Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.50694 * 109.47282 * 240.00475 * 2 1 3 5 5 H 1.08011 * 120.00294 * 240.00018 * 4 2 1 6 6 C 1.37882 * 120.00394 * 59.99768 * 4 2 1 7 7 N 1.31514 * 119.99628 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47239 * 60.00298 * 8 6 4 10 10 H 1.48503 * 109.46757 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47412 * 300.00096 * 8 6 4 12 12 N 1.46901 * 109.47391 * 120.00207 * 2 1 3 13 13 C 1.46898 * 110.99646 * 58.95360 * 12 2 1 14 14 C 1.46905 * 110.99905 * 295.00329 * 12 2 1 15 15 C 1.53000 * 109.46755 * 189.99950 * 14 12 2 16 16 N 1.46896 * 112.85261 * 43.04043 * 15 14 12 17 17 C 1.46898 * 111.00410 * 63.36497 * 16 15 14 18 18 C 1.46906 * 110.99876 * 187.31907 * 16 15 14 19 19 C 1.53776 * 113.61011 * 271.83698 * 15 14 12 20 20 C 1.53955 * 87.02052 * 220.05120 * 19 15 14 21 21 C 1.53779 * 87.10990 * 25.36699 * 20 19 15 22 22 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46811 * 299.99938 * 1 2 3 24 24 H 1.09001 * 109.46768 * 59.99753 * 1 2 3 25 25 H 0.96996 * 119.99935 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47220 * 60.00453 * 13 12 2 27 27 H 1.09002 * 109.46853 * 180.02562 * 13 12 2 28 28 H 1.09004 * 109.47467 * 299.99821 * 13 12 2 29 29 H 1.09002 * 109.46763 * 309.99670 * 14 12 2 30 30 H 1.09001 * 109.47374 * 69.99548 * 14 12 2 31 31 H 1.09002 * 109.46873 * 64.96535 * 17 16 15 32 32 H 1.08996 * 109.47111 * 184.97147 * 17 16 15 33 33 H 1.09006 * 109.46938 * 304.97364 * 17 16 15 34 34 H 1.08999 * 109.46849 * 52.98849 * 18 16 15 35 35 H 1.08993 * 109.46881 * 172.98585 * 18 16 15 36 36 H 1.08996 * 109.47038 * 292.98905 * 18 16 15 37 37 H 1.08996 * 113.62265 * 334.57047 * 19 15 14 38 38 H 1.08999 * 113.61335 * 105.48084 * 19 15 14 39 39 H 1.09001 * 113.54393 * 270.81592 * 20 19 15 40 40 H 1.09004 * 113.74299 * 139.94331 * 20 19 15 41 41 H 1.09003 * 113.61434 * 220.09071 * 21 20 19 42 42 H 1.09005 * 113.69307 * 89.19872 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8260 -0.4203 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3790 -0.5664 3.6185 16 7 3.7878 -0.8709 3.3350 17 6 4.5408 0.3537 3.0332 18 6 4.4021 -1.6055 4.4491 19 6 1.6186 -1.7277 4.2803 20 6 2.0697 -1.1464 5.6327 21 6 2.1688 0.2157 4.9259 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1620 -3.4843 26 1 1.8763 -2.6150 0.3646 27 1 1.9054 -2.5656 2.1438 28 1 0.4385 -2.0743 1.2639 29 1 1.9298 1.0869 2.3125 30 1 0.5722 -0.0346 2.5726 31 1 4.5688 0.9902 3.9176 32 1 5.5578 0.0922 2.7412 33 1 4.0542 0.8874 2.2167 34 1 3.7947 -2.4788 4.6872 35 1 5.4039 -1.9265 4.1641 36 1 4.4632 -0.9563 5.3225 37 1 0.5404 -1.6881 4.1259 38 1 2.0428 -2.7078 4.0622 39 1 3.0304 -1.5323 5.9738 40 1 1.3008 -1.1829 6.4044 41 1 3.0364 0.8023 5.2280 42 1 1.2419 0.7889 4.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097927966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = 55.019828 kcal Electronic energy + Delta-G solvation = -18979.378435 eV Core-core repulsion = 16382.376111 eV Total energy + Delta-G solvation = -2597.002325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42265 -36.59020 -33.92171 -32.59255 -29.43897 -28.11610 -26.58835 -25.58125 -25.11588 -24.70782 -22.96594 -21.29828 -19.03118 -18.44947 -16.32631 -15.86988 -15.29302 -14.78639 -14.49832 -13.89379 -13.82128 -13.46187 -13.23199 -12.63887 -12.44422 -12.21547 -12.16785 -11.72211 -11.50506 -11.39067 -11.13285 -10.94154 -10.85190 -10.71146 -10.53657 -10.42250 -10.31818 -10.26531 -9.93249 -9.82042 -9.42149 -8.75095 -8.29128 -7.76922 -6.85399 -5.91739 -3.94080 3.38657 3.42229 3.46010 4.19590 4.49698 4.73571 4.75150 4.97236 5.02137 5.37614 5.40865 5.46243 5.55486 5.71485 5.76487 5.84329 5.86556 5.93473 5.97423 6.05131 6.12734 6.24460 6.27886 6.35967 6.42602 6.48568 6.54827 6.62910 6.81300 6.94406 7.08411 7.24577 7.48608 7.51333 7.66946 7.84460 7.97202 8.28865 8.55897 8.78173 9.13324 9.70572 11.15599 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036278 B = 0.006577 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.627809 B = 4256.245665 C = 4475.469565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.277 1.277 12 N -0.512 5.512 13 C 0.040 3.960 14 C 0.076 3.924 15 C 0.104 3.896 16 N -0.490 5.490 17 C 0.034 3.966 18 C 0.015 3.985 19 C -0.130 4.130 20 C -0.160 4.160 21 C -0.170 4.170 22 H 0.029 0.971 23 H 0.004 0.996 24 H 0.085 0.915 25 H 0.259 0.741 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.007 0.993 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -2.637 14.458 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.234 5.234 13 C -0.109 4.109 14 C -0.054 4.054 15 C 0.012 3.988 16 N -0.211 5.211 17 C -0.114 4.114 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.197 4.197 21 C -0.210 4.210 22 H 0.048 0.952 23 H 0.023 0.977 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.198 -2.841 13.838 14.484 hybrid contribution -0.732 0.212 -0.109 0.770 sum 2.466 -2.629 13.729 14.194 Atomic orbital electron populations 1.22408 1.01334 0.99209 1.00212 1.19303 0.89374 0.94426 0.86608 0.94774 1.21118 1.30050 1.12278 0.89674 0.91958 1.24926 0.95390 0.95181 0.98924 1.69882 1.37418 1.23212 1.23270 0.86613 0.79213 0.79596 0.82258 1.20473 1.21551 1.20291 1.62216 1.58809 1.01480 1.00910 1.22235 0.95962 0.91515 1.01145 1.21924 0.95427 0.97505 0.90509 1.22226 0.89283 0.94811 0.92440 1.61810 1.00005 1.22121 1.37201 1.22282 0.98422 0.90849 0.99833 1.22768 0.99730 0.98476 0.92388 1.23211 1.00112 0.98655 0.94803 1.23373 1.02082 0.97275 0.97007 1.23545 1.01923 0.96852 0.98702 0.95159 0.97665 0.89588 0.93144 0.91637 0.93117 0.97477 0.92085 0.95400 0.96911 0.91979 0.90046 0.91123 0.92137 0.95916 0.89992 0.90710 0.89038 0.92150 0.91939 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.28 37.16 0.31 -3.94 16 2 C 0.21 5.32 2.34 -68.87 -0.16 5.16 16 3 H 0.03 0.96 8.03 -51.93 -0.42 0.54 16 4 C -0.49 -13.67 7.94 -34.44 -0.27 -13.94 16 5 H 0.06 1.75 6.75 -52.48 -0.35 1.39 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.96 11.32 55.43 0.63 -25.34 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.51 -11.03 4.34 -236.28 -1.03 -12.05 16 13 C 0.04 0.81 8.44 60.06 0.51 1.32 16 14 C 0.08 1.39 3.27 -3.82 -0.01 1.38 16 15 C 0.10 1.56 0.40 -130.79 -0.05 1.51 16 16 N -0.49 -7.53 4.63 -234.46 -1.08 -8.61 16 17 C 0.03 0.51 9.25 60.06 0.56 1.07 16 18 C 0.01 0.18 7.78 60.07 0.47 0.65 16 19 C -0.13 -1.74 5.17 -25.83 -0.13 -1.88 16 20 C -0.16 -1.83 7.28 -25.83 -0.19 -2.02 16 21 C -0.17 -2.19 6.70 -25.92 -0.17 -2.36 16 22 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 23 H 0.00 0.10 6.75 -51.93 -0.35 -0.25 16 24 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.06 1.45 6.53 -51.93 -0.34 1.11 16 27 H 0.05 0.92 5.14 -51.93 -0.27 0.65 16 28 H 0.01 0.14 6.28 -51.93 -0.33 -0.18 16 29 H 0.06 1.16 7.41 -51.93 -0.38 0.77 16 30 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 31 H 0.01 0.17 6.90 -51.93 -0.36 -0.19 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.41 6.85 -51.93 -0.36 1.06 16 34 H 0.07 0.83 5.29 -51.93 -0.27 0.56 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.26 6.20 -51.93 -0.32 -0.06 16 37 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 38 H 0.07 1.01 6.11 -51.93 -0.32 0.70 16 39 H 0.09 0.98 4.67 -51.93 -0.24 0.73 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16 42 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 300.65 15.07 4.53 4.53 Total: -1.00 -28.44 300.65 -8.10 -36.55 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.88 Total: -0.22 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 0.75 Total: -11.59 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.48 Total: -46.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.44 -8.10 -36.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097927966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.567 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds