Wall clock time and date at job start Mon Mar 30 2020 03:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52993 * 109.47001 * 119.99844 * 2 1 3 5 5 N 1.46902 * 109.46969 * 174.99900 * 4 2 1 6 6 C 1.46904 * 111.00097 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47147 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47034 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00519 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99835 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00227 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47063 * 59.99827 * 13 11 9 15 15 H 1.48504 * 109.47761 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47159 * 299.99800 * 13 11 9 17 17 N 1.46904 * 109.46993 * 239.99806 * 2 1 3 18 18 C 1.47840 * 110.99994 * 301.16451 * 17 2 1 19 19 C 1.54911 * 104.79484 * 146.36332 * 18 17 2 20 20 C 1.55139 * 101.65285 * 322.93039 * 19 18 17 21 21 C 1.47446 * 110.99737 * 62.01209 * 17 2 1 22 22 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 23 23 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 24 24 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 25 25 H 1.09000 * 109.47629 * 294.99850 * 4 2 1 26 26 H 1.09000 * 109.47201 * 55.00130 * 4 2 1 27 27 H 1.00900 * 110.99754 * 56.04713 * 5 4 2 28 28 H 1.08996 * 109.47469 * 300.00528 * 6 5 4 29 29 H 1.09009 * 109.46703 * 60.00494 * 6 5 4 30 30 H 1.08996 * 109.47490 * 300.00666 * 7 6 5 31 31 H 1.09003 * 109.47158 * 60.00921 * 7 6 5 32 32 H 1.08996 * 109.47298 * 300.00638 * 8 7 6 33 33 H 1.09003 * 109.46407 * 60.00315 * 8 7 6 34 34 H 0.97001 * 120.00582 * 180.02562 * 12 11 9 35 35 H 1.08997 * 110.37653 * 27.53734 * 18 17 2 36 36 H 1.08995 * 110.37317 * 265.18936 * 18 17 2 37 37 H 1.08998 * 110.99246 * 204.83539 * 19 18 17 38 38 H 1.09000 * 110.99057 * 81.02089 * 19 18 17 39 39 H 1.09004 * 110.70592 * 154.03354 * 20 19 18 40 40 H 1.09002 * 110.70773 * 277.26937 * 20 19 18 41 41 H 1.08995 * 109.89112 * 117.33654 * 21 17 2 42 42 H 1.08996 * 109.89086 * 356.14091 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0304 -1.5148 2.3767 7 6 5.5545 -1.6057 2.2792 8 6 6.1027 -2.3230 3.5145 9 6 7.6040 -2.4121 3.4187 10 1 8.1160 -1.9981 2.5627 11 6 8.3240 -3.0220 4.4240 12 7 7.7005 -3.5266 5.4663 13 14 10.1849 -3.1318 4.3057 14 1 10.7579 -1.7637 4.2335 15 1 10.7170 -3.8292 5.5040 16 1 10.5595 -3.8904 3.0852 17 7 2.0196 -0.6926 -1.1994 18 6 1.5228 -2.0841 -1.2477 19 6 1.3266 -2.3821 -2.7551 20 6 0.8060 -1.0179 -3.2791 21 6 1.5867 0.0034 -2.4251 22 1 -0.3634 0.4029 -0.9454 23 1 -0.3633 -1.0202 0.1238 24 1 -0.3633 0.6173 0.8216 25 1 1.7516 -0.1583 2.1370 26 1 1.6053 -1.7197 1.2951 27 1 3.9279 0.0826 1.0823 28 1 3.7558 -0.9570 3.2720 29 1 3.6096 -2.5189 2.4308 30 1 5.8287 -2.1637 1.3839 31 1 5.9757 -0.6018 2.2249 32 1 5.8285 -1.7654 4.4100 33 1 5.6815 -3.3269 3.5684 34 1 8.2070 -3.9555 6.1737 35 1 0.5738 -2.1669 -0.7179 36 1 2.2583 -2.7647 -0.8189 37 1 0.5849 -3.1667 -2.9048 38 1 2.2728 -2.6464 -3.2273 39 1 1.0413 -0.8959 -4.3364 40 1 -0.2664 -0.9232 -3.1084 41 1 2.4569 0.3595 -2.9764 42 1 0.9400 0.8419 -2.1667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161174299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:06 Heat of formation + Delta-G solvation = -12.014541 kcal Electronic energy + Delta-G solvation = -17373.843078 eV Core-core repulsion = 14773.933925 eV Total energy + Delta-G solvation = -2599.909153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62288 -36.32475 -34.12268 -32.80328 -30.79194 -29.05290 -28.90346 -26.79055 -24.51169 -22.47462 -21.99987 -21.13812 -20.14602 -19.31396 -16.64548 -16.18053 -15.92906 -15.03259 -14.96586 -14.44481 -14.05584 -14.02639 -13.63825 -13.13756 -12.63911 -12.42934 -12.33315 -12.05483 -11.96193 -11.67106 -11.37995 -11.28911 -11.15733 -11.04867 -10.75947 -10.73629 -10.64643 -10.48271 -10.40708 -9.59185 -9.24648 -8.98902 -8.27780 -8.14640 -7.91066 -5.93335 -3.95063 3.38427 3.42010 3.45265 3.93458 4.43063 4.51960 4.57689 4.63808 4.81036 4.91676 5.01666 5.23775 5.27324 5.39366 5.42260 5.47087 5.50298 5.57306 5.64639 5.72351 5.76515 5.83880 5.88868 5.93808 6.01267 6.08218 6.14988 6.20187 6.44024 6.83876 6.88453 7.05965 7.13646 7.24605 7.53698 7.76080 7.83096 7.93163 8.07934 8.51722 9.12230 9.68507 11.18175 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040271 B = 0.003691 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.129367 B = 7584.482520 C = 7901.082837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 H 0.079 0.921 4 C 0.067 3.933 5 N -0.672 5.672 6 C 0.059 3.941 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.499 5.499 18 C 0.042 3.958 19 C -0.131 4.131 20 C -0.142 4.142 21 C 0.037 3.963 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.337 0.663 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 6.496 -14.339 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.032 4.032 3 H 0.097 0.903 4 C -0.063 4.063 5 N -0.302 5.302 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 N -0.223 5.223 18 C -0.086 4.086 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.091 4.091 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.215 5.834 -14.515 22.531 hybrid contribution -0.049 0.620 0.756 0.979 sum -16.263 6.454 -13.759 22.259 Atomic orbital electron populations 1.22497 0.97747 1.02334 1.02111 1.21887 0.91916 0.98222 0.91184 0.90332 1.21964 0.90181 0.99703 0.94423 1.60414 1.03284 1.25399 1.41133 1.22118 0.97532 0.97999 0.89287 1.21591 0.91267 1.00358 1.01076 1.19065 0.95401 0.95315 0.91785 1.21245 0.92278 1.36770 1.05296 0.92707 1.25032 0.98463 0.95608 0.95457 1.69961 1.35553 1.38888 1.09372 0.86657 0.85789 0.78194 0.77350 1.20279 1.21364 1.20217 1.63727 1.56744 1.01445 1.00356 1.23077 0.98993 0.90790 0.95693 1.22715 1.01409 0.96639 0.96102 1.22780 0.99471 0.95734 1.00044 1.22871 0.98342 0.96338 0.91536 0.92296 0.92098 0.92148 0.95528 0.91430 0.84602 0.96291 0.91857 0.92533 0.93774 0.96930 0.96663 0.93045 0.93618 0.89614 0.91336 0.90632 0.91134 0.91984 0.90715 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 8.55 37.16 0.32 -1.36 16 2 C 0.08 0.84 2.46 -67.72 -0.17 0.67 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.07 0.86 4.87 -3.83 -0.02 0.84 16 5 N -0.67 -10.34 6.23 -113.78 -0.71 -11.05 16 6 C 0.06 1.08 5.68 -3.82 -0.02 1.05 16 7 C -0.10 -2.28 5.41 -26.73 -0.14 -2.42 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 10 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 13 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.50 -5.78 4.92 -223.30 -1.10 -6.88 16 18 C 0.04 0.46 5.28 -2.30 -0.01 0.45 16 19 C -0.13 -1.22 7.08 -24.59 -0.17 -1.39 16 20 C -0.14 -1.18 6.94 -24.91 -0.17 -1.36 16 21 C 0.04 0.36 6.25 -2.83 -0.02 0.34 16 22 H 0.06 0.49 6.29 -51.93 -0.33 0.16 16 23 H 0.06 0.55 6.24 -51.93 -0.32 0.23 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.89 7.33 -51.93 -0.38 0.51 16 27 H 0.34 5.02 8.73 -39.29 -0.34 4.67 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.01 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.05 0.48 5.46 -51.93 -0.28 0.19 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.46 6.18 -51.93 -0.32 0.14 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.51 325.78 -10.00 -40.51 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.86 Total: -1.07 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.96 Total: -16.67 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.07 Total: -44.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.51 -10.00 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161174299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.499 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds