.83275 8.13492 8.38183 8.59051 9.00616 9.59347 11.04867 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.007062 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.438778 B = 3964.029575 C = 4089.328174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.524 5.524 13 C 0.024 3.976 14 C 0.037 3.963 15 C 0.096 3.904 16 N -0.516 5.516 17 C 0.023 3.977 18 C 0.013 3.987 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.126 4.126 22 H 0.003 0.997 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.260 0.740 26 H 0.056 0.944 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -2.120 -12.018 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.247 5.247 13 C -0.124 4.124 14 C -0.093 4.093 15 C 0.005 3.995 16 N -0.239 5.239 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.167 4.167 20 C -0.169 4.169 21 C -0.163 4.163 22 H 0.022 0.978 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.371 -2.165 -12.230 12.869 hybrid contribution -1.168 -0.013 1.609 1.988 sum 2.203 -2.179 -10.621 11.063 Atomic orbital electron populations 1.22390 1.00905 0.99276 1.00272 1.19338 0.89725 0.94211 0.86324 0.94869 1.21099 1.30429 1.12414 0.89624 0.91970 1.24931 0.95237 0.95142 0.99001 1.69885 1.37062 1.23157 1.23356 0.86540 0.78502 0.80008 0.82589 1.20725 1.21423 1.19963 1.62316 1.57949 1.02411 1.02048 1.22571 0.95564 0.92210 1.02066 1.22630 0.96279 0.98380 0.92054 1.22116 0.88503 0.95960 0.92919 1.62202 1.15505 1.04465 1.41737 1.22311 1.01128 0.88902 1.00168 1.22577 0.98297 0.97671 0.94936 1.22986 0.99769 0.97929 0.96048 1.22754 1.01012 0.96563 0.96577 1.23125 1.01825 0.95944 0.95410 0.97753 0.95156 0.89525 0.93050 0.92519 0.97114 0.91000 0.95375 0.91695 0.94624 0.92133 0.92416 0.92554 0.93602 0.89652 0.90533 0.91507 0.90082 0.92605 0.91026 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.29 37.16 0.31 -3.78 16 2 C 0.21 5.16 2.28 -68.86 -0.16 5.01 16 3 H 0.03 0.91 7.81 -51.93 -0.41 0.51 16 4 C -0.50 -13.31 7.76 -34.44 -0.27 -13.58 16 5 H 0.06 1.67 7.23 -52.49 -0.38 1.29 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.52 -10.71 1.99 -236.29 -0.47 -11.18 16 13 C 0.02 0.46 7.35 60.06 0.44 0.90 16 14 C 0.04 0.67 3.61 -3.82 -0.01 0.65 16 15 C 0.10 1.47 0.34 -130.79 -0.04 1.43 16 16 N -0.52 -8.10 4.81 -234.46 -1.13 -9.23 16 17 C 0.02 0.35 8.90 60.06 0.53 0.88 16 18 C 0.01 0.22 8.95 60.07 0.54 0.75 16 19 C -0.13 -1.71 7.19 -25.83 -0.19 -1.89 16 20 C -0.13 -1.64 8.00 -25.83 -0.21 -1.85 16 21 C -0.13 -1.78 4.90 -25.92 -0.13 -1.91 16 22 H 0.00 0.08 7.22 -51.93 -0.38 -0.30 16 23 H 0.03 0.71 6.65 -51.93 -0.35 0.36 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.06 0.95 4.78 -51.93 -0.25 0.70 16 27 H 0.01 0.20 6.81 -51.93 -0.35 -0.16 16 28 H 0.07 1.51 6.60 -51.93 -0.34 1.17 16 29 H 0.03 0.52 7.11 -51.93 -0.37 0.15 16 30 H 0.06 1.25 5.78 -51.93 -0.30 0.95 16 31 H 0.04 0.61 6.63 -51.93 -0.34 0.26 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.78 7.25 -51.93 -0.38 0.41 16 34 H 0.06 0.91 6.41 -51.93 -0.33 0.58 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.70 5.76 -51.93 -0.30 1.40 16 37 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 38 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.06 6.22 -51.93 -0.32 0.73 16 42 H 0.08 1.18 6.40 -51.93 -0.33 0.85 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -27.04 302.88 -7.77 -34.81 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.07 Total: 1.45 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 0.73 Total: -11.89 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.97 Total: -45.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.04 -7.77 -34.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097927965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.414 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds