Wall clock time and date at job start Mon Mar 30 2020 03:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52993 * 109.47001 * 119.99844 * 2 1 3 5 5 N 1.46902 * 109.46969 * 174.99900 * 4 2 1 6 6 C 1.46904 * 111.00097 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47147 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47034 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00519 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99835 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00227 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47063 * 59.99827 * 13 11 9 15 15 H 1.48504 * 109.47761 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47159 * 299.99800 * 13 11 9 17 17 N 1.46904 * 109.46993 * 239.99806 * 2 1 3 18 18 C 1.47840 * 110.99994 * 301.16451 * 17 2 1 19 19 C 1.54911 * 104.79484 * 146.36332 * 18 17 2 20 20 C 1.55139 * 101.65285 * 322.93039 * 19 18 17 21 21 C 1.47446 * 110.99737 * 62.01209 * 17 2 1 22 22 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 23 23 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 24 24 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 25 25 H 1.09000 * 109.47629 * 294.99850 * 4 2 1 26 26 H 1.09000 * 109.47201 * 55.00130 * 4 2 1 27 27 H 1.00900 * 110.99754 * 56.04713 * 5 4 2 28 28 H 1.08996 * 109.47469 * 300.00528 * 6 5 4 29 29 H 1.09009 * 109.46703 * 60.00494 * 6 5 4 30 30 H 1.08996 * 109.47490 * 300.00666 * 7 6 5 31 31 H 1.09003 * 109.47158 * 60.00921 * 7 6 5 32 32 H 1.08996 * 109.47298 * 300.00638 * 8 7 6 33 33 H 1.09003 * 109.46407 * 60.00315 * 8 7 6 34 34 H 0.97001 * 120.00582 * 180.02562 * 12 11 9 35 35 H 1.08997 * 110.37653 * 27.53734 * 18 17 2 36 36 H 1.08995 * 110.37317 * 265.18936 * 18 17 2 37 37 H 1.08998 * 110.99246 * 204.83539 * 19 18 17 38 38 H 1.09000 * 110.99057 * 81.02089 * 19 18 17 39 39 H 1.09004 * 110.70592 * 154.03354 * 20 19 18 40 40 H 1.09002 * 110.70773 * 277.26937 * 20 19 18 41 41 H 1.08995 * 109.89112 * 117.33654 * 21 17 2 42 42 H 1.08996 * 109.89086 * 356.14091 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0304 -1.5148 2.3767 7 6 5.5545 -1.6057 2.2792 8 6 6.1027 -2.3230 3.5145 9 6 7.6040 -2.4121 3.4187 10 1 8.1160 -1.9981 2.5627 11 6 8.3240 -3.0220 4.4240 12 7 7.7005 -3.5266 5.4663 13 14 10.1849 -3.1318 4.3057 14 1 10.7579 -1.7637 4.2335 15 1 10.7170 -3.8292 5.5040 16 1 10.5595 -3.8904 3.0852 17 7 2.0196 -0.6926 -1.1994 18 6 1.5228 -2.0841 -1.2477 19 6 1.3266 -2.3821 -2.7551 20 6 0.8060 -1.0179 -3.2791 21 6 1.5867 0.0034 -2.4251 22 1 -0.3634 0.4029 -0.9454 23 1 -0.3633 -1.0202 0.1238 24 1 -0.3633 0.6173 0.8216 25 1 1.7516 -0.1583 2.1370 26 1 1.6053 -1.7197 1.2951 27 1 3.9279 0.0826 1.0823 28 1 3.7558 -0.9570 3.2720 29 1 3.6096 -2.5189 2.4308 30 1 5.8287 -2.1637 1.3839 31 1 5.9757 -0.6018 2.2249 32 1 5.8285 -1.7654 4.4100 33 1 5.6815 -3.3269 3.5684 34 1 8.2070 -3.9555 6.1737 35 1 0.5738 -2.1669 -0.7179 36 1 2.2583 -2.7647 -0.8189 37 1 0.5849 -3.1667 -2.9048 38 1 2.2728 -2.6464 -3.2273 39 1 1.0413 -0.8959 -4.3364 40 1 -0.2664 -0.9232 -3.1084 41 1 2.4569 0.3595 -2.9764 42 1 0.9400 0.8419 -2.1667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161174299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:06 Heat of formation + Delta-G solvation = -32.335149 kcal Electronic energy + Delta-G solvation = -17374.724246 eV Core-core repulsion = 14773.933925 eV Total energy + Delta-G solvation = -2600.790321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45677 -37.66041 -35.71559 -34.38201 -32.50305 -29.91246 -29.67738 -28.45547 -26.00526 -23.79753 -23.28353 -21.92798 -21.83182 -20.27596 -18.46745 -17.53556 -16.77546 -16.56326 -16.26474 -15.90856 -15.40116 -15.04980 -14.66304 -14.35264 -14.22886 -13.72026 -13.45089 -13.20877 -13.11402 -12.98794 -12.70616 -12.66297 -12.45898 -12.26915 -12.07858 -11.96462 -11.88244 -11.64615 -11.50399 -11.39292 -11.34747 -11.03352 -10.54310 -9.19343 -8.96525 -8.19421 -6.30712 1.40256 1.44051 1.51928 2.41924 3.06715 3.13311 3.37792 3.75388 3.87562 4.00873 4.13560 4.20446 4.27016 4.38837 4.43351 4.47577 4.63386 4.67283 4.71755 4.74349 4.76040 4.85945 4.98840 5.00548 5.03995 5.08625 5.12513 5.12869 5.23308 5.26418 5.36269 5.42912 5.52976 5.76451 5.86621 6.11855 6.24172 6.27869 6.38029 6.61271 6.85978 7.38409 8.92449 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040271 B = 0.003691 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.129367 B = 7584.482520 C = 7901.082837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.081 0.919 4 C 0.069 3.931 5 N -0.673 5.673 6 C 0.074 3.926 7 C -0.089 4.089 8 C 0.026 3.974 9 C -0.545 4.545 10 H 0.059 0.941 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.267 1.267 17 N -0.521 5.521 18 C 0.042 3.958 19 C -0.129 4.129 20 C -0.134 4.134 21 C 0.036 3.964 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.049 0.951 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.126 7.385 -15.608 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.099 0.901 4 C -0.061 4.061 5 N -0.304 5.304 6 C -0.055 4.055 7 C -0.127 4.127 8 C -0.012 4.012 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.192 1.192 17 N -0.245 5.245 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.172 4.172 21 C -0.091 4.091 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.562 6.736 -15.803 23.862 hybrid contribution 0.029 0.341 1.163 1.213 sum -16.534 7.077 -14.639 23.190 Atomic orbital electron populations 1.22412 0.95938 1.02488 1.03044 1.21825 0.93251 0.97757 0.89939 0.90079 1.22020 0.88181 0.99893 0.96002 1.60339 1.05118 1.25624 1.39338 1.21804 0.95030 0.98143 0.90548 1.21336 0.93709 0.99603 0.98079 1.18969 0.94852 0.94164 0.93209 1.21682 0.93637 1.37219 1.05728 0.92295 1.26012 1.04152 0.94894 0.94875 1.70096 1.37796 1.39449 1.10164 0.85476 0.78912 0.78760 0.77752 1.19072 1.20679 1.19191 1.63642 1.57758 1.01824 1.01313 1.22998 0.98346 0.90282 0.96923 1.22699 1.01441 0.97837 0.94715 1.22750 0.99839 0.94287 1.00359 1.22886 0.98516 0.96879 0.90866 0.91265 0.92311 0.91281 0.94820 0.92023 0.84097 0.96320 0.92614 0.93216 0.93254 0.99125 0.99180 0.92740 0.92904 0.92434 0.89990 0.91648 0.90029 0.90842 0.91385 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.55 71.98 0.62 -2.18 16 2 C 0.08 1.64 2.46 44.91 0.11 1.75 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.07 1.69 4.87 86.30 0.42 2.11 16 5 N -0.67 -20.41 6.23 -513.89 -3.20 -23.61 16 6 C 0.07 2.71 5.68 86.30 0.49 3.20 16 7 C -0.09 -3.92 5.41 30.59 0.17 -3.76 16 8 C 0.03 1.42 4.97 29.85 0.15 1.57 16 9 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 12 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 13 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 N -0.52 -11.48 4.92 -860.38 -4.23 -15.71 16 18 C 0.04 0.90 5.28 86.78 0.46 1.36 16 19 C -0.13 -2.23 7.08 31.98 0.23 -2.01 16 20 C -0.13 -1.93 6.94 31.78 0.22 -1.71 16 21 C 0.04 0.63 6.25 86.65 0.54 1.17 16 22 H 0.07 0.95 6.29 -2.39 -0.02 0.93 16 23 H 0.06 0.95 6.24 -2.39 -0.01 0.93 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.59 7.33 -2.39 -0.02 1.57 16 27 H 0.34 9.86 8.73 -89.69 -0.78 9.08 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.05 1.05 5.46 -2.39 -0.01 1.03 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 0.96 6.18 -2.39 -0.01 0.94 16 Total: -1.00 -65.40 325.78 -0.85 -66.25 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.18 Total: 13.98 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.09 Total: -30.22 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -7.15 Total: -97.44 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.40 -0.85 -66.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161174299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.914 kcal (2) G-P(sol) polarization free energy of solvation -65.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds