Wall clock time and date at job start Mon Mar 30 2020 03:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46902 * 110.99478 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46983 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47175 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00028 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99872 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46965 * 59.99927 * 13 11 9 15 15 H 1.48498 * 109.47131 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47256 * 300.00083 * 13 11 9 17 17 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 18 18 C 1.48532 * 111.00167 * 177.60186 * 17 2 1 19 19 C 1.54928 * 103.22784 * 159.72352 * 18 17 2 20 20 C 1.54594 * 102.92393 * 322.58593 * 19 18 17 21 21 C 1.47900 * 111.00267 * 295.00250 * 17 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 26 26 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 27 27 H 1.00899 * 110.99764 * 303.94896 * 5 4 2 28 28 H 1.09003 * 109.46837 * 299.99264 * 6 5 4 29 29 H 1.08993 * 109.47729 * 59.99816 * 6 5 4 30 30 H 1.08994 * 109.47494 * 299.99753 * 7 6 5 31 31 H 1.09005 * 109.46904 * 59.99988 * 7 6 5 32 32 H 1.09003 * 109.46960 * 299.99801 * 8 7 6 33 33 H 1.08993 * 109.47363 * 60.00205 * 8 7 6 34 34 H 0.97008 * 119.99843 * 180.02562 * 12 11 9 35 35 H 1.08999 * 110.66679 * 278.16073 * 18 17 2 36 36 H 1.09004 * 110.66209 * 41.28817 * 18 17 2 37 37 H 1.09001 * 110.72421 * 204.23231 * 19 18 17 38 38 H 1.08998 * 110.88112 * 81.01955 * 19 18 17 39 39 H 1.08999 * 110.31256 * 263.04796 * 20 19 18 40 40 H 1.09000 * 110.30998 * 140.87304 * 20 19 18 41 41 H 1.09002 * 109.91231 * 333.50938 * 21 17 2 42 42 H 1.08997 * 109.92026 * 94.79910 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0303 -1.5148 -2.3768 7 6 5.5546 -1.6047 -2.2799 8 6 6.1027 -2.3219 -3.5152 9 6 7.6040 -2.4110 -3.4195 10 1 8.1161 -1.9970 -2.5634 11 6 8.3240 -3.0201 -4.4253 12 7 7.7006 -3.5237 -5.4680 13 14 10.1850 -3.1298 -4.3070 14 1 10.5595 -3.8895 -3.0872 15 1 10.7170 -3.8261 -5.5059 16 1 10.7579 -1.7618 -4.2335 17 7 2.0197 -0.6925 1.1994 18 6 3.5033 -0.7628 1.2051 19 6 3.8407 -1.0123 2.6964 20 6 2.7915 -0.1517 3.4370 21 6 1.6462 0.0441 2.4264 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.6053 -1.7197 -1.2952 26 1 1.7516 -0.1583 -2.1370 27 1 3.9279 0.0826 -1.0824 28 1 3.6095 -2.5189 -2.4309 29 1 3.7558 -0.9570 -3.2721 30 1 5.9751 -0.6006 -2.2260 31 1 5.8294 -2.1623 -1.3846 32 1 5.6822 -3.3262 -3.5687 33 1 5.8279 -1.7647 -4.4108 34 1 8.2071 -3.9525 -6.1755 35 1 3.8516 -1.5910 0.5880 36 1 3.9343 0.1791 0.8655 37 1 4.8504 -0.6715 2.9258 38 1 3.7239 -2.0659 2.9502 39 1 3.2198 0.8115 3.7144 40 1 2.4297 -0.6748 4.3221 41 1 1.5266 1.1039 2.2013 42 1 0.7188 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161174421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:07 Heat of formation + Delta-G solvation = -21.161274 kcal Electronic energy + Delta-G solvation = -17560.017189 eV Core-core repulsion = 14959.711404 eV Total energy + Delta-G solvation = -2600.305785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29950 -37.60711 -35.76835 -34.54148 -32.63707 -30.03402 -29.56887 -28.28770 -25.98892 -23.99215 -22.60465 -22.23338 -21.36327 -20.83032 -18.45609 -17.61662 -16.77835 -16.55408 -16.34708 -15.75830 -15.36721 -14.92694 -14.61924 -14.31051 -13.94908 -13.77135 -13.58976 -13.44552 -13.05878 -13.01195 -12.67228 -12.50022 -12.36229 -12.20245 -12.09173 -11.99845 -11.74067 -11.69275 -11.49014 -11.34452 -11.31789 -11.02449 -10.54241 -9.27279 -9.00120 -8.19333 -6.30480 1.40455 1.43806 1.51690 2.41712 3.11508 3.13817 3.25251 3.80781 3.91310 4.07351 4.16899 4.27344 4.28308 4.37465 4.49946 4.53562 4.63883 4.73352 4.75520 4.80539 4.87915 4.95176 5.00762 5.02810 5.07610 5.12271 5.12764 5.24587 5.26285 5.36805 5.42624 5.52366 5.66543 5.76275 5.86813 6.02891 6.18435 6.27068 6.29175 6.46364 6.86497 7.38806 8.92495 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.004177 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.561715 B = 6701.376648 C = 7394.747330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.078 3.922 3 H 0.037 0.963 4 C 0.063 3.937 5 N -0.676 5.676 6 C 0.069 3.931 7 C -0.089 4.089 8 C 0.025 3.975 9 C -0.543 4.543 10 H 0.060 0.940 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.266 1.266 17 N -0.519 5.519 18 C 0.051 3.949 19 C -0.135 4.135 20 C -0.127 4.127 21 C 0.035 3.965 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.339 0.661 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.054 0.946 32 H -0.010 1.010 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.101 0.899 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 9.146 15.260 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.055 0.945 4 C -0.066 4.066 5 N -0.307 5.307 6 C -0.060 4.060 7 C -0.127 4.127 8 C -0.013 4.013 9 C -0.581 4.581 10 H 0.078 0.922 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.790 3.210 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.191 1.191 17 N -0.245 5.245 18 C -0.077 4.077 19 C -0.173 4.173 20 C -0.166 4.166 21 C -0.093 4.093 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.158 0.842 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.495 7.979 15.456 22.015 hybrid contribution 1.140 1.192 -1.176 2.025 sum -12.355 9.170 14.280 20.992 Atomic orbital electron populations 1.21739 0.92721 1.02601 1.02377 1.21823 0.96512 0.94654 0.90144 0.94471 1.22054 0.87779 1.00771 0.95995 1.61334 1.05599 1.24999 1.38761 1.21854 0.95139 0.98420 0.90550 1.21340 0.93468 0.99646 0.98244 1.18975 0.94851 0.94215 0.93272 1.21677 0.93604 1.37173 1.05670 0.92180 1.25996 1.04028 0.94956 0.94911 1.70096 1.37765 1.39491 1.10155 0.85497 0.79071 0.78726 0.77736 1.19155 1.20824 1.19108 1.64773 1.11082 1.47444 1.01160 1.23466 0.86942 1.01837 0.95449 1.22636 0.98819 1.00156 0.95687 1.22389 0.95595 1.00255 0.98314 1.22903 0.99122 0.96375 0.90921 0.92193 0.91779 0.91343 0.91174 0.94318 0.84215 0.92251 0.96174 0.93212 0.92760 0.99166 0.99245 0.92788 0.88105 0.94850 0.91111 0.91840 0.91132 0.90584 0.93923 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.18 71.98 0.66 -1.63 16 2 C 0.08 1.62 2.22 44.92 0.10 1.72 16 3 H 0.04 0.77 7.96 -2.39 -0.02 0.75 16 4 C 0.06 1.53 5.34 86.30 0.46 1.99 16 5 N -0.68 -18.75 2.62 -513.88 -1.35 -20.10 16 6 C 0.07 2.39 5.68 86.30 0.49 2.88 16 7 C -0.09 -3.70 5.41 30.59 0.17 -3.53 16 8 C 0.02 1.32 4.97 29.85 0.15 1.47 16 9 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 12 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 13 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 N -0.52 -11.76 5.11 -857.88 -4.38 -16.14 16 18 C 0.05 1.24 4.66 86.65 0.40 1.64 16 19 C -0.13 -2.85 7.06 31.80 0.22 -2.62 16 20 C -0.13 -2.21 6.93 31.47 0.22 -1.99 16 21 C 0.03 0.64 5.55 86.45 0.48 1.12 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 0.96 7.35 -2.39 -0.02 0.94 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.34 8.86 7.59 -89.69 -0.68 8.18 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.10 2.98 6.30 -2.39 -0.02 2.96 16 36 H 0.03 0.81 6.90 -2.38 -0.02 0.80 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 0.74 7.65 -2.39 -0.02 0.72 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -63.06 325.38 0.90 -62.17 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.27 Total: 14.68 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 4.05 Total: -29.85 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -5.45 Total: -93.77 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.06 0.90 -62.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161174421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.004 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds