Wall clock time and date at job start Mon Mar 30 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.46903 * 110.99673 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46748 * 274.99491 * 4 3 2 6 6 C 1.53000 * 109.47314 * 300.00275 * 5 4 3 7 7 C 1.52993 * 109.47212 * 299.99883 * 6 5 4 8 8 N 1.46902 * 109.47149 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99945 * 183.95522 * 8 7 6 10 10 C 1.46896 * 110.99920 * 60.00433 * 8 7 6 11 11 C 1.50704 * 109.47047 * 190.00060 * 10 8 7 12 12 H 1.07993 * 119.99658 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99623 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99609 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00421 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47053 * 89.99960 * 15 13 11 17 17 H 1.48504 * 109.47192 * 210.00142 * 15 13 11 18 18 H 1.48496 * 109.47009 * 329.99814 * 15 13 11 19 19 C 1.53003 * 109.46886 * 59.99855 * 7 6 5 20 20 C 1.52996 * 109.47574 * 299.99845 * 19 7 6 21 21 H 1.09001 * 109.47002 * 299.99782 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00219 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00064 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99660 * 2 1 3 26 26 H 1.00894 * 110.99951 * 56.04708 * 3 2 1 27 27 H 1.08995 * 109.47420 * 34.99540 * 4 3 2 28 28 H 1.09005 * 109.46884 * 60.00479 * 5 4 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.46569 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46827 * 60.00375 * 6 5 4 32 32 H 1.09004 * 109.47062 * 300.00515 * 7 6 5 33 33 H 1.09001 * 109.47077 * 59.99541 * 9 8 7 34 34 H 1.08990 * 109.46883 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.46963 * 300.00083 * 9 8 7 36 36 H 1.09002 * 109.47114 * 309.99627 * 10 8 7 37 37 H 1.09002 * 109.47333 * 69.99661 * 10 8 7 38 38 H 0.96998 * 120.00026 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46884 * 179.97438 * 19 7 6 40 40 H 1.09004 * 109.46732 * 60.00458 * 19 7 6 41 41 H 1.09004 * 109.47117 * 300.00327 * 20 19 7 42 42 H 1.08994 * 109.47148 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 4.0019 1.3119 1.4362 6 6 3.4609 2.4794 2.2639 7 6 3.9356 3.7999 1.6543 8 7 3.4156 4.9209 2.4487 9 6 3.7734 6.2088 1.8391 10 6 3.8888 4.8463 3.8373 11 6 3.1492 5.8573 4.6752 12 1 2.4026 6.4920 4.2213 13 6 3.4257 5.9717 6.0210 14 7 2.7806 6.8544 6.7521 15 14 4.7165 4.8733 6.8062 16 1 6.0430 5.5365 6.7308 17 1 4.3633 4.6329 8.2284 18 1 4.7693 3.5771 6.0835 19 6 3.4219 3.9121 0.2175 20 6 3.9629 2.7447 -0.6103 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.6442 1.9012 0.7813 27 1 3.8736 0.5924 -0.5902 28 1 3.6637 0.3711 1.8706 29 1 5.0915 1.3414 1.4359 30 1 3.8272 2.3997 3.2874 31 1 2.3712 2.4503 2.2644 32 1 5.0252 3.8290 1.6539 33 1 3.3511 6.2657 0.8359 34 1 3.3766 7.0214 2.4475 35 1 4.8586 6.2946 1.7819 36 1 3.7065 3.8459 4.2300 37 1 4.9572 5.0599 3.8691 38 1 2.9753 6.9352 7.6989 39 1 3.7597 4.8532 -0.2167 40 1 2.3322 3.8831 0.2179 41 1 5.0526 2.7738 -0.6106 42 1 3.5966 2.8244 -1.6337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157338356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:09 Heat of formation + Delta-G solvation = -27.075152 kcal Electronic energy + Delta-G solvation = -18322.676306 eV Core-core repulsion = 15722.114076 eV Total energy + Delta-G solvation = -2600.562230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67797 -37.96988 -35.31232 -34.37155 -31.93958 -31.26706 -29.67526 -28.37011 -26.35243 -23.78195 -23.22693 -22.80707 -21.40855 -19.91404 -19.03480 -17.24266 -16.70760 -16.43670 -16.08302 -15.58492 -15.49873 -14.84903 -14.76188 -14.58180 -14.31569 -14.02123 -13.56280 -13.44151 -13.31765 -13.03143 -12.68672 -12.53835 -12.49183 -12.27943 -12.17565 -12.04975 -11.87372 -11.79858 -11.45237 -11.39777 -11.04386 -10.90151 -10.76151 -9.22867 -8.99535 -8.29510 -6.31897 1.30975 1.32490 1.43303 2.32072 3.03019 3.18877 3.35406 3.80988 3.87054 4.05282 4.27234 4.28273 4.39118 4.42410 4.45268 4.56298 4.58929 4.63269 4.65932 4.67905 4.79337 4.88286 4.89720 4.97262 5.06550 5.12626 5.15473 5.16320 5.24641 5.27498 5.34312 5.35593 5.43495 5.53572 5.60173 6.02390 6.25677 6.40898 6.49811 6.69954 6.74791 7.31414 8.87297 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.006017 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.520116 B = 4652.654720 C = 4927.967214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.693 5.693 4 C 0.092 3.908 5 C -0.139 4.139 6 C -0.111 4.111 7 C 0.084 3.916 8 N -0.543 5.543 9 C 0.039 3.961 10 C 0.170 3.830 11 C -0.514 4.514 12 H 0.038 0.962 13 C 0.009 3.991 14 N -0.948 5.948 15 Si 0.944 3.056 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.251 1.251 19 C -0.103 4.103 20 C -0.097 4.097 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.340 0.660 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.035 0.965 37 H -0.023 1.023 38 H 0.267 0.733 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -14.769 -15.379 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.326 5.326 4 C -0.018 4.018 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.024 4.024 8 N -0.267 5.267 9 C -0.109 4.109 10 C 0.043 3.957 11 C -0.553 4.553 12 H 0.056 0.944 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.175 1.175 19 C -0.141 4.141 20 C -0.136 4.136 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.160 0.840 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.053 0.947 37 H -0.005 1.005 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.144 -14.669 -15.889 21.732 hybrid contribution 1.338 0.050 2.007 2.413 sum 3.482 -14.619 -13.882 20.459 Atomic orbital electron populations 1.21753 0.94820 1.02201 1.01871 1.21983 0.95895 0.89335 1.00448 1.60757 1.07628 1.13754 1.50447 1.21552 0.87568 0.98518 0.94182 1.22141 1.01643 0.97165 0.96923 1.21567 1.00811 0.94004 0.98546 1.21715 0.95753 0.90692 0.94283 1.61913 1.60082 1.02569 1.02097 1.22230 0.97453 0.91748 0.99483 1.19988 0.92113 0.96586 0.87056 1.21294 1.21274 1.19076 0.93633 0.94361 1.25815 0.98476 0.96822 0.97739 1.70047 1.44105 1.37196 1.07525 0.85760 0.79295 0.80246 0.77925 1.19394 1.20474 1.17501 1.21519 1.01339 0.98857 0.92376 1.21485 1.00024 0.92906 0.99160 0.93701 0.92216 0.90999 0.95580 0.90399 0.83992 0.89184 0.91555 0.90963 0.93614 0.92093 0.95697 0.89943 0.93582 0.96644 0.94733 1.00516 0.92448 0.91928 0.91606 0.91238 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.17 71.98 0.73 -1.81 16 2 C 0.05 0.94 6.20 86.31 0.54 1.48 16 3 N -0.69 -14.91 5.76 -491.55 -2.83 -17.74 16 4 C 0.09 1.84 2.86 44.92 0.13 1.97 16 5 C -0.14 -3.15 5.52 30.60 0.17 -2.98 16 6 C -0.11 -3.40 4.74 30.59 0.15 -3.26 16 7 C 0.08 2.75 1.95 44.91 0.09 2.83 16 8 N -0.54 -22.82 4.62 -901.60 -4.17 -26.98 16 9 C 0.04 1.53 8.92 127.69 1.14 2.67 16 10 C 0.17 8.34 3.60 85.56 0.31 8.65 16 11 C -0.51 -30.40 9.01 25.60 0.23 -30.17 16 12 H 0.04 2.52 7.37 -2.91 -0.02 2.50 16 13 C 0.01 0.51 5.47 84.65 0.46 0.98 16 14 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 15 Si 0.94 44.83 27.47 68.60 1.88 46.71 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 19 C -0.10 -2.75 4.60 30.59 0.14 -2.61 16 20 C -0.10 -2.02 5.64 30.59 0.17 -1.84 16 21 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.03 0.48 7.44 -2.39 -0.02 0.46 16 25 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 26 H 0.34 8.46 5.57 -89.70 -0.50 7.96 16 27 H 0.09 1.54 7.80 -2.39 -0.02 1.52 16 28 H 0.07 1.41 7.45 -2.38 -0.02 1.39 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.59 6.20 -2.39 -0.01 1.58 16 31 H 0.06 1.95 6.26 -2.38 -0.01 1.93 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 2.69 6.23 -2.39 -0.01 2.68 16 34 H 0.05 2.08 6.76 -2.39 -0.02 2.06 16 35 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.03 1.69 4.88 -2.39 -0.01 1.68 16 37 H -0.02 -1.12 7.55 -2.39 -0.02 -1.14 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.06 1.63 6.34 -2.38 -0.02 1.61 16 40 H 0.07 1.91 7.21 -2.39 -0.02 1.89 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -65.23 309.81 -0.14 -65.38 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.42 Total: 16.50 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.25 Total: -24.09 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -6.70 Total: -104.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -65.23 -0.14 -65.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157338356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.303 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds