Wall clock time and date at job start Mon Mar 30 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.47112 * 2 1 4 4 C 1.44569 * 111.00347 * 62.30236 * 3 2 1 5 5 C 1.54206 * 108.86531 * 220.35135 * 4 3 2 6 6 H 1.09001 * 108.96027 * 41.86860 * 5 4 3 7 7 C 1.50696 * 108.89197 * 160.58207 * 5 4 3 8 8 H 1.08000 * 120.00480 * 86.01400 * 7 5 4 9 9 C 1.37875 * 119.99944 * 266.01192 * 7 5 4 10 10 N 1.31519 * 119.99825 * 5.08251 * 9 7 5 11 11 Si 1.86806 * 120.00340 * 185.08176 * 9 7 5 12 12 H 1.48496 * 109.46802 * 60.00130 * 11 9 7 13 13 H 1.48497 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46953 * 300.00147 * 11 9 7 15 15 N 1.40017 * 112.07006 * 281.20326 * 5 4 3 16 16 C 1.46898 * 110.99720 * 188.10226 * 15 5 4 17 17 C 1.47903 * 114.07299 * 61.80218 * 15 5 4 18 18 C 1.50798 * 108.49631 * 280.05422 * 17 15 5 19 19 C 1.48071 * 110.99767 * 190.00328 * 3 2 1 20 20 C 1.52991 * 108.88594 * 71.42096 * 19 3 2 21 21 C 1.53001 * 108.80181 * 312.90619 * 19 3 2 22 22 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47027 * 300.00188 * 1 2 3 24 24 H 1.08993 * 109.47113 * 60.00021 * 1 2 3 25 25 H 1.08999 * 109.47027 * 239.99812 * 2 1 3 26 26 H 1.09001 * 109.47252 * 119.99719 * 2 1 3 27 27 H 1.09001 * 109.57330 * 100.53313 * 4 3 2 28 28 H 1.09000 * 109.56943 * 340.16285 * 4 3 2 29 29 H 0.97002 * 119.99946 * 180.02562 * 10 9 7 30 30 H 1.08991 * 109.47675 * 65.49415 * 16 15 5 31 31 H 1.09004 * 109.47081 * 185.49628 * 16 15 5 32 32 H 1.09004 * 109.46674 * 305.49107 * 16 15 5 33 33 H 1.08998 * 109.63474 * 39.75868 * 17 15 5 34 34 H 1.09000 * 109.63039 * 160.35320 * 17 15 5 35 35 H 1.08996 * 108.96224 * 213.23575 * 18 17 15 36 36 H 1.09002 * 108.95799 * 331.89221 * 18 17 15 37 37 H 1.09001 * 109.47381 * 182.94538 * 20 19 3 38 38 H 1.09005 * 109.47334 * 302.94629 * 20 19 3 39 39 H 1.09004 * 109.47438 * 62.94399 * 20 19 3 40 40 H 1.09004 * 109.47293 * 297.10084 * 21 19 3 41 41 H 1.08997 * 109.47581 * 57.10333 * 21 19 3 42 42 H 1.09000 * 109.47091 * 177.11130 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6010 2.0827 1.1950 5 6 1.1886 3.5192 0.8151 6 1 0.6124 3.4894 -0.1097 7 6 0.3241 4.0849 1.9121 8 1 0.7799 4.5634 2.7664 9 6 -1.0487 3.9918 1.8253 10 7 -1.6012 3.3226 0.8371 11 14 -2.1241 4.8160 3.1114 12 1 -1.8630 6.2778 3.1117 13 1 -3.5534 4.5680 2.7942 14 1 -1.8105 4.2568 4.4509 15 7 2.2977 4.3543 0.6333 16 6 1.8813 5.7526 0.4627 17 6 3.1980 3.9318 -0.4614 18 6 4.0786 2.8178 0.0464 19 6 3.4801 1.4315 -0.2401 20 6 3.7537 1.0663 -1.7004 21 6 4.1613 0.4016 0.6633 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4260 2.1157 1.9066 28 1 0.7519 1.5650 1.6414 29 1 -2.5671 3.2574 0.7758 30 1 1.4247 6.1110 1.3852 31 1 2.7518 6.3647 0.2266 32 1 1.1586 5.8198 -0.3505 33 1 2.6069 3.5757 -1.3050 34 1 3.8159 4.7740 -0.7729 35 1 5.0534 2.8892 -0.4358 36 1 4.2085 2.9318 1.1226 37 1 4.8295 1.0464 -1.8746 38 1 3.3328 0.0837 -1.9142 39 1 3.2936 1.8083 -2.3529 40 1 3.9940 0.6668 1.7072 41 1 3.7437 -0.5860 0.4679 42 1 5.2319 0.3905 0.4586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:37 Heat of formation + Delta-G solvation = 0.259025 kcal Electronic energy + Delta-G solvation = -19468.050949 eV Core-core repulsion = 16868.674017 eV Total energy + Delta-G solvation = -2599.376931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89072 -37.83125 -35.42854 -34.08820 -31.40681 -30.66713 -28.90825 -28.09851 -26.48774 -25.52416 -23.70913 -22.64551 -20.93091 -19.22390 -18.48540 -17.29300 -16.69815 -16.21467 -15.87664 -15.40488 -15.16352 -14.83794 -14.71089 -14.39660 -13.80057 -13.56179 -13.27054 -12.95642 -12.89117 -12.77861 -12.67714 -12.58032 -12.47891 -12.34830 -12.24423 -12.10415 -11.85258 -11.63106 -11.50328 -11.29565 -11.09927 -10.79188 -10.47566 -8.76366 -8.66446 -8.02528 -6.14779 1.41412 1.42025 1.49550 2.44037 3.08401 3.27439 3.60772 3.92686 4.12551 4.21922 4.32346 4.44545 4.60823 4.64082 4.67031 4.72817 4.75990 4.79151 4.84593 4.86313 4.93518 4.96824 5.05802 5.07745 5.13064 5.17659 5.27182 5.29022 5.33884 5.41467 5.48576 5.57734 5.62645 5.71469 5.89960 6.24436 6.57091 6.61428 6.68623 7.09482 7.18357 7.56637 9.00692 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.009642 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.014938 B = 2903.216745 C = 3584.737404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 N -0.553 5.553 4 C 0.103 3.897 5 C 0.235 3.765 6 H -0.019 1.019 7 C -0.521 4.521 8 H 0.047 0.953 9 C 0.020 3.980 10 N -0.907 5.907 11 Si 0.946 3.054 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.274 1.274 15 N -0.560 5.560 16 C 0.062 3.938 17 C 0.068 3.932 18 C -0.098 4.098 19 C 0.103 3.897 20 C -0.127 4.127 21 C -0.168 4.168 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.257 0.743 30 H 0.054 0.946 31 H 0.070 0.930 32 H -0.010 1.010 33 H 0.021 0.979 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -4.834 -3.404 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 N -0.279 5.279 4 C -0.026 4.026 5 C 0.125 3.875 6 H -0.002 1.002 7 C -0.560 4.560 8 H 0.065 0.935 9 C -0.180 4.180 10 N -0.546 5.546 11 Si 0.772 3.228 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.199 1.199 15 N -0.284 5.284 16 C -0.086 4.086 17 C -0.059 4.059 18 C -0.137 4.137 19 C 0.015 3.985 20 C -0.184 4.184 21 C -0.227 4.227 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.403 -4.704 -3.447 11.926 hybrid contribution -1.389 0.169 0.739 1.582 sum 9.015 -4.536 -2.708 10.448 Atomic orbital electron populations 1.21699 0.95846 1.00464 1.01301 1.22025 0.94938 0.89260 1.00169 1.61005 1.12793 1.14445 1.39612 1.21751 0.96210 0.95451 0.89177 1.17914 0.86083 0.89121 0.94344 1.00174 1.21316 0.91130 1.37374 1.06177 0.93502 1.25632 0.99285 0.95711 0.97334 1.70126 1.10516 1.41421 1.32548 0.85815 0.77738 0.79334 0.79931 1.19834 1.21249 1.19898 1.59445 1.22292 1.03071 1.43616 1.21956 0.97912 0.89465 0.99271 1.21757 0.94743 0.97532 0.91897 1.21428 0.98483 0.92470 1.01274 1.21530 0.85713 0.95035 0.96252 1.21824 1.01670 1.01023 0.93920 1.22430 1.01865 0.99407 0.98961 0.91206 0.94645 0.94314 0.89833 0.95336 0.96708 0.93811 0.93378 0.92764 0.91150 0.99104 0.96069 0.90627 0.89015 0.92823 0.90281 0.92583 0.93605 0.94586 0.91921 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.82 71.98 0.71 -4.49 16 2 C 0.06 2.18 4.33 86.30 0.37 2.55 16 3 N -0.55 -21.59 3.59 -846.17 -3.04 -24.63 16 4 C 0.10 4.81 4.37 87.15 0.38 5.19 16 5 C 0.23 12.12 1.65 45.82 0.08 12.19 16 6 H -0.02 -1.18 7.26 -2.39 -0.02 -1.20 16 7 C -0.52 -29.03 6.50 25.60 0.17 -28.86 16 8 H 0.05 2.65 7.60 -2.91 -0.02 2.62 16 9 C 0.02 1.15 5.45 84.65 0.46 1.61 16 10 N -0.91 -53.11 12.82 21.45 0.27 -52.83 16 11 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 15 N -0.56 -25.11 4.15 -916.91 -3.81 -28.91 16 16 C 0.06 2.65 9.03 127.69 1.15 3.80 16 17 C 0.07 2.50 5.29 85.39 0.45 2.95 16 18 C -0.10 -3.10 4.14 30.11 0.12 -2.97 16 19 C 0.10 3.19 0.35 3.53 0.00 3.19 16 20 C -0.13 -3.26 8.32 71.98 0.60 -2.66 16 21 C -0.17 -4.48 7.54 71.98 0.54 -3.94 16 22 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.03 1.60 6.17 -2.39 -0.01 1.59 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 2.47 6.31 -2.39 -0.02 2.45 16 26 H 0.03 0.94 6.79 -2.39 -0.02 0.93 16 27 H 0.01 0.69 6.09 -2.39 -0.01 0.68 16 28 H 0.04 2.27 5.44 -2.39 -0.01 2.26 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.05 2.47 6.80 -2.39 -0.02 2.45 16 31 H 0.07 2.44 7.72 -2.39 -0.02 2.42 16 32 H -0.01 -0.45 8.11 -2.39 -0.02 -0.47 16 33 H 0.02 0.87 6.76 -2.39 -0.02 0.85 16 34 H 0.08 2.39 7.60 -2.39 -0.02 2.37 16 35 H 0.09 2.24 7.95 -2.39 -0.02 2.22 16 36 H 0.05 1.88 7.04 -2.39 -0.02 1.86 16 37 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.06 1.37 6.45 -2.38 -0.02 1.35 16 39 H 0.04 1.31 7.34 -2.38 -0.02 1.30 16 40 H 0.03 1.08 7.29 -2.39 -0.02 1.06 16 41 H 0.06 1.57 6.31 -2.39 -0.02 1.56 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.07 304.08 1.47 -60.60 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.97 Total: 10.79 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.04 Total: -11.43 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -6.57 Total: -106.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.07 1.47 -60.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.863 kcal (2) G-P(sol) polarization free energy of solvation -62.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds