Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47243 * 2 1 4 4 N 1.46907 * 109.47035 * 119.99951 * 2 1 3 5 5 C 1.48536 * 110.99906 * 181.18589 * 4 2 1 6 6 C 1.54942 * 103.22318 * 200.28111 * 5 4 2 7 7 C 1.54595 * 102.92288 * 37.41357 * 6 5 4 8 8 H 1.08999 * 110.39278 * 97.00620 * 7 6 5 9 9 C 1.53000 * 110.30404 * 219.12317 * 7 6 5 10 10 N 1.46893 * 109.47489 * 290.71617 * 9 7 6 11 11 C 1.46898 * 111.00078 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47034 * 35.00337 * 11 10 9 13 13 C 1.53000 * 109.47369 * 275.00371 * 11 10 9 14 14 C 1.50697 * 109.47114 * 155.00243 * 11 10 9 15 15 H 1.07999 * 120.00115 * 0.02562 * 14 11 10 16 16 C 1.37885 * 120.00106 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99578 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99875 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47181 * 59.99951 * 18 16 14 20 20 H 1.48503 * 109.46774 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47112 * 299.99540 * 18 16 14 22 22 C 1.47906 * 110.99836 * 63.78841 * 4 2 1 23 23 H 1.08996 * 109.46928 * 300.00175 * 1 2 3 24 24 H 1.09000 * 109.46884 * 60.00445 * 1 2 3 25 25 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47440 * 239.99925 * 2 1 3 27 27 H 1.09000 * 109.47001 * 185.77735 * 3 2 1 28 28 H 1.08992 * 109.46929 * 305.78094 * 3 2 1 29 29 H 1.09001 * 109.46955 * 65.77915 * 3 2 1 30 30 H 1.08999 * 110.66712 * 318.71267 * 5 4 2 31 31 H 1.08994 * 110.66486 * 81.67560 * 5 4 2 32 32 H 1.08996 * 110.71933 * 279.04987 * 6 5 4 33 33 H 1.09001 * 110.71747 * 155.77375 * 6 5 4 34 34 H 1.09005 * 109.46842 * 170.71497 * 9 7 6 35 35 H 1.09004 * 109.47016 * 50.72567 * 9 7 6 36 36 H 1.00906 * 110.99701 * 56.05062 * 10 9 7 37 37 H 1.09007 * 109.47015 * 299.99977 * 13 11 10 38 38 H 1.08996 * 109.47299 * 180.02562 * 13 11 10 39 39 H 1.08996 * 109.47362 * 59.99846 * 13 11 10 40 40 H 0.97000 * 119.99351 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.91691 * 26.49343 * 22 4 2 42 42 H 1.08992 * 109.91634 * 265.19556 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.5042 -0.6875 1.2483 6 6 3.8310 -1.8534 2.2150 7 6 2.7597 -2.9093 1.8579 8 1 3.1675 -3.6445 1.1641 9 6 2.2524 -3.6005 3.1251 10 7 3.3173 -4.4453 3.6818 11 6 2.8648 -5.1268 4.9020 12 1 1.8090 -5.3806 4.8062 13 6 3.0598 -4.2018 6.1050 14 6 3.6681 -6.3862 5.1012 15 1 4.4380 -6.6534 4.3926 16 6 3.4201 -7.1974 6.1883 17 7 2.4821 -6.8722 7.0509 18 14 4.4154 -8.7588 6.4348 19 1 5.8537 -8.4136 6.5655 20 1 3.9580 -9.4477 7.6684 21 1 4.2258 -9.6562 5.2669 22 6 1.6213 -2.1169 1.1889 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1251 1.4442 -0.1034 28 1 1.5947 1.9853 -0.8336 29 1 1.7637 1.9256 0.9372 30 1 3.9222 -0.8786 0.2599 31 1 3.8729 0.2587 1.6441 32 1 3.7280 -1.5348 3.2522 33 1 4.8323 -2.2410 2.0271 34 1 1.3885 -4.2186 2.8807 35 1 1.9645 -2.8478 3.8590 36 1 4.1522 -3.9064 3.8568 37 1 4.1156 -3.9480 6.2008 38 1 2.7245 -4.7077 7.0104 39 1 2.4788 -3.2909 5.9609 40 1 2.3080 -7.4427 7.8158 41 1 1.4857 -2.4569 0.1623 42 1 0.6971 -2.2481 1.7515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218762955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = -10.094161 kcal Electronic energy + Delta-G solvation = -17737.290592 eV Core-core repulsion = 15137.464713 eV Total energy + Delta-G solvation = -2599.825879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39752 -36.27940 -34.42513 -32.33582 -30.12992 -29.28608 -27.62440 -26.85392 -25.09640 -23.34632 -22.11255 -20.31045 -19.96778 -19.56793 -16.42924 -16.25271 -15.63388 -14.79025 -14.61368 -14.18804 -13.80671 -13.30114 -13.27005 -13.03595 -12.71003 -12.29025 -12.16932 -12.10332 -11.83061 -11.64451 -11.28965 -11.04344 -11.00735 -10.89416 -10.82884 -10.77583 -10.52927 -10.33514 -10.19009 -10.07038 -9.71097 -8.94287 -8.40035 -8.31454 -7.14922 -5.93773 -3.96959 3.37200 3.40846 3.44337 3.93231 4.47115 4.67185 4.75936 4.83903 5.05594 5.06855 5.19624 5.33530 5.37480 5.47759 5.55885 5.57107 5.67274 5.70908 5.77539 5.80580 5.85554 6.00311 6.03679 6.07015 6.15246 6.23299 6.31894 6.49145 6.59762 6.76317 6.90370 6.97116 7.10017 7.16849 7.44750 7.79527 7.93762 8.34015 8.61832 8.69268 9.10110 9.68153 11.13252 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054420 B = 0.004137 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.391983 B = 6766.047012 C = 6851.194118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.144 4.144 4 N -0.513 5.513 5 C 0.037 3.963 6 C -0.118 4.118 7 C -0.095 4.095 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.685 5.685 11 C 0.211 3.789 12 H 0.032 0.968 13 C -0.168 4.168 14 C -0.495 4.495 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.043 3.957 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.324 0.676 37 H 0.026 0.974 38 H 0.088 0.912 39 H 0.005 0.995 40 H 0.259 0.741 41 H 0.041 0.959 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 13.946 -12.653 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 N -0.238 5.238 5 C -0.091 4.091 6 C -0.156 4.156 7 C -0.115 4.115 8 H 0.098 0.902 9 C -0.059 4.059 10 N -0.314 5.314 11 C 0.103 3.897 12 H 0.050 0.950 13 C -0.227 4.227 14 C -0.534 4.534 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.085 4.085 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.140 0.860 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.661 13.607 -12.459 18.524 hybrid contribution 0.773 -0.521 0.150 0.944 sum -0.887 13.086 -12.309 17.988 Atomic orbital electron populations 1.21832 0.94322 1.02110 1.01908 1.21801 0.95931 0.95226 0.91249 1.21849 1.00753 0.95380 1.02219 1.64846 1.09176 1.12778 1.37012 1.23204 0.88175 0.99432 0.98292 1.22556 0.98832 0.94502 0.99753 1.22059 0.94730 0.96467 0.98224 0.90159 1.21918 0.95575 0.94753 0.93605 1.60810 1.05381 1.31280 1.33974 1.19158 0.96270 0.91653 0.82630 0.94996 1.22415 0.98026 0.97177 1.05094 1.21143 1.18789 1.05467 1.07954 0.92071 1.24959 0.95542 0.98111 0.95983 1.69882 1.32004 1.38177 1.13748 0.86573 0.80311 0.83282 0.77256 1.20407 1.21494 1.20325 1.22897 0.99363 0.87131 0.99143 0.91777 0.92550 0.92581 0.94394 0.92845 0.92447 0.91705 0.94174 0.90419 0.90840 0.90951 0.91996 0.95996 0.86001 0.95462 0.89368 0.97594 0.93072 0.94074 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 2 C 0.07 0.69 2.37 -67.71 -0.16 0.53 16 3 C -0.14 -1.28 8.87 37.16 0.33 -0.95 16 4 N -0.51 -6.34 5.11 -222.49 -1.14 -7.48 16 5 C 0.04 0.43 5.40 -1.89 -0.01 0.42 16 6 C -0.12 -1.58 5.89 -24.87 -0.15 -1.73 16 7 C -0.10 -1.40 3.23 -89.26 -0.29 -1.69 16 8 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.07 1.30 4.63 -3.83 -0.02 1.29 16 10 N -0.68 -14.72 6.23 -107.95 -0.67 -15.39 16 11 C 0.21 5.41 2.57 -68.87 -0.18 5.23 16 12 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 13 C -0.17 -4.13 8.94 37.16 0.33 -3.80 16 14 C -0.49 -13.93 8.84 -34.44 -0.30 -14.24 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 17 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 18 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.04 0.56 5.16 -2.75 -0.01 0.55 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 26 H 0.04 0.40 7.98 -51.93 -0.41 -0.01 16 27 H 0.05 0.46 7.22 -51.93 -0.38 0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.45 8.01 -51.93 -0.42 0.03 16 31 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 32 H 0.07 1.07 7.76 -51.93 -0.40 0.66 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 35 H 0.02 0.42 7.29 -51.93 -0.38 0.04 16 36 H 0.32 6.61 7.79 -39.29 -0.31 6.31 16 37 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 39 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.04 0.51 7.64 -51.93 -0.40 0.11 16 42 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -28.63 322.79 -9.45 -38.08 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.90 Total: 2.65 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.21 Total: -13.99 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.18 Total: -48.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.63 -9.45 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218762955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.985 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds