Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46667 * 2 1 4 4 C 1.50695 * 109.47175 * 120.00572 * 2 1 3 5 5 H 1.07997 * 120.00346 * 120.00095 * 4 2 1 6 6 C 1.37877 * 119.99762 * 299.99669 * 4 2 1 7 7 N 1.31518 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47157 * 89.99981 * 8 6 4 10 10 H 1.48500 * 109.47338 * 210.00369 * 8 6 4 11 11 H 1.48504 * 109.46843 * 329.99845 * 8 6 4 12 12 N 1.46900 * 109.46700 * 240.00362 * 2 1 3 13 13 C 1.46897 * 111.00315 * 306.03994 * 12 2 1 14 14 C 1.46901 * 111.00333 * 70.00235 * 12 2 1 15 15 C 1.52999 * 109.47563 * 158.12343 * 14 12 2 16 16 N 1.46906 * 112.84441 * 288.55868 * 15 14 12 17 17 C 1.46889 * 111.00227 * 305.67736 * 16 15 14 18 18 C 1.46902 * 111.00088 * 69.63758 * 16 15 14 19 19 C 1.53779 * 113.61744 * 157.36392 * 15 14 12 20 20 C 1.53956 * 87.01586 * 220.04812 * 19 15 14 21 21 C 1.53772 * 87.11614 * 25.36134 * 20 19 15 22 22 H 1.09001 * 109.46970 * 59.99989 * 1 2 3 23 23 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47047 * 299.99830 * 1 2 3 25 25 H 0.96991 * 120.00597 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47364 * 194.29647 * 13 12 2 27 27 H 1.09003 * 109.46928 * 74.30298 * 13 12 2 28 28 H 1.08991 * 109.47212 * 314.30297 * 13 12 2 29 29 H 1.09003 * 109.47090 * 278.12093 * 14 12 2 30 30 H 1.08997 * 109.47067 * 38.12148 * 14 12 2 31 31 H 1.08997 * 109.47145 * 66.26640 * 17 16 15 32 32 H 1.09000 * 109.47216 * 186.26526 * 17 16 15 33 33 H 1.09007 * 109.47222 * 306.26416 * 17 16 15 34 34 H 1.08996 * 109.47308 * 59.99593 * 18 16 15 35 35 H 1.08991 * 109.47189 * 179.97438 * 18 16 15 36 36 H 1.09003 * 109.46570 * 299.99458 * 18 16 15 37 37 H 1.09003 * 113.61392 * 334.56583 * 19 15 14 38 38 H 1.09000 * 113.61305 * 105.46852 * 19 15 14 39 39 H 1.08998 * 113.53680 * 270.80619 * 20 19 15 40 40 H 1.09001 * 113.74058 * 139.94707 * 20 19 15 41 41 H 1.08994 * 113.61744 * 220.09278 * 21 20 19 42 42 H 1.09005 * 113.69005 * 89.19422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7120 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4091 15 6 2.7076 -0.3372 -3.5229 16 7 4.0927 0.0912 -3.2862 17 6 4.1640 1.5406 -3.0589 18 6 4.6879 -0.6475 -2.1645 19 6 2.1950 -0.0116 -4.9357 20 6 2.7466 -1.3834 -5.3648 21 6 2.5781 -1.8223 -3.9007 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1607 3.4844 26 1 1.9909 -2.6160 -2.0437 27 1 0.3935 -1.9539 -1.6213 28 1 1.4843 -2.5328 -0.3394 29 1 0.7236 -0.0647 -2.7292 30 1 1.9040 1.1550 -2.1931 31 1 3.6568 1.7875 -2.1263 32 1 5.2080 1.8478 -2.9972 33 1 3.6801 2.0621 -3.8848 34 1 4.6855 -1.7140 -2.3896 35 1 5.7132 -0.3112 -2.0112 36 1 4.1065 -0.4657 -1.2605 37 1 1.1094 0.0620 -5.0001 38 1 2.7058 0.8308 -5.4021 39 1 3.7851 -1.3512 -5.6942 40 1 2.0990 -1.9193 -6.0586 41 1 3.3977 -2.4395 -3.5328 42 1 1.5979 -2.2450 -3.6803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097927965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = 29.834049 kcal Electronic energy + Delta-G solvation = -19135.179262 eV Core-core repulsion = 16537.084800 eV Total energy + Delta-G solvation = -2598.094462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20874 -38.16620 -35.66702 -34.64033 -30.92916 -29.50609 -28.24663 -27.29810 -26.47861 -25.81541 -24.54815 -22.69218 -20.96173 -19.28874 -18.21388 -17.14365 -17.04967 -16.42116 -15.91654 -15.48305 -15.39277 -14.81558 -14.44047 -14.31836 -14.15850 -13.55133 -13.29284 -13.17021 -12.91319 -12.72661 -12.69539 -12.60658 -12.50532 -12.31183 -12.21214 -12.09004 -11.99454 -11.91220 -11.42927 -11.10665 -10.88429 -10.68708 -10.50582 -9.40118 -8.48345 -8.11834 -6.22280 1.40734 1.41625 1.51541 2.41358 3.11070 3.17442 3.33240 3.80633 3.98533 4.09888 4.14641 4.32633 4.52956 4.58583 4.63204 4.67519 4.75276 4.78118 4.80858 4.85362 4.87775 4.91156 4.93589 5.03946 5.10566 5.15505 5.19401 5.23276 5.26708 5.48852 5.53229 5.56352 5.61992 5.68898 5.77205 6.20211 6.25401 6.35344 6.51987 6.74727 6.92324 7.47134 8.94376 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.007062 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.438778 B = 3964.029575 C = 4089.328174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.524 5.524 13 C 0.030 3.970 14 C 0.041 3.959 15 C 0.088 3.912 16 N -0.509 5.509 17 C 0.027 3.973 18 C 0.020 3.980 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.127 4.127 22 H 0.017 0.983 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.260 0.740 26 H 0.084 0.916 27 H 0.013 0.987 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -3.206 -13.597 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.013 0.987 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.246 5.246 13 C -0.118 4.118 14 C -0.089 4.089 15 C -0.003 4.003 16 N -0.232 5.232 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.165 4.165 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.891 -3.259 -13.830 14.732 hybrid contribution -1.323 0.357 2.060 2.474 sum 2.568 -2.902 -11.770 12.391 Atomic orbital electron populations 1.22196 1.00649 0.99067 0.99523 1.19046 0.89685 0.92387 0.87792 0.98661 1.21346 1.30227 1.12264 0.90745 0.92449 1.25689 0.95462 0.95819 1.01854 1.70017 1.38065 1.24388 1.23893 0.85566 0.77890 0.79159 0.79062 1.20409 1.21141 1.19213 1.62282 1.57825 1.02905 1.01618 1.22560 0.96140 0.91409 1.01649 1.22678 0.97223 0.97121 0.91857 1.22274 0.87638 0.97408 0.93008 1.62274 1.15586 1.04633 1.40724 1.22322 1.01805 0.88742 0.99323 1.22446 0.98305 0.98267 0.93794 1.22990 1.00332 0.98867 0.93858 1.22664 1.01510 0.95657 0.95547 1.23130 1.01709 0.94684 0.96957 0.96365 0.94883 0.92294 0.93099 0.89780 0.96834 0.93167 0.95357 0.93548 0.97535 0.90832 0.90789 0.91991 0.92669 0.93111 0.89773 0.90858 0.89930 0.90553 0.91481 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.62 8.29 71.98 0.60 -7.03 16 2 C 0.22 11.03 2.28 44.17 0.10 11.13 16 3 H 0.00 -0.26 7.81 -2.39 -0.02 -0.28 16 4 C -0.51 -27.72 7.76 25.60 0.20 -27.52 16 5 H 0.06 3.13 7.23 -2.91 -0.02 3.11 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 8 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.52 -21.56 1.99 -901.48 -1.79 -23.35 16 13 C 0.03 1.14 7.35 127.69 0.94 2.08 16 14 C 0.04 1.48 3.61 86.30 0.31 1.79 16 15 C 0.09 2.54 0.34 4.05 0.00 2.54 16 16 N -0.51 -15.26 4.81 -895.71 -4.31 -19.57 16 17 C 0.03 0.77 8.90 127.69 1.14 1.91 16 18 C 0.02 0.66 8.95 127.69 1.14 1.80 16 19 C -0.12 -2.87 7.19 31.18 0.22 -2.64 16 20 C -0.12 -2.48 8.00 31.18 0.25 -2.23 16 21 C -0.13 -3.28 4.90 31.12 0.15 -3.12 16 22 H 0.02 0.80 7.22 -2.39 -0.02 0.78 16 23 H 0.03 1.56 6.65 -2.39 -0.02 1.54 16 24 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.08 2.68 4.78 -2.39 -0.01 2.67 16 27 H 0.01 0.49 6.81 -2.39 -0.02 0.47 16 28 H 0.05 2.09 6.60 -2.39 -0.02 2.08 16 29 H 0.03 1.01 7.11 -2.39 -0.02 0.99 16 30 H 0.05 1.83 5.78 -2.39 -0.01 1.81 16 31 H 0.01 0.21 6.63 -2.39 -0.02 0.20 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.89 7.25 -2.38 -0.02 1.87 16 34 H 0.06 1.93 6.41 -2.39 -0.02 1.91 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 2.04 5.76 -2.39 -0.01 2.03 16 37 H 0.08 1.87 7.96 -2.39 -0.02 1.85 16 38 H 0.07 1.65 7.44 -2.39 -0.02 1.63 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.80 6.22 -2.39 -0.01 1.79 16 42 H 0.08 2.16 6.40 -2.38 -0.02 2.14 16 Total: -1.00 -58.38 302.88 2.65 -55.74 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.98 Total: 14.85 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 5.50 Total: -20.30 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.86 Total: -96.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -58.38 2.65 -55.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097927965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.569 kcal (2) G-P(sol) polarization free energy of solvation -58.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds