Wall clock time and date at job start Mon Mar 30 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.46903 * 110.99673 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46748 * 274.99491 * 4 3 2 6 6 C 1.53000 * 109.47314 * 300.00275 * 5 4 3 7 7 C 1.52993 * 109.47212 * 299.99883 * 6 5 4 8 8 N 1.46902 * 109.47149 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99945 * 183.95522 * 8 7 6 10 10 C 1.46896 * 110.99920 * 60.00433 * 8 7 6 11 11 C 1.50704 * 109.47047 * 190.00060 * 10 8 7 12 12 H 1.07993 * 119.99658 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99623 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99609 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00421 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47053 * 89.99960 * 15 13 11 17 17 H 1.48504 * 109.47192 * 210.00142 * 15 13 11 18 18 H 1.48496 * 109.47009 * 329.99814 * 15 13 11 19 19 C 1.53003 * 109.46886 * 59.99855 * 7 6 5 20 20 C 1.52996 * 109.47574 * 299.99845 * 19 7 6 21 21 H 1.09001 * 109.47002 * 299.99782 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00219 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00064 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99660 * 2 1 3 26 26 H 1.00894 * 110.99951 * 56.04708 * 3 2 1 27 27 H 1.08995 * 109.47420 * 34.99540 * 4 3 2 28 28 H 1.09005 * 109.46884 * 60.00479 * 5 4 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.46569 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46827 * 60.00375 * 6 5 4 32 32 H 1.09004 * 109.47062 * 300.00515 * 7 6 5 33 33 H 1.09001 * 109.47077 * 59.99541 * 9 8 7 34 34 H 1.08990 * 109.46883 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.46963 * 300.00083 * 9 8 7 36 36 H 1.09002 * 109.47114 * 309.99627 * 10 8 7 37 37 H 1.09002 * 109.47333 * 69.99661 * 10 8 7 38 38 H 0.96998 * 120.00026 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46884 * 179.97438 * 19 7 6 40 40 H 1.09004 * 109.46732 * 60.00458 * 19 7 6 41 41 H 1.09004 * 109.47117 * 300.00327 * 20 19 7 42 42 H 1.08994 * 109.47148 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 4.0019 1.3119 1.4362 6 6 3.4609 2.4794 2.2639 7 6 3.9356 3.7999 1.6543 8 7 3.4156 4.9209 2.4487 9 6 3.7734 6.2088 1.8391 10 6 3.8888 4.8463 3.8373 11 6 3.1492 5.8573 4.6752 12 1 2.4026 6.4920 4.2213 13 6 3.4257 5.9717 6.0210 14 7 2.7806 6.8544 6.7521 15 14 4.7165 4.8733 6.8062 16 1 6.0430 5.5365 6.7308 17 1 4.3633 4.6329 8.2284 18 1 4.7693 3.5771 6.0835 19 6 3.4219 3.9121 0.2175 20 6 3.9629 2.7447 -0.6103 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.6442 1.9012 0.7813 27 1 3.8736 0.5924 -0.5902 28 1 3.6637 0.3711 1.8706 29 1 5.0915 1.3414 1.4359 30 1 3.8272 2.3997 3.2874 31 1 2.3712 2.4503 2.2644 32 1 5.0252 3.8290 1.6539 33 1 3.3511 6.2657 0.8359 34 1 3.3766 7.0214 2.4475 35 1 4.8586 6.2946 1.7819 36 1 3.7065 3.8459 4.2300 37 1 4.9572 5.0599 3.8691 38 1 2.9753 6.9352 7.6989 39 1 3.7597 4.8532 -0.2167 40 1 2.3322 3.8831 0.2179 41 1 5.0526 2.7738 -0.6106 42 1 3.5966 2.8244 -1.6337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157338356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:09 Heat of formation + Delta-G solvation = -6.689413 kcal Electronic energy + Delta-G solvation = -18321.792314 eV Core-core repulsion = 15722.114076 eV Total energy + Delta-G solvation = -2599.678238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50695 -36.59919 -34.05198 -32.38273 -30.77315 -30.06025 -27.97125 -27.20325 -24.68954 -22.53488 -22.13397 -21.54022 -19.88079 -18.77456 -16.94718 -16.15373 -15.31698 -15.05909 -14.51841 -14.47031 -13.95793 -13.69936 -13.38550 -13.26512 -12.82079 -12.47438 -12.32706 -12.17515 -11.99010 -11.73283 -11.45334 -11.29545 -11.13269 -10.97099 -10.75377 -10.73126 -10.55481 -10.27398 -9.99309 -9.74797 -9.58284 -9.20824 -8.55511 -8.32577 -7.31288 -6.03844 -4.00202 3.27696 3.35373 3.36939 4.20404 4.42548 4.65474 4.89619 4.95763 5.02501 5.20271 5.23635 5.31072 5.40759 5.43470 5.50546 5.64359 5.67931 5.72638 5.74145 5.87185 5.96760 6.02413 6.03951 6.11006 6.19388 6.21314 6.33276 6.42222 6.46446 6.57901 6.68680 6.80517 6.91878 7.04008 7.11162 7.46690 7.65027 7.97098 8.12405 8.69632 9.05571 9.58461 11.09483 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.006017 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.520116 B = 4652.654720 C = 4927.967214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.089 3.911 5 C -0.149 4.149 6 C -0.114 4.114 7 C 0.084 3.916 8 N -0.527 5.527 9 C 0.034 3.966 10 C 0.158 3.842 11 C -0.506 4.506 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.111 4.111 20 C -0.103 4.103 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.349 0.651 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.008 0.992 36 H 0.032 0.968 37 H -0.020 1.020 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -12.437 -13.920 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.320 5.320 4 C -0.021 4.021 5 C -0.188 4.188 6 C -0.152 4.152 7 C -0.025 4.025 8 N -0.250 5.250 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.545 4.545 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.149 4.149 20 C -0.142 4.142 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.050 0.950 37 H -0.002 1.002 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.754 -12.325 -14.396 18.966 hybrid contribution 1.862 -0.737 1.613 2.572 sum 2.616 -13.061 -12.783 18.462 Atomic orbital electron populations 1.21770 0.95158 1.01394 1.02576 1.21917 0.95568 0.90180 0.99969 1.60717 1.07442 1.12868 1.50980 1.21521 0.87710 0.98034 0.94837 1.22204 1.01344 0.98523 0.96744 1.21613 1.01217 0.93111 0.99216 1.21579 0.95857 0.91831 0.93237 1.61987 1.59339 1.00713 1.03004 1.22285 0.97062 0.93266 0.98781 1.20257 0.93122 0.98117 0.85349 1.21064 1.21876 1.18723 0.92795 0.90124 1.24895 0.96049 0.95263 0.97153 1.69895 1.42043 1.35151 1.06976 0.86882 0.82366 0.81781 0.78818 1.20405 1.21170 1.19311 1.21594 1.02002 0.97360 0.93949 1.21507 0.99408 0.94030 0.99251 0.92640 0.91900 0.92528 0.95556 0.91542 0.82921 0.91133 0.92385 0.91716 0.91320 0.91314 0.95623 0.92917 0.90322 0.97332 0.94988 1.00233 0.92724 0.92173 0.90575 0.92365 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.17 37.16 0.38 -1.05 16 2 C 0.05 0.54 6.20 -3.82 -0.02 0.52 16 3 N -0.69 -8.15 5.76 -106.72 -0.62 -8.77 16 4 C 0.09 1.04 2.86 -67.71 -0.19 0.84 16 5 C -0.15 -1.88 5.52 -26.73 -0.15 -2.03 16 6 C -0.11 -1.81 4.74 -26.73 -0.13 -1.94 16 7 C 0.08 1.43 1.95 -67.71 -0.13 1.30 16 8 N -0.53 -11.06 4.62 -236.33 -1.09 -12.16 16 9 C 0.03 0.67 8.92 60.07 0.54 1.21 16 10 C 0.16 3.87 3.60 -4.98 -0.02 3.85 16 11 C -0.51 -14.49 9.01 -34.44 -0.31 -14.80 16 12 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 15 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C -0.11 -1.60 4.60 -26.73 -0.12 -1.72 16 20 C -0.10 -1.24 5.64 -26.73 -0.15 -1.39 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.27 7.44 -51.93 -0.39 -0.11 16 25 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 26 H 0.35 4.57 5.57 -39.29 -0.22 4.35 16 27 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 28 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.23 6.20 -51.93 -0.32 0.91 16 31 H 0.07 1.11 6.26 -51.93 -0.32 0.79 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.88 6.23 -51.93 -0.32 0.56 16 34 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.03 0.79 4.88 -51.93 -0.25 0.54 16 37 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.06 0.85 6.34 -51.93 -0.33 0.53 16 40 H 0.08 1.16 7.21 -51.93 -0.37 0.79 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -29.74 309.81 -8.76 -38.50 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.42 Total: 1.04 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.41 Total: -13.33 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.93 Total: -47.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.74 -8.76 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157338356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.811 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds