Wall clock time and date at job start Mon Mar 30 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.47112 * 2 1 4 4 C 1.44569 * 111.00347 * 62.30236 * 3 2 1 5 5 C 1.54206 * 108.86531 * 220.35135 * 4 3 2 6 6 H 1.09001 * 108.96027 * 41.86860 * 5 4 3 7 7 C 1.50696 * 108.89197 * 160.58207 * 5 4 3 8 8 H 1.08000 * 120.00480 * 86.01400 * 7 5 4 9 9 C 1.37875 * 119.99944 * 266.01192 * 7 5 4 10 10 N 1.31519 * 119.99825 * 5.08251 * 9 7 5 11 11 Si 1.86806 * 120.00340 * 185.08176 * 9 7 5 12 12 H 1.48496 * 109.46802 * 60.00130 * 11 9 7 13 13 H 1.48497 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46953 * 300.00147 * 11 9 7 15 15 N 1.40017 * 112.07006 * 281.20326 * 5 4 3 16 16 C 1.46898 * 110.99720 * 188.10226 * 15 5 4 17 17 C 1.47903 * 114.07299 * 61.80218 * 15 5 4 18 18 C 1.50798 * 108.49631 * 280.05422 * 17 15 5 19 19 C 1.48071 * 110.99767 * 190.00328 * 3 2 1 20 20 C 1.52991 * 108.88594 * 71.42096 * 19 3 2 21 21 C 1.53001 * 108.80181 * 312.90619 * 19 3 2 22 22 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47027 * 300.00188 * 1 2 3 24 24 H 1.08993 * 109.47113 * 60.00021 * 1 2 3 25 25 H 1.08999 * 109.47027 * 239.99812 * 2 1 3 26 26 H 1.09001 * 109.47252 * 119.99719 * 2 1 3 27 27 H 1.09001 * 109.57330 * 100.53313 * 4 3 2 28 28 H 1.09000 * 109.56943 * 340.16285 * 4 3 2 29 29 H 0.97002 * 119.99946 * 180.02562 * 10 9 7 30 30 H 1.08991 * 109.47675 * 65.49415 * 16 15 5 31 31 H 1.09004 * 109.47081 * 185.49628 * 16 15 5 32 32 H 1.09004 * 109.46674 * 305.49107 * 16 15 5 33 33 H 1.08998 * 109.63474 * 39.75868 * 17 15 5 34 34 H 1.09000 * 109.63039 * 160.35320 * 17 15 5 35 35 H 1.08996 * 108.96224 * 213.23575 * 18 17 15 36 36 H 1.09002 * 108.95799 * 331.89221 * 18 17 15 37 37 H 1.09001 * 109.47381 * 182.94538 * 20 19 3 38 38 H 1.09005 * 109.47334 * 302.94629 * 20 19 3 39 39 H 1.09004 * 109.47438 * 62.94399 * 20 19 3 40 40 H 1.09004 * 109.47293 * 297.10084 * 21 19 3 41 41 H 1.08997 * 109.47581 * 57.10333 * 21 19 3 42 42 H 1.09000 * 109.47091 * 177.11130 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6010 2.0827 1.1950 5 6 1.1886 3.5192 0.8151 6 1 0.6124 3.4894 -0.1097 7 6 0.3241 4.0849 1.9121 8 1 0.7799 4.5634 2.7664 9 6 -1.0487 3.9918 1.8253 10 7 -1.6012 3.3226 0.8371 11 14 -2.1241 4.8160 3.1114 12 1 -1.8630 6.2778 3.1117 13 1 -3.5534 4.5680 2.7942 14 1 -1.8105 4.2568 4.4509 15 7 2.2977 4.3543 0.6333 16 6 1.8813 5.7526 0.4627 17 6 3.1980 3.9318 -0.4614 18 6 4.0786 2.8178 0.0464 19 6 3.4801 1.4315 -0.2401 20 6 3.7537 1.0663 -1.7004 21 6 4.1613 0.4016 0.6633 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4260 2.1157 1.9066 28 1 0.7519 1.5650 1.6414 29 1 -2.5671 3.2574 0.7758 30 1 1.4247 6.1110 1.3852 31 1 2.7518 6.3647 0.2266 32 1 1.1586 5.8198 -0.3505 33 1 2.6069 3.5757 -1.3050 34 1 3.8159 4.7740 -0.7729 35 1 5.0534 2.8892 -0.4358 36 1 4.2085 2.9318 1.1226 37 1 4.8295 1.0464 -1.8746 38 1 3.3328 0.0837 -1.9142 39 1 3.2936 1.8083 -2.3529 40 1 3.9940 0.6668 1.7072 41 1 3.7437 -0.5860 0.4679 42 1 5.2319 0.3905 0.4586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:38 Heat of formation + Delta-G solvation = 17.909363 kcal Electronic energy + Delta-G solvation = -19467.285573 eV Core-core repulsion = 16868.674017 eV Total energy + Delta-G solvation = -2598.611555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34715 -36.15320 -33.82862 -32.17237 -29.71377 -29.17627 -27.16012 -26.92379 -24.61812 -23.80879 -22.16273 -21.08151 -19.13972 -17.77652 -16.42558 -15.73873 -14.95318 -14.52738 -14.19133 -13.82752 -13.49980 -13.35476 -13.22899 -12.78088 -12.16514 -11.96926 -11.93787 -11.40181 -11.25267 -11.19456 -11.13934 -10.96974 -10.82025 -10.73364 -10.66272 -10.43757 -10.29994 -10.02724 -9.72455 -9.64144 -9.51839 -8.88232 -8.41532 -7.21818 -6.79195 -5.93371 -3.98854 3.33833 3.38922 3.41795 4.43658 4.59967 5.12519 5.24692 5.37852 5.49125 5.54998 5.72651 5.86781 5.93326 5.96518 6.04040 6.12188 6.14165 6.21981 6.22423 6.36359 6.38975 6.46655 6.49077 6.59804 6.64935 6.69540 6.71327 6.79246 6.93772 7.00098 7.08706 7.18789 7.36889 7.82430 7.94931 8.07062 8.17564 8.28370 8.62901 8.98228 9.22642 9.67514 11.11651 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.009642 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.014938 B = 2903.216745 C = 3584.737404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.536 5.536 4 C 0.081 3.919 5 C 0.221 3.779 6 H 0.029 0.971 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.066 3.934 10 N -0.881 5.881 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.278 1.278 15 N -0.551 5.551 16 C 0.057 3.943 17 C 0.066 3.934 18 C -0.101 4.101 19 C 0.112 3.888 20 C -0.134 4.134 21 C -0.176 4.176 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.012 0.988 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.466 -4.193 -3.091 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 N -0.261 5.261 4 C -0.047 4.047 5 C 0.112 3.888 6 H 0.047 0.953 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.137 4.137 10 N -0.519 5.519 11 Si 0.715 3.285 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.204 1.204 15 N -0.276 5.276 16 C -0.091 4.091 17 C -0.062 4.062 18 C -0.140 4.140 19 C 0.022 3.978 20 C -0.191 4.191 21 C -0.235 4.235 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.309 -4.063 -3.131 9.765 hybrid contribution -0.790 -0.045 0.686 1.047 sum 7.519 -4.108 -2.445 8.910 Atomic orbital electron populations 1.21803 0.94539 0.99491 1.04393 1.22012 0.96116 0.90032 0.98671 1.61106 1.10068 1.13419 1.41524 1.22251 0.97620 0.96595 0.88188 1.18190 0.85896 0.87395 0.97303 0.95315 1.21092 0.90356 1.37429 1.05933 0.92563 1.24966 0.98110 0.95147 0.95502 1.69989 1.10571 1.40344 1.31000 0.86755 0.79432 0.80187 0.82147 1.20361 1.21503 1.20395 1.59432 1.23187 1.03058 1.41906 1.21990 0.96920 0.89195 1.00967 1.21664 0.95217 0.95752 0.93553 1.21419 0.97330 0.93117 1.02092 1.21325 0.87766 0.94434 0.94247 1.21875 0.99770 1.01290 0.96206 1.22522 1.00341 0.99936 1.00654 0.94241 0.90976 0.91972 0.92380 0.96204 0.96120 0.90947 0.93129 0.91021 0.94886 0.96991 0.94166 0.93119 0.92640 0.91225 0.93286 0.93189 0.92150 0.92796 0.92673 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.82 37.16 0.36 -2.37 16 2 C 0.06 1.05 4.33 -3.82 -0.02 1.04 16 3 N -0.54 -10.52 3.59 -218.81 -0.79 -11.30 16 4 C 0.08 1.85 4.37 -4.44 -0.02 1.83 16 5 C 0.22 5.50 1.65 -71.79 -0.12 5.38 16 6 H 0.03 0.84 7.26 -51.93 -0.38 0.46 16 7 C -0.51 -13.70 6.50 -34.44 -0.22 -13.92 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.15 16 9 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 10 N -0.88 -24.75 12.82 55.43 0.71 -24.04 16 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 N -0.55 -12.27 4.15 -241.17 -1.00 -13.27 16 16 C 0.06 1.22 9.03 60.06 0.54 1.76 16 17 C 0.07 1.26 5.29 -4.38 -0.02 1.23 16 18 C -0.10 -1.72 4.14 -27.47 -0.11 -1.83 16 19 C 0.11 1.85 0.35 -130.60 -0.05 1.81 16 20 C -0.13 -1.95 8.32 37.15 0.31 -1.64 16 21 C -0.18 -2.61 7.54 37.16 0.28 -2.33 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.57 6.17 -51.93 -0.32 1.25 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.06 0.93 6.31 -51.93 -0.33 0.61 16 26 H 0.02 0.34 6.79 -51.93 -0.35 -0.01 16 27 H 0.02 0.47 6.09 -51.93 -0.32 0.16 16 28 H 0.07 1.79 5.44 -51.93 -0.28 1.51 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.60 6.80 -51.93 -0.35 1.25 16 31 H 0.03 0.59 7.72 -51.93 -0.40 0.19 16 32 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 33 H 0.04 0.83 6.76 -51.93 -0.35 0.48 16 34 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 35 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 36 H 0.07 1.29 7.04 -51.93 -0.37 0.92 16 37 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.05 0.70 6.45 -51.93 -0.34 0.37 16 39 H 0.06 0.94 7.34 -51.93 -0.38 0.55 16 40 H 0.05 0.87 7.29 -51.93 -0.38 0.49 16 41 H 0.05 0.79 6.31 -51.93 -0.33 0.46 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -27.44 304.08 -8.00 -35.44 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.32 Total: -0.16 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.84 Total: -7.37 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -1.08 Total: -48.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.44 -8.00 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.346 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds