Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46760 * 2 1 4 4 N 1.46895 * 109.47400 * 119.99947 * 2 1 3 5 5 C 1.48555 * 111.00408 * 177.92183 * 4 2 1 6 6 C 1.54372 * 104.59654 * 200.96164 * 5 4 2 7 7 C 1.54259 * 105.06390 * 23.85617 * 6 5 4 8 8 H 1.08997 * 110.32656 * 241.00004 * 7 6 5 9 9 C 1.53005 * 110.32544 * 118.89348 * 7 6 5 10 10 N 1.46895 * 109.47226 * 66.45533 * 9 7 6 11 11 C 1.46898 * 111.00045 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46920 * 35.00296 * 11 10 9 13 13 C 1.52999 * 109.47071 * 275.00200 * 11 10 9 14 14 C 1.50699 * 109.46835 * 155.00138 * 11 10 9 15 15 H 1.07996 * 120.00280 * 359.97438 * 14 11 10 16 16 C 1.37887 * 119.99676 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99830 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99947 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47313 * 119.99692 * 18 16 14 21 21 H 1.48500 * 109.47177 * 239.99996 * 18 16 14 22 22 C 1.48569 * 110.99695 * 62.50689 * 4 2 1 23 23 H 1.08997 * 109.47336 * 299.99966 * 1 2 3 24 24 H 1.09002 * 109.47228 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47479 * 240.00437 * 2 1 3 27 27 H 1.08991 * 109.47274 * 305.95349 * 3 2 1 28 28 H 1.09002 * 109.46644 * 65.96014 * 3 2 1 29 29 H 1.09000 * 109.46775 * 185.94857 * 3 2 1 30 30 H 1.09008 * 110.40683 * 82.18621 * 5 4 2 31 31 H 1.09003 * 110.51065 * 319.79810 * 5 4 2 32 32 H 1.08996 * 110.32943 * 264.95542 * 6 5 4 33 33 H 1.09007 * 110.32142 * 142.75063 * 6 5 4 34 34 H 1.08999 * 109.46881 * 306.45292 * 9 7 6 35 35 H 1.09003 * 109.47070 * 186.46243 * 9 7 6 36 36 H 1.00901 * 111.00378 * 303.95625 * 10 9 7 37 37 H 1.09001 * 109.46697 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47081 * 60.00015 * 13 11 10 39 39 H 1.08998 * 109.47327 * 299.99847 * 13 11 10 40 40 H 0.97003 * 119.99828 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.41257 * 40.25836 * 22 4 2 42 42 H 1.08997 * 110.41019 * 277.81925 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.5039 -0.7560 1.2088 6 6 3.8373 -1.9199 2.1666 7 6 2.5806 -2.8144 2.1632 8 1 2.1571 -2.8761 3.1657 9 6 2.9248 -4.2126 1.6459 10 7 3.8245 -4.8788 2.5969 11 6 4.1768 -6.2271 2.1323 12 1 4.2549 -6.2279 1.0451 13 6 3.0926 -7.2156 2.5664 14 6 5.4980 -6.6356 2.7312 15 1 6.0236 -5.9609 3.3906 16 6 6.0362 -7.8703 2.4363 17 7 5.3963 -8.6917 1.6329 18 14 7.6735 -8.3770 3.1792 19 1 8.1852 -7.2825 4.0427 20 1 7.4889 -9.6052 3.9932 21 1 8.6485 -8.6457 2.0918 22 6 1.5935 -2.1157 1.2037 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.5922 1.9862 -0.8318 28 1 1.7663 1.9246 0.9386 29 1 3.1247 1.4445 -0.1065 30 1 3.9219 0.1777 1.5853 31 1 3.8835 -0.9657 0.2088 32 1 4.0297 -1.5411 3.1703 33 1 4.6995 -2.4769 1.7996 34 1 3.4168 -4.1304 0.6767 35 1 2.0104 -4.7964 1.5407 36 1 4.6518 -4.3249 2.7609 37 1 3.3543 -8.2161 2.2220 38 1 2.1370 -6.9201 2.1333 39 1 3.0145 -7.2148 3.6536 40 1 5.7748 -9.5605 1.4258 41 1 1.6723 -2.5392 0.2024 42 1 0.5731 -2.2058 1.5762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218763006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = -11.062753 kcal Electronic energy + Delta-G solvation = -17738.049166 eV Core-core repulsion = 15138.181286 eV Total energy + Delta-G solvation = -2599.867881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38002 -36.24217 -34.41372 -32.37255 -30.09969 -29.24615 -27.67313 -26.93183 -25.23812 -23.44153 -22.16916 -20.17106 -19.75199 -19.30828 -16.61584 -16.41996 -15.48011 -14.87560 -14.74860 -14.27670 -13.83836 -13.37332 -13.18450 -13.00980 -12.56598 -12.34334 -12.23912 -12.18990 -12.03525 -11.46604 -11.21638 -11.07201 -11.03175 -10.87025 -10.84544 -10.66567 -10.46744 -10.24579 -10.14223 -10.06401 -9.78027 -8.79552 -8.48525 -8.46651 -7.23177 -6.02182 -4.08489 3.28735 3.36580 3.40899 3.93144 4.40511 4.68249 4.74733 4.86297 5.10362 5.12768 5.23558 5.28905 5.32959 5.48642 5.52452 5.60070 5.66753 5.71760 5.76832 5.83488 5.87774 5.96998 6.01651 6.07199 6.15229 6.20078 6.27490 6.50861 6.63691 6.90002 6.92097 7.08104 7.16176 7.26104 7.53074 7.79348 7.91893 8.29245 8.41954 8.70308 9.03085 9.57564 11.04232 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045838 B = 0.004336 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.700488 B = 6455.995477 C = 6795.156528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 C -0.143 4.143 4 N -0.507 5.507 5 C 0.034 3.966 6 C -0.119 4.119 7 C -0.088 4.088 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.688 5.688 11 C 0.210 3.790 12 H -0.001 1.001 13 C -0.124 4.124 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.039 3.961 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.329 0.671 37 H 0.080 0.920 38 H 0.003 0.997 39 H 0.031 0.969 40 H 0.260 0.740 41 H 0.043 0.957 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 16.095 -3.350 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.201 4.201 4 N -0.231 5.231 5 C -0.094 4.094 6 C -0.158 4.158 7 C -0.107 4.107 8 H 0.103 0.897 9 C -0.061 4.061 10 N -0.319 5.319 11 C 0.103 3.897 12 H 0.017 0.983 13 C -0.182 4.182 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.090 4.090 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.022 0.978 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.653 15.990 -2.584 17.914 hybrid contribution 1.781 -0.647 -1.183 2.234 sum -5.872 15.343 -3.767 16.855 Atomic orbital electron populations 1.21831 0.94319 1.02088 1.01909 1.21804 0.95904 0.95350 0.91494 1.21829 1.00812 0.95301 1.02146 1.65473 1.07833 1.13167 1.36674 1.23094 0.88496 0.99281 0.98543 1.22357 0.98174 0.95497 0.99730 1.21936 0.94676 0.94229 0.99858 0.89667 1.21937 0.97888 0.92838 0.93474 1.60711 1.20113 1.05195 1.45903 1.19106 0.93759 0.83445 0.93428 0.98345 1.21705 0.95083 1.02385 0.99032 1.21315 1.04031 1.01469 1.28759 0.92187 1.24929 0.97624 0.96437 0.95076 1.69913 1.38317 1.08853 1.35841 0.86472 0.83588 0.78574 0.78954 1.19731 1.20956 1.21129 1.23142 0.99639 0.87571 0.98621 0.91824 0.92510 0.92567 0.94260 0.92445 0.91749 0.92843 0.90499 0.94208 0.91044 0.91166 0.96669 0.91890 0.85286 0.90178 0.97763 0.94967 0.93012 0.93912 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.11 37.16 0.34 -1.01 16 2 C 0.06 0.67 2.44 -67.71 -0.17 0.51 16 3 C -0.14 -1.30 8.96 37.16 0.33 -0.97 16 4 N -0.51 -6.26 5.20 -222.02 -1.15 -7.41 16 5 C 0.03 0.41 5.45 -2.19 -0.01 0.40 16 6 C -0.12 -1.65 6.14 -25.35 -0.16 -1.80 16 7 C -0.09 -1.30 3.31 -89.24 -0.30 -1.60 16 8 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 9 C 0.07 1.26 4.66 -3.82 -0.02 1.24 16 10 N -0.69 -14.84 6.30 -107.96 -0.68 -15.52 16 11 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 12 H 0.00 -0.03 7.80 -51.93 -0.41 -0.44 16 13 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 14 C -0.52 -14.35 8.59 -34.44 -0.30 -14.64 16 15 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.68 11.32 55.43 0.63 -25.06 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.04 0.51 4.99 -2.18 -0.01 0.50 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.54 7.01 -51.93 -0.36 0.18 16 26 H 0.04 0.44 7.98 -51.93 -0.41 0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.48 7.31 -51.93 -0.38 0.10 16 30 H 0.08 0.86 7.82 -51.92 -0.41 0.46 16 31 H 0.04 0.50 7.95 -51.93 -0.41 0.08 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 34 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 35 H 0.06 1.18 7.44 -51.93 -0.39 0.79 16 36 H 0.33 6.93 6.92 -39.29 -0.27 6.65 16 37 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 38 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.04 0.58 7.65 -51.93 -0.40 0.18 16 42 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -28.40 321.43 -9.41 -37.81 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.81 Total: 2.31 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.21 Total: -13.34 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.21 Total: -47.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.40 -9.41 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218763006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.743 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds