Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46760 * 2 1 4 4 N 1.46895 * 109.47400 * 119.99947 * 2 1 3 5 5 C 1.48555 * 111.00408 * 177.92183 * 4 2 1 6 6 C 1.54372 * 104.59654 * 200.96164 * 5 4 2 7 7 C 1.54259 * 105.06390 * 23.85617 * 6 5 4 8 8 H 1.08997 * 110.32656 * 241.00004 * 7 6 5 9 9 C 1.53005 * 110.32544 * 118.89348 * 7 6 5 10 10 N 1.46895 * 109.47226 * 66.45533 * 9 7 6 11 11 C 1.46898 * 111.00045 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46920 * 35.00296 * 11 10 9 13 13 C 1.52999 * 109.47071 * 275.00200 * 11 10 9 14 14 C 1.50699 * 109.46835 * 155.00138 * 11 10 9 15 15 H 1.07996 * 120.00280 * 359.97438 * 14 11 10 16 16 C 1.37887 * 119.99676 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99830 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99947 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47313 * 119.99692 * 18 16 14 21 21 H 1.48500 * 109.47177 * 239.99996 * 18 16 14 22 22 C 1.48569 * 110.99695 * 62.50689 * 4 2 1 23 23 H 1.08997 * 109.47336 * 299.99966 * 1 2 3 24 24 H 1.09002 * 109.47228 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47479 * 240.00437 * 2 1 3 27 27 H 1.08991 * 109.47274 * 305.95349 * 3 2 1 28 28 H 1.09002 * 109.46644 * 65.96014 * 3 2 1 29 29 H 1.09000 * 109.46775 * 185.94857 * 3 2 1 30 30 H 1.09008 * 110.40683 * 82.18621 * 5 4 2 31 31 H 1.09003 * 110.51065 * 319.79810 * 5 4 2 32 32 H 1.08996 * 110.32943 * 264.95542 * 6 5 4 33 33 H 1.09007 * 110.32142 * 142.75063 * 6 5 4 34 34 H 1.08999 * 109.46881 * 306.45292 * 9 7 6 35 35 H 1.09003 * 109.47070 * 186.46243 * 9 7 6 36 36 H 1.00901 * 111.00378 * 303.95625 * 10 9 7 37 37 H 1.09001 * 109.46697 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47081 * 60.00015 * 13 11 10 39 39 H 1.08998 * 109.47327 * 299.99847 * 13 11 10 40 40 H 0.97003 * 119.99828 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.41257 * 40.25836 * 22 4 2 42 42 H 1.08997 * 110.41019 * 277.81925 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.5039 -0.7560 1.2088 6 6 3.8373 -1.9199 2.1666 7 6 2.5806 -2.8144 2.1632 8 1 2.1571 -2.8761 3.1657 9 6 2.9248 -4.2126 1.6459 10 7 3.8245 -4.8788 2.5969 11 6 4.1768 -6.2271 2.1323 12 1 4.2549 -6.2279 1.0451 13 6 3.0926 -7.2156 2.5664 14 6 5.4980 -6.6356 2.7312 15 1 6.0236 -5.9609 3.3906 16 6 6.0362 -7.8703 2.4363 17 7 5.3963 -8.6917 1.6329 18 14 7.6735 -8.3770 3.1792 19 1 8.1852 -7.2825 4.0427 20 1 7.4889 -9.6052 3.9932 21 1 8.6485 -8.6457 2.0918 22 6 1.5935 -2.1157 1.2037 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.5922 1.9862 -0.8318 28 1 1.7663 1.9246 0.9386 29 1 3.1247 1.4445 -0.1065 30 1 3.9219 0.1777 1.5853 31 1 3.8835 -0.9657 0.2088 32 1 4.0297 -1.5411 3.1703 33 1 4.6995 -2.4769 1.7996 34 1 3.4168 -4.1304 0.6767 35 1 2.0104 -4.7964 1.5407 36 1 4.6518 -4.3249 2.7609 37 1 3.3543 -8.2161 2.2220 38 1 2.1370 -6.9201 2.1333 39 1 3.0145 -7.2148 3.6536 40 1 5.7748 -9.5605 1.4258 41 1 1.6723 -2.5392 0.2024 42 1 0.5731 -2.2058 1.5762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218763006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = -29.523480 kcal Electronic energy + Delta-G solvation = -17738.849683 eV Core-core repulsion = 15138.181286 eV Total energy + Delta-G solvation = -2600.668398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44761 -37.85507 -35.78084 -34.15173 -31.60517 -30.25577 -29.20866 -27.84954 -27.30651 -24.93560 -23.18577 -21.75320 -21.05182 -20.55622 -18.58199 -17.42869 -17.05333 -16.54045 -15.84931 -15.56317 -15.31669 -14.96055 -14.58488 -14.03938 -13.89634 -13.79877 -13.44977 -13.19642 -13.05130 -12.93533 -12.87786 -12.70200 -12.45868 -12.23766 -12.17820 -12.06096 -11.92757 -11.68673 -11.67056 -11.49401 -11.34429 -10.87220 -10.59012 -9.46190 -9.06480 -8.14676 -6.29153 1.40857 1.42622 1.54664 2.40755 2.96539 3.13918 3.51136 3.71645 3.86325 4.02355 4.14676 4.17090 4.30129 4.42924 4.51558 4.57022 4.67173 4.72905 4.74900 4.82717 4.85348 4.93457 4.95910 4.99044 5.01664 5.06696 5.09839 5.20683 5.23179 5.28274 5.37681 5.40836 5.49011 5.66527 5.84809 5.89180 6.15200 6.20984 6.46586 6.76968 6.99709 7.41589 8.91392 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045838 B = 0.004336 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.700488 B = 6455.995477 C = 6795.156528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 C -0.139 4.139 4 N -0.510 5.510 5 C 0.038 3.962 6 C -0.118 4.118 7 C -0.080 4.080 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.684 5.684 11 C 0.213 3.787 12 H -0.034 1.034 13 C -0.113 4.113 14 C -0.538 4.538 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.045 3.955 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.006 0.994 35 H 0.057 0.943 36 H 0.333 0.667 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 17.520 -3.028 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 C -0.196 4.196 4 N -0.234 5.234 5 C -0.090 4.090 6 C -0.156 4.156 7 C -0.100 4.100 8 H 0.100 0.900 9 C -0.056 4.056 10 N -0.315 5.315 11 C 0.105 3.895 12 H -0.017 1.017 13 C -0.171 4.171 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.789 3.211 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.084 4.084 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.589 17.438 -2.262 19.152 hybrid contribution 1.716 -1.068 -1.320 2.414 sum -5.873 16.370 -3.582 17.757 Atomic orbital electron populations 1.21814 0.93334 1.01972 1.02708 1.21931 0.96759 0.95977 0.90358 1.21799 1.00842 0.94230 1.02756 1.65515 1.07708 1.12384 1.37830 1.23072 0.88691 0.99209 0.97984 1.22330 0.97023 0.95747 1.00547 1.21813 0.95846 0.92437 0.99873 0.90036 1.21940 0.96591 0.94522 0.92529 1.60635 1.20438 1.03931 1.46527 1.18932 0.93546 0.85711 0.91337 1.01656 1.21536 0.95815 1.01090 0.98666 1.21624 1.05029 1.01901 1.29053 0.92200 1.25762 1.01161 0.96395 0.95379 1.70037 1.39872 1.09184 1.36725 0.85413 0.79185 0.78238 0.78218 1.18955 1.20528 1.20597 1.23053 0.99492 0.88067 0.97761 0.91861 0.90884 0.93151 0.94932 0.90856 0.91888 0.92912 0.89013 0.94492 0.90368 0.92492 0.97585 0.92453 0.84939 0.92473 0.96044 0.95251 0.92822 0.94430 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.11 71.98 0.66 -1.70 16 2 C 0.06 1.13 2.44 44.92 0.11 1.24 16 3 C -0.14 -2.20 8.96 71.99 0.64 -1.55 16 4 N -0.51 -11.72 5.20 -856.33 -4.45 -16.17 16 5 C 0.04 0.88 5.45 86.45 0.47 1.35 16 6 C -0.12 -3.15 6.14 31.49 0.19 -2.96 16 7 C -0.08 -2.33 3.31 -9.90 -0.03 -2.36 16 8 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 9 C 0.07 2.71 4.66 86.31 0.40 3.11 16 10 N -0.68 -29.66 6.30 -495.46 -3.12 -32.78 16 11 C 0.21 11.18 2.60 44.17 0.11 11.30 16 12 H -0.03 -1.98 7.80 -2.39 -0.02 -2.00 16 13 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 14 C -0.54 -30.04 8.59 25.60 0.22 -29.82 16 15 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 16 C 0.01 0.68 5.30 84.66 0.45 1.13 16 17 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 18 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.04 1.12 4.99 86.45 0.43 1.55 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.89 7.01 -2.39 -0.02 0.88 16 26 H 0.03 0.68 7.98 -2.39 -0.02 0.66 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.84 7.31 -2.39 -0.02 0.82 16 30 H 0.09 1.86 7.82 -2.38 -0.02 1.84 16 31 H 0.04 0.88 7.95 -2.39 -0.02 0.86 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.66 6.95 -2.38 -0.02 1.65 16 34 H 0.01 0.23 8.06 -2.39 -0.02 0.21 16 35 H 0.06 2.14 7.44 -2.39 -0.02 2.13 16 36 H 0.33 14.03 6.92 -89.69 -0.62 13.41 16 37 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 38 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.04 0.98 7.65 -2.39 -0.02 0.96 16 42 H 0.09 2.06 7.68 -2.39 -0.02 2.04 16 Total: -1.00 -59.79 321.43 -0.64 -60.44 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.34 Total: 19.93 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.32 Total: -23.83 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -7.33 Total: -102.30 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -59.79 -0.64 -60.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218763006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.915 kcal (2) G-P(sol) polarization free energy of solvation -59.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds