Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47243 * 2 1 4 4 N 1.46907 * 109.47035 * 119.99951 * 2 1 3 5 5 C 1.48536 * 110.99906 * 181.18589 * 4 2 1 6 6 C 1.54942 * 103.22318 * 200.28111 * 5 4 2 7 7 C 1.54595 * 102.92288 * 37.41357 * 6 5 4 8 8 H 1.08999 * 110.39278 * 97.00620 * 7 6 5 9 9 C 1.53000 * 110.30404 * 219.12317 * 7 6 5 10 10 N 1.46893 * 109.47489 * 290.71617 * 9 7 6 11 11 C 1.46898 * 111.00078 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47034 * 35.00337 * 11 10 9 13 13 C 1.53000 * 109.47369 * 275.00371 * 11 10 9 14 14 C 1.50697 * 109.47114 * 155.00243 * 11 10 9 15 15 H 1.07999 * 120.00115 * 0.02562 * 14 11 10 16 16 C 1.37885 * 120.00106 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99578 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99875 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47181 * 59.99951 * 18 16 14 20 20 H 1.48503 * 109.46774 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47112 * 299.99540 * 18 16 14 22 22 C 1.47906 * 110.99836 * 63.78841 * 4 2 1 23 23 H 1.08996 * 109.46928 * 300.00175 * 1 2 3 24 24 H 1.09000 * 109.46884 * 60.00445 * 1 2 3 25 25 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47440 * 239.99925 * 2 1 3 27 27 H 1.09000 * 109.47001 * 185.77735 * 3 2 1 28 28 H 1.08992 * 109.46929 * 305.78094 * 3 2 1 29 29 H 1.09001 * 109.46955 * 65.77915 * 3 2 1 30 30 H 1.08999 * 110.66712 * 318.71267 * 5 4 2 31 31 H 1.08994 * 110.66486 * 81.67560 * 5 4 2 32 32 H 1.08996 * 110.71933 * 279.04987 * 6 5 4 33 33 H 1.09001 * 110.71747 * 155.77375 * 6 5 4 34 34 H 1.09005 * 109.46842 * 170.71497 * 9 7 6 35 35 H 1.09004 * 109.47016 * 50.72567 * 9 7 6 36 36 H 1.00906 * 110.99701 * 56.05062 * 10 9 7 37 37 H 1.09007 * 109.47015 * 299.99977 * 13 11 10 38 38 H 1.08996 * 109.47299 * 180.02562 * 13 11 10 39 39 H 1.08996 * 109.47362 * 59.99846 * 13 11 10 40 40 H 0.97000 * 119.99351 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.91691 * 26.49343 * 22 4 2 42 42 H 1.08992 * 109.91634 * 265.19556 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.5042 -0.6875 1.2483 6 6 3.8310 -1.8534 2.2150 7 6 2.7597 -2.9093 1.8579 8 1 3.1675 -3.6445 1.1641 9 6 2.2524 -3.6005 3.1251 10 7 3.3173 -4.4453 3.6818 11 6 2.8648 -5.1268 4.9020 12 1 1.8090 -5.3806 4.8062 13 6 3.0598 -4.2018 6.1050 14 6 3.6681 -6.3862 5.1012 15 1 4.4380 -6.6534 4.3926 16 6 3.4201 -7.1974 6.1883 17 7 2.4821 -6.8722 7.0509 18 14 4.4154 -8.7588 6.4348 19 1 5.8537 -8.4136 6.5655 20 1 3.9580 -9.4477 7.6684 21 1 4.2258 -9.6562 5.2669 22 6 1.6213 -2.1169 1.1889 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1251 1.4442 -0.1034 28 1 1.5947 1.9853 -0.8336 29 1 1.7637 1.9256 0.9372 30 1 3.9222 -0.8786 0.2599 31 1 3.8729 0.2587 1.6441 32 1 3.7280 -1.5348 3.2522 33 1 4.8323 -2.2410 2.0271 34 1 1.3885 -4.2186 2.8807 35 1 1.9645 -2.8478 3.8590 36 1 4.1522 -3.9064 3.8568 37 1 4.1156 -3.9480 6.2008 38 1 2.7245 -4.7077 7.0104 39 1 2.4788 -3.2909 5.9609 40 1 2.3080 -7.4427 7.8158 41 1 1.4857 -2.4569 0.1623 42 1 0.6971 -2.2481 1.7515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218762955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -28.795911 kcal Electronic energy + Delta-G solvation = -17738.101561 eV Core-core repulsion = 15137.464713 eV Total energy + Delta-G solvation = -2600.636848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43406 -37.90069 -35.74897 -34.14790 -31.60237 -30.25494 -29.10441 -27.76633 -27.23192 -24.80894 -23.10659 -22.05664 -21.15193 -20.69214 -18.38524 -17.27107 -16.91193 -16.72823 -15.83924 -15.31736 -15.18889 -14.95358 -14.53194 -14.11935 -14.00692 -13.55474 -13.46187 -13.28478 -13.09122 -12.91912 -12.85318 -12.69911 -12.57455 -12.18735 -12.13744 -12.02608 -11.85188 -11.76810 -11.69514 -11.48777 -11.43881 -10.98203 -10.47682 -9.33027 -8.95122 -8.08624 -6.20311 1.44008 1.46086 1.53837 2.44989 3.03064 3.19368 3.50624 3.73710 3.78271 4.08454 4.15202 4.20573 4.36162 4.44819 4.53432 4.55863 4.64947 4.69217 4.83006 4.84555 4.88706 4.90812 4.94023 4.96478 5.01069 5.03074 5.08884 5.14287 5.22919 5.27165 5.37249 5.40634 5.45655 5.69373 5.82256 5.99066 6.21451 6.27987 6.66213 6.85165 6.95909 7.49786 8.96904 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054420 B = 0.004137 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.391983 B = 6766.047012 C = 6851.194118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 C -0.140 4.140 4 N -0.525 5.525 5 C 0.043 3.957 6 C -0.117 4.117 7 C -0.088 4.088 8 H 0.077 0.923 9 C 0.078 3.922 10 N -0.685 5.685 11 C 0.214 3.786 12 H -0.002 1.002 13 C -0.154 4.154 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.049 3.951 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.015 0.985 36 H 0.331 0.669 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.051 0.949 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 14.672 -13.878 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.198 4.198 4 N -0.251 5.251 5 C -0.084 4.084 6 C -0.155 4.155 7 C -0.108 4.108 8 H 0.096 0.904 9 C -0.052 4.052 10 N -0.315 5.315 11 C 0.105 3.895 12 H 0.016 0.984 13 C -0.213 4.213 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.149 0.851 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.803 14.353 -13.701 19.859 hybrid contribution 0.463 -0.710 0.510 0.989 sum -0.340 13.643 -13.191 18.980 Atomic orbital electron populations 1.21825 0.93887 1.01816 1.02439 1.21912 0.96346 0.95876 0.90390 1.21818 1.01067 0.94341 1.02526 1.64858 1.09667 1.12067 1.38494 1.23179 0.87836 0.99084 0.98324 1.22525 0.98672 0.94748 0.99523 1.21945 0.95866 0.96719 0.96253 0.90427 1.21903 0.94418 0.93970 0.94934 1.60682 1.06494 1.32370 1.31937 1.18940 0.94011 0.91901 0.84620 0.98376 1.22216 0.98458 0.97296 1.03367 1.21441 1.19095 1.06817 1.08170 0.92620 1.25759 0.96503 1.01204 0.95631 1.70015 1.33106 1.39244 1.14048 0.85542 0.79047 0.79345 0.77238 1.19528 1.21009 1.19877 1.22769 0.98159 0.87716 0.99271 0.92547 0.90719 0.93300 0.94127 0.92471 0.90814 0.92452 0.93085 0.89362 0.92137 0.90216 0.93293 0.96724 0.85137 0.94879 0.92016 0.95958 0.93008 0.93057 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.16 71.98 0.66 -1.80 16 2 C 0.06 1.17 2.37 44.92 0.11 1.28 16 3 C -0.14 -2.14 8.87 71.98 0.64 -1.50 16 4 N -0.53 -12.11 5.11 -857.84 -4.38 -16.49 16 5 C 0.04 0.92 5.40 86.65 0.47 1.38 16 6 C -0.12 -2.95 5.89 31.80 0.19 -2.76 16 7 C -0.09 -2.53 3.23 -9.92 -0.03 -2.56 16 8 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 9 C 0.08 2.84 4.63 86.30 0.40 3.24 16 10 N -0.68 -29.57 6.23 -495.46 -3.09 -32.66 16 11 C 0.21 11.19 2.57 44.17 0.11 11.30 16 12 H 0.00 -0.10 7.80 -2.38 -0.02 -0.12 16 13 C -0.15 -7.65 8.94 71.98 0.64 -7.01 16 14 C -0.52 -29.34 8.84 25.60 0.23 -29.12 16 15 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.01 0.40 5.30 84.66 0.45 0.84 16 17 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 18 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 C 0.05 1.24 5.16 86.44 0.45 1.69 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.90 7.29 -2.38 -0.02 0.89 16 26 H 0.04 0.75 7.98 -2.39 -0.02 0.73 16 27 H 0.06 0.83 7.22 -2.39 -0.02 0.81 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.99 8.01 -2.39 -0.02 0.97 16 31 H 0.09 1.71 7.77 -2.39 -0.02 1.69 16 32 H 0.06 1.69 7.76 -2.39 -0.02 1.68 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.90 8.05 -2.38 -0.02 1.88 16 35 H 0.01 0.56 7.29 -2.39 -0.02 0.54 16 36 H 0.33 13.41 7.79 -89.69 -0.70 12.71 16 37 H 0.03 1.55 8.13 -2.38 -0.02 1.53 16 38 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 39 H 0.02 0.98 7.45 -2.39 -0.02 0.97 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.05 1.19 7.64 -2.39 -0.02 1.17 16 42 H 0.07 1.88 7.68 -2.39 -0.02 1.86 16 Total: -1.00 -60.62 322.79 -0.64 -61.26 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.26 Total: 20.43 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.31 Total: -25.01 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -7.23 Total: -103.23 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.62 -0.64 -61.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218762955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.460 kcal (2) G-P(sol) polarization free energy of solvation -60.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds