Wall clock time and date at job start Mon Mar 30 2020 03:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46902 * 110.99478 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46983 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47175 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00028 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99872 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46965 * 59.99927 * 13 11 9 15 15 H 1.48498 * 109.47131 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47256 * 300.00083 * 13 11 9 17 17 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 18 18 C 1.48532 * 111.00167 * 177.60186 * 17 2 1 19 19 C 1.54928 * 103.22784 * 159.72352 * 18 17 2 20 20 C 1.54594 * 102.92393 * 322.58593 * 19 18 17 21 21 C 1.47900 * 111.00267 * 295.00250 * 17 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 26 26 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 27 27 H 1.00899 * 110.99764 * 303.94896 * 5 4 2 28 28 H 1.09003 * 109.46837 * 299.99264 * 6 5 4 29 29 H 1.08993 * 109.47729 * 59.99816 * 6 5 4 30 30 H 1.08994 * 109.47494 * 299.99753 * 7 6 5 31 31 H 1.09005 * 109.46904 * 59.99988 * 7 6 5 32 32 H 1.09003 * 109.46960 * 299.99801 * 8 7 6 33 33 H 1.08993 * 109.47363 * 60.00205 * 8 7 6 34 34 H 0.97008 * 119.99843 * 180.02562 * 12 11 9 35 35 H 1.08999 * 110.66679 * 278.16073 * 18 17 2 36 36 H 1.09004 * 110.66209 * 41.28817 * 18 17 2 37 37 H 1.09001 * 110.72421 * 204.23231 * 19 18 17 38 38 H 1.08998 * 110.88112 * 81.01955 * 19 18 17 39 39 H 1.08999 * 110.31256 * 263.04796 * 20 19 18 40 40 H 1.09000 * 110.30998 * 140.87304 * 20 19 18 41 41 H 1.09002 * 109.91231 * 333.50938 * 21 17 2 42 42 H 1.08997 * 109.92026 * 94.79910 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0303 -1.5148 -2.3768 7 6 5.5546 -1.6047 -2.2799 8 6 6.1027 -2.3219 -3.5152 9 6 7.6040 -2.4110 -3.4195 10 1 8.1161 -1.9970 -2.5634 11 6 8.3240 -3.0201 -4.4253 12 7 7.7006 -3.5237 -5.4680 13 14 10.1850 -3.1298 -4.3070 14 1 10.5595 -3.8895 -3.0872 15 1 10.7170 -3.8261 -5.5059 16 1 10.7579 -1.7618 -4.2335 17 7 2.0197 -0.6925 1.1994 18 6 3.5033 -0.7628 1.2051 19 6 3.8407 -1.0123 2.6964 20 6 2.7915 -0.1517 3.4370 21 6 1.6462 0.0441 2.4264 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.6053 -1.7197 -1.2952 26 1 1.7516 -0.1583 -2.1370 27 1 3.9279 0.0826 -1.0824 28 1 3.6095 -2.5189 -2.4309 29 1 3.7558 -0.9570 -3.2721 30 1 5.9751 -0.6006 -2.2260 31 1 5.8294 -2.1623 -1.3846 32 1 5.6822 -3.3262 -3.5687 33 1 5.8279 -1.7647 -4.4108 34 1 8.2071 -3.9525 -6.1755 35 1 3.8516 -1.5910 0.5880 36 1 3.9343 0.1791 0.8655 37 1 4.8504 -0.6715 2.9258 38 1 3.7239 -2.0659 2.9502 39 1 3.2198 0.8115 3.7144 40 1 2.4297 -0.6748 4.3221 41 1 1.5266 1.1039 2.2013 42 1 0.7188 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161174421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:08 Heat of formation + Delta-G solvation = -3.398908 kcal Electronic energy + Delta-G solvation = -17559.246955 eV Core-core repulsion = 14959.711404 eV Total energy + Delta-G solvation = -2599.535551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36898 -36.33934 -34.25322 -32.94358 -30.93069 -29.18918 -28.51934 -26.71115 -24.56563 -22.42932 -21.61890 -20.83798 -20.32485 -19.64482 -16.62374 -16.26018 -15.84533 -15.12961 -14.79385 -14.37704 -14.09696 -13.81236 -13.54756 -12.88218 -12.80693 -12.57840 -12.29453 -12.12605 -11.83394 -11.48758 -11.28199 -11.23284 -11.09399 -10.86081 -10.78567 -10.71062 -10.55396 -10.47276 -10.42987 -9.66251 -9.30264 -9.03508 -8.32305 -8.31311 -7.87932 -5.96946 -3.99052 3.35480 3.39595 3.42297 4.02432 4.37098 4.50875 4.68333 4.75075 4.93026 5.02185 5.16917 5.33753 5.38819 5.42205 5.52795 5.55486 5.64383 5.70071 5.77323 5.82138 5.83165 5.92206 5.94886 6.02401 6.05237 6.19154 6.30888 6.35242 6.66593 6.73815 6.80002 7.09840 7.16175 7.19325 7.34090 7.59815 7.71209 7.86657 8.03554 8.46700 9.08017 9.64785 11.14498 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.004177 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.561715 B = 6701.376648 C = 7394.747330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.035 0.965 4 C 0.062 3.938 5 N -0.682 5.682 6 C 0.054 3.946 7 C -0.106 4.106 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.506 5.506 18 C 0.049 3.951 19 C -0.134 4.134 20 C -0.132 4.132 21 C 0.035 3.965 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.333 0.667 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.126 0.874 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 8.055 13.855 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 H 0.053 0.947 4 C -0.068 4.068 5 N -0.312 5.312 6 C -0.074 4.074 7 C -0.144 4.144 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 N -0.231 5.231 18 C -0.078 4.078 19 C -0.172 4.172 20 C -0.170 4.170 21 C -0.094 4.094 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.524 6.873 14.031 20.664 hybrid contribution 1.201 1.541 -0.737 2.088 sum -12.323 8.414 13.294 19.985 Atomic orbital electron populations 1.21779 0.94269 1.02643 1.01308 1.21826 0.95380 0.95040 0.91212 0.94719 1.22029 0.89219 1.00892 0.94679 1.61370 1.04378 1.24713 1.40785 1.22178 0.97528 0.98360 0.89335 1.21609 0.91182 1.00320 1.01244 1.19061 0.95441 0.95366 0.91702 1.21222 0.92214 1.36984 1.05314 0.92748 1.25025 0.98463 0.95566 0.95433 1.69959 1.35586 1.38772 1.09323 0.86661 0.85769 0.78189 0.77399 1.20204 1.21323 1.20302 1.64791 1.11609 1.46505 1.00195 1.23636 0.86315 1.03021 0.94835 1.22659 0.97975 1.00159 0.96448 1.22396 0.96326 0.99979 0.98308 1.22863 0.98675 0.96191 0.91630 0.91613 0.92762 0.92472 0.90209 0.95072 0.84888 0.91360 0.95912 0.93826 0.92539 0.96567 0.96899 0.93000 0.85657 0.94639 0.91564 0.91154 0.92109 0.91604 0.94555 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 2 C 0.07 0.84 2.22 -67.71 -0.15 0.69 16 3 H 0.03 0.40 7.96 -51.93 -0.41 -0.02 16 4 C 0.06 0.77 5.34 -3.82 -0.02 0.75 16 5 N -0.68 -9.64 2.62 -113.78 -0.30 -9.94 16 6 C 0.05 0.93 5.68 -3.82 -0.02 0.91 16 7 C -0.11 -2.17 5.41 -26.73 -0.14 -2.32 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 13 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 N -0.51 -6.10 5.11 -222.51 -1.14 -7.23 16 18 C 0.05 0.62 4.66 -1.90 -0.01 0.61 16 19 C -0.13 -1.50 7.06 -24.88 -0.18 -1.67 16 20 C -0.13 -1.29 6.93 -25.37 -0.18 -1.47 16 21 C 0.03 0.36 5.55 -2.75 -0.02 0.34 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.48 7.35 -51.93 -0.38 0.09 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.33 4.52 7.59 -39.29 -0.30 4.22 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.86 6.30 -51.93 -0.33 1.53 16 36 H 0.04 0.45 6.90 -51.93 -0.36 0.09 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.36 7.65 -51.93 -0.40 -0.03 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -29.47 325.38 -9.80 -39.27 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.06 Total: -0.91 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.92 Total: -16.40 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.70 Total: -43.73 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.47 -9.80 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161174421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.872 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds