Wall clock time and date at job start Mon Mar 30 2020 03:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47139 * 2 1 4 4 C 1.47739 * 111.00326 * 169.11005 * 3 2 1 5 5 H 1.09006 * 108.99345 * 205.57009 * 4 3 2 6 6 C 1.50695 * 108.99281 * 324.39881 * 4 3 2 7 7 H 1.08001 * 120.00371 * 352.63345 * 6 4 3 8 8 C 1.37881 * 119.99849 * 172.63283 * 6 4 3 9 9 N 1.31516 * 120.00080 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 119.99857 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47270 * 90.00139 * 10 8 6 12 12 H 1.48504 * 109.47268 * 210.00203 * 10 8 6 13 13 H 1.48504 * 109.47318 * 329.99820 * 10 8 6 14 14 C 1.50781 * 111.91148 * 84.94675 * 4 3 2 15 15 N 1.47688 * 108.09783 * 94.61093 * 14 4 3 16 16 C 1.46900 * 110.99995 * 151.98679 * 15 14 4 17 17 C 1.40078 * 114.56869 * 278.68539 * 15 14 4 18 18 C 1.54509 * 111.51031 * 61.45123 * 17 15 14 19 19 C 1.48068 * 111.00051 * 296.71548 * 3 2 1 20 20 C 1.53003 * 108.79038 * 71.32253 * 19 3 2 21 21 C 1.52998 * 108.79150 * 313.10770 * 19 3 2 22 22 H 1.08997 * 109.47450 * 324.18438 * 1 2 3 23 23 H 1.09000 * 109.47057 * 84.19247 * 1 2 3 24 24 H 1.09001 * 109.46767 * 204.18939 * 1 2 3 25 25 H 1.09002 * 109.47741 * 240.00438 * 2 1 3 26 26 H 1.09001 * 109.47605 * 119.99809 * 2 1 3 27 27 H 0.97003 * 119.99685 * 179.97438 * 9 8 6 28 28 H 1.09002 * 109.73953 * 334.95773 * 14 4 3 29 29 H 1.09010 * 109.73374 * 214.25901 * 14 4 3 30 30 H 1.08996 * 109.47195 * 184.68791 * 16 15 14 31 31 H 1.08998 * 109.47334 * 304.68701 * 16 15 14 32 32 H 1.09001 * 109.46931 * 64.68415 * 16 15 14 33 33 H 1.08996 * 109.07016 * 181.97307 * 17 15 14 34 34 H 1.09003 * 109.07256 * 300.99266 * 17 15 14 35 35 H 1.09001 * 109.56160 * 43.82837 * 18 17 15 36 36 H 1.09003 * 109.55662 * 164.03782 * 18 17 15 37 37 H 1.08998 * 109.47135 * 154.59995 * 20 19 3 38 38 H 1.09001 * 109.47265 * 274.59547 * 20 19 3 39 39 H 1.08995 * 109.47165 * 34.59396 * 20 19 3 40 40 H 1.08997 * 109.47011 * 281.91849 * 21 19 3 41 41 H 1.09008 * 109.46977 * 41.90904 * 21 19 3 42 42 H 1.08997 * 109.47535 * 161.91351 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4731 1.4328 0.2606 5 1 3.7237 2.3997 0.6970 6 6 3.8318 0.3452 1.2401 7 1 3.0524 -0.2309 1.7166 8 6 5.1550 0.0856 1.5279 9 7 6.1041 0.7868 0.9472 10 14 5.5996 -1.2630 2.7415 11 1 5.7633 -2.5480 2.0156 12 1 6.8715 -0.9148 3.4245 13 1 4.5175 -1.3983 3.7496 14 6 4.2774 1.2403 -1.0002 15 7 4.6108 2.5741 -1.5398 16 6 5.8630 2.5337 -2.3067 17 6 3.5862 3.1745 -2.2828 18 6 2.3240 3.4070 -1.4224 19 6 1.6106 2.0925 -1.2348 20 6 0.1041 2.3531 -1.1774 21 6 1.9067 1.1950 -2.4380 22 1 -0.3634 0.8333 0.6013 23 1 -0.3633 0.1040 -1.0224 24 1 -0.3633 -0.9375 0.4211 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 7.0350 0.6043 1.1500 28 1 3.6897 0.6841 -1.7305 29 1 5.1939 0.6957 -0.7726 30 1 6.1286 3.5427 -2.6222 31 1 6.6586 2.1272 -1.6823 32 1 5.7312 1.9014 -3.1847 33 1 3.9381 4.1326 -2.6652 34 1 3.3297 2.5286 -3.1225 35 1 2.6134 3.8071 -0.4507 36 1 1.6642 4.1135 -1.9261 37 1 -0.1390 3.2169 -1.7961 38 1 -0.4304 1.4786 -1.5483 39 1 -0.1916 2.5496 -0.1468 40 1 2.9715 1.2345 -2.6675 41 1 1.6233 0.1687 -2.2042 42 1 1.3362 1.5422 -3.2994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:20 Heat of formation + Delta-G solvation = 84.816427 kcal Electronic energy + Delta-G solvation = -19859.474087 eV Core-core repulsion = 17263.763840 eV Total energy + Delta-G solvation = -2595.710247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13860 -35.98843 -34.10483 -31.91427 -30.41014 -28.32707 -27.42931 -26.72458 -25.29105 -23.80116 -21.61972 -21.37627 -19.36263 -17.42327 -16.49847 -15.85786 -15.13114 -14.50226 -14.38818 -14.04382 -13.89412 -13.36646 -12.94042 -12.42325 -12.28698 -12.21041 -11.78936 -11.62222 -11.30837 -11.00897 -10.93192 -10.84744 -10.72622 -10.60695 -10.55516 -10.13111 -10.08436 -9.95949 -9.78381 -9.38099 -9.29904 -8.63873 -8.23076 -7.12959 -6.79653 -5.91740 -4.04569 3.29881 3.37771 3.40917 4.41131 4.88505 5.05887 5.32471 5.39312 5.44937 5.67985 5.85989 5.93336 5.97721 6.01071 6.06905 6.11956 6.15807 6.19171 6.23571 6.27989 6.38043 6.46631 6.47654 6.59744 6.68986 6.72105 6.83790 6.87597 6.91761 7.03318 7.08849 7.27129 7.53175 7.79294 7.89747 8.16957 8.23334 8.46858 8.62295 8.80861 9.07159 9.59870 11.04542 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.011724 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.926642 B = 2387.629915 C = 3366.442894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.220 3.780 5 H 0.049 0.951 6 C -0.515 4.515 7 H 0.069 0.931 8 C 0.059 3.941 9 N -0.876 5.876 10 Si 0.891 3.109 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.020 3.980 15 N -0.547 5.547 16 C 0.043 3.957 17 C 0.063 3.937 18 C -0.106 4.106 19 C 0.115 3.885 20 C -0.147 4.147 21 C -0.214 4.214 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.026 0.974 26 H 0.096 0.904 27 H 0.258 0.742 28 H 0.026 0.974 29 H 0.124 0.876 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.002 0.998 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 1.553 -6.290 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.083 4.083 3 N -0.257 5.257 4 C 0.114 3.886 5 H 0.066 0.934 6 C -0.553 4.553 7 H 0.087 0.913 8 C -0.142 4.142 9 N -0.516 5.516 10 Si 0.719 3.281 11 H -0.210 1.210 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.106 4.106 15 N -0.271 5.271 16 C -0.105 4.105 17 C -0.067 4.067 18 C -0.144 4.144 19 C 0.025 3.975 20 C -0.204 4.204 21 C -0.271 4.271 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.141 0.859 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.208 2.106 -5.528 8.576 hybrid contribution 0.620 -1.550 -0.811 1.856 sum -5.588 0.556 -6.339 8.469 Atomic orbital electron populations 1.22374 0.97734 1.00739 1.00608 1.22248 0.92825 0.91295 1.01913 1.62460 1.17647 1.13679 1.31919 1.19066 0.79507 0.98082 0.91957 0.93368 1.21540 0.91860 1.17991 1.23954 0.91289 1.24956 0.96585 0.96411 0.96290 1.69915 0.99729 1.39815 1.42118 0.86618 0.77952 0.82012 0.81541 1.20972 1.21312 1.19921 1.23307 1.04717 0.86705 0.95912 1.58932 1.02898 1.26643 1.38639 1.22181 0.93806 0.99051 0.95450 1.21212 0.92669 0.97832 0.94958 1.21587 0.95411 0.96114 1.01297 1.20545 0.94274 0.93690 0.88974 1.22525 0.95790 1.00266 1.01827 1.23589 1.03491 1.01251 0.98772 0.91773 0.93311 0.94205 0.95565 0.88604 0.93176 0.95623 0.85863 0.93586 0.90687 0.97948 0.93199 0.96112 0.90144 0.92204 0.94074 0.92269 0.91719 0.89274 0.91951 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.29 37.16 0.31 -2.24 16 2 C 0.04 0.89 4.61 -3.82 -0.02 0.87 16 3 N -0.53 -11.28 4.40 -213.55 -0.94 -12.22 16 4 C 0.22 5.41 1.99 -69.52 -0.14 5.27 16 5 H 0.05 1.37 7.20 -51.93 -0.37 0.99 16 6 C -0.51 -13.53 7.81 -34.44 -0.27 -13.80 16 7 H 0.07 1.80 5.30 -52.49 -0.28 1.53 16 8 C 0.06 1.56 5.07 -17.82 -0.09 1.47 16 9 N -0.88 -23.80 10.80 55.43 0.60 -23.20 16 10 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.02 0.47 4.31 -4.50 -0.02 0.45 16 15 N -0.55 -11.65 4.23 -248.02 -1.05 -12.70 16 16 C 0.04 0.83 9.46 60.06 0.57 1.40 16 17 C 0.06 1.16 4.85 -6.56 -0.03 1.13 16 18 C -0.11 -1.92 5.05 -27.07 -0.14 -2.05 16 19 C 0.11 2.09 0.67 -132.09 -0.09 2.01 16 20 C -0.15 -2.29 7.23 37.16 0.27 -2.02 16 21 C -0.21 -3.78 5.88 37.16 0.22 -3.56 16 22 H 0.06 1.05 6.45 -51.93 -0.33 0.72 16 23 H 0.05 0.73 5.34 -51.93 -0.28 0.45 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.54 5.36 -51.93 -0.28 0.26 16 26 H 0.10 2.09 4.99 -51.93 -0.26 1.83 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.03 0.60 3.68 -51.93 -0.19 0.41 16 29 H 0.12 3.26 4.59 -51.92 -0.24 3.02 16 30 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 31 H 0.07 1.56 7.95 -51.93 -0.41 1.15 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.05 0.85 7.91 -51.93 -0.41 0.44 16 34 H 0.02 0.39 5.08 -51.93 -0.26 0.12 16 35 H 0.08 1.65 7.19 -51.93 -0.37 1.28 16 36 H 0.06 0.93 7.23 -51.93 -0.38 0.55 16 37 H 0.04 0.57 7.29 -51.93 -0.38 0.19 16 38 H 0.06 0.87 4.86 -51.93 -0.25 0.62 16 39 H 0.06 1.05 6.86 -51.93 -0.36 0.69 16 40 H 0.09 1.73 2.67 -51.93 -0.14 1.59 16 41 H 0.06 1.13 4.86 -51.92 -0.25 0.87 16 42 H 0.04 0.63 8.01 -51.93 -0.42 0.21 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -26.38 280.91 -7.86 -34.25 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.26 Total: 5.02 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.57 Total: -11.10 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -1.39 Total: -48.12 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.38 -7.86 -34.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.064 kcal (2) G-P(sol) polarization free energy of solvation -26.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds