Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.50694 * 109.47282 * 240.00475 * 2 1 3 5 5 H 1.08011 * 120.00294 * 240.00018 * 4 2 1 6 6 C 1.37882 * 120.00394 * 59.99768 * 4 2 1 7 7 N 1.31514 * 119.99628 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47239 * 60.00298 * 8 6 4 10 10 H 1.48503 * 109.46757 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47412 * 300.00096 * 8 6 4 12 12 N 1.46901 * 109.47391 * 120.00207 * 2 1 3 13 13 C 1.46898 * 110.99646 * 58.95360 * 12 2 1 14 14 C 1.46905 * 110.99905 * 295.00329 * 12 2 1 15 15 C 1.53000 * 109.46755 * 189.99950 * 14 12 2 16 16 N 1.46896 * 112.85261 * 43.04043 * 15 14 12 17 17 C 1.46898 * 111.00410 * 63.36497 * 16 15 14 18 18 C 1.46906 * 110.99876 * 187.31907 * 16 15 14 19 19 C 1.53776 * 113.61011 * 271.83698 * 15 14 12 20 20 C 1.53955 * 87.02052 * 220.05120 * 19 15 14 21 21 C 1.53779 * 87.10990 * 25.36699 * 20 19 15 22 22 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46811 * 299.99938 * 1 2 3 24 24 H 1.09001 * 109.46768 * 59.99753 * 1 2 3 25 25 H 0.96996 * 119.99935 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47220 * 60.00453 * 13 12 2 27 27 H 1.09002 * 109.46853 * 180.02562 * 13 12 2 28 28 H 1.09004 * 109.47467 * 299.99821 * 13 12 2 29 29 H 1.09002 * 109.46763 * 309.99670 * 14 12 2 30 30 H 1.09001 * 109.47374 * 69.99548 * 14 12 2 31 31 H 1.09002 * 109.46873 * 64.96535 * 17 16 15 32 32 H 1.08996 * 109.47111 * 184.97147 * 17 16 15 33 33 H 1.09006 * 109.46938 * 304.97364 * 17 16 15 34 34 H 1.08999 * 109.46849 * 52.98849 * 18 16 15 35 35 H 1.08993 * 109.46881 * 172.98585 * 18 16 15 36 36 H 1.08996 * 109.47038 * 292.98905 * 18 16 15 37 37 H 1.08996 * 113.62265 * 334.57047 * 19 15 14 38 38 H 1.08999 * 113.61335 * 105.48084 * 19 15 14 39 39 H 1.09001 * 113.54393 * 270.81592 * 20 19 15 40 40 H 1.09004 * 113.74299 * 139.94331 * 20 19 15 41 41 H 1.09003 * 113.61434 * 220.09071 * 21 20 19 42 42 H 1.09005 * 113.69307 * 89.19872 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8260 -0.4203 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3790 -0.5664 3.6185 16 7 3.7878 -0.8709 3.3350 17 6 4.5408 0.3537 3.0332 18 6 4.4021 -1.6055 4.4491 19 6 1.6186 -1.7277 4.2803 20 6 2.0697 -1.1464 5.6327 21 6 2.1688 0.2157 4.9259 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1620 -3.4843 26 1 1.8763 -2.6150 0.3646 27 1 1.9054 -2.5656 2.1438 28 1 0.4385 -2.0743 1.2639 29 1 1.9298 1.0869 2.3125 30 1 0.5722 -0.0346 2.5726 31 1 4.5688 0.9902 3.9176 32 1 5.5578 0.0922 2.7412 33 1 4.0542 0.8874 2.2167 34 1 3.7947 -2.4788 4.6872 35 1 5.4039 -1.9265 4.1641 36 1 4.4632 -0.9563 5.3225 37 1 0.5404 -1.6881 4.1259 38 1 2.0428 -2.7078 4.0622 39 1 3.0304 -1.5323 5.9738 40 1 1.3008 -1.1829 6.4044 41 1 3.0364 0.8023 5.2280 42 1 1.2419 0.7889 4.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097927966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = 36.262737 kcal Electronic energy + Delta-G solvation = -18980.191804 eV Core-core repulsion = 16382.376111 eV Total energy + Delta-G solvation = -2597.815693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56812 -38.36776 -35.01807 -34.63539 -31.14549 -29.63548 -27.89527 -27.17037 -26.85881 -25.98192 -24.44001 -22.55143 -20.80305 -19.61034 -18.19356 -17.24221 -16.99183 -16.25844 -15.89368 -15.45298 -15.32621 -14.84920 -14.53255 -14.36256 -13.93628 -13.63145 -13.26379 -13.19192 -12.98149 -12.90648 -12.66629 -12.52440 -12.46628 -12.37669 -12.16652 -12.02350 -11.96166 -11.87821 -11.39936 -11.12524 -10.93863 -10.70756 -10.45411 -8.88041 -8.61163 -8.06837 -6.16656 1.43509 1.45337 1.52857 2.45717 3.05944 3.22141 3.53375 3.66875 3.80501 3.96194 4.02724 4.43762 4.51878 4.59474 4.65202 4.71176 4.72299 4.74352 4.82786 4.83791 4.86408 4.87052 4.95473 4.97979 5.00192 5.13136 5.20305 5.22037 5.24366 5.27567 5.34293 5.42846 5.59906 5.76303 5.85797 6.25619 6.36414 6.45174 6.61966 6.92304 6.99916 7.52701 8.99332 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036278 B = 0.006577 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.627809 B = 4256.245665 C = 4475.469565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H -0.001 1.001 4 C -0.508 4.508 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.516 5.516 13 C 0.050 3.950 14 C 0.079 3.921 15 C 0.096 3.904 16 N -0.513 5.513 17 C 0.040 3.960 18 C 0.017 3.983 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.165 4.165 22 H 0.030 0.970 23 H 0.021 0.979 24 H 0.058 0.942 25 H 0.260 0.740 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.005 0.995 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -3.833 16.102 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.547 4.547 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.239 5.239 13 C -0.098 4.098 14 C -0.050 4.050 15 C 0.005 3.995 16 N -0.236 5.236 17 C -0.108 4.108 18 C -0.130 4.130 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.205 4.205 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.697 -4.045 15.506 16.445 hybrid contribution -0.877 0.618 -0.591 1.225 sum 2.820 -3.427 14.915 15.561 Atomic orbital electron populations 1.22196 1.00859 0.98942 0.99656 1.19044 0.89561 0.92684 0.87953 0.98349 1.21368 1.30130 1.12227 0.90962 0.92686 1.25686 0.95536 0.95853 1.01787 1.70014 1.38215 1.24327 1.23870 0.85624 0.78685 0.78674 0.78698 1.19736 1.21060 1.19901 1.62110 1.58919 1.02009 1.00832 1.22156 0.95718 0.90649 1.01303 1.21963 0.95787 0.96756 0.90542 1.22217 0.89280 0.96461 0.91517 1.61746 1.00213 1.22364 1.39244 1.22157 0.98201 0.91070 0.99382 1.22796 0.99858 0.98537 0.91840 1.23208 0.99742 0.97942 0.95918 1.23294 1.03168 0.95299 0.96171 1.23505 1.02144 0.97676 0.97172 0.95083 0.95965 0.92276 0.93133 0.93790 0.90548 0.97694 0.93619 0.95681 0.95252 0.91457 0.93352 0.90265 0.91675 0.94433 0.90220 0.90640 0.87752 0.90489 0.91551 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 8.28 71.98 0.60 -7.30 16 2 C 0.22 11.25 2.34 44.17 0.10 11.36 16 3 H 0.00 -0.08 8.03 -2.38 -0.02 -0.10 16 4 C -0.51 -28.81 7.94 25.60 0.20 -28.60 16 5 H 0.05 3.14 6.75 -2.91 -0.02 3.12 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.50 11.32 21.45 0.24 -54.26 16 8 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.52 -22.52 4.34 -901.45 -3.91 -26.43 16 13 C 0.05 2.02 8.44 127.69 1.08 3.10 16 14 C 0.08 2.89 3.27 86.30 0.28 3.17 16 15 C 0.10 2.75 0.40 4.05 0.00 2.75 16 16 N -0.51 -14.95 4.63 -895.70 -4.14 -19.10 16 17 C 0.04 1.17 9.25 127.69 1.18 2.35 16 18 C 0.02 0.37 7.78 127.69 0.99 1.37 16 19 C -0.13 -3.14 5.17 31.18 0.16 -2.98 16 20 C -0.14 -2.73 7.28 31.18 0.23 -2.50 16 21 C -0.17 -3.82 6.70 31.12 0.21 -3.61 16 22 H 0.03 1.51 6.39 -2.39 -0.02 1.49 16 23 H 0.02 0.99 6.75 -2.39 -0.02 0.97 16 24 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.04 1.95 6.53 -2.39 -0.02 1.93 16 27 H 0.08 2.67 5.14 -2.39 -0.01 2.65 16 28 H 0.00 0.19 6.28 -2.39 -0.01 0.18 16 29 H 0.05 1.79 7.41 -2.39 -0.02 1.77 16 30 H 0.03 0.93 6.63 -2.39 -0.02 0.91 16 31 H 0.03 0.74 6.90 -2.39 -0.02 0.73 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.72 6.85 -2.38 -0.02 1.70 16 34 H 0.08 1.59 5.29 -2.39 -0.01 1.58 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 0.72 6.20 -2.39 -0.01 0.70 16 37 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 38 H 0.08 1.81 6.11 -2.39 -0.01 1.80 16 39 H 0.10 1.76 4.67 -2.39 -0.01 1.75 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.49 6.63 -2.39 -0.02 1.48 16 42 H 0.08 1.89 8.10 -2.38 -0.02 1.87 16 Total: -1.00 -61.39 300.65 0.69 -60.70 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.99 Total: 12.07 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.48 Total: -19.94 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -7.81 Total: -99.79 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.39 0.69 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097927966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.967 kcal (2) G-P(sol) polarization free energy of solvation -61.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds