Wall clock time and date at job start Mon Mar 30 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47039 * 2 1 4 4 C 1.47690 * 111.00060 * 293.95438 * 3 2 1 5 5 C 1.50779 * 108.09865 * 152.01078 * 4 3 2 6 6 H 1.08994 * 108.99116 * 333.97270 * 5 4 3 7 7 C 1.50704 * 108.98800 * 215.23379 * 5 4 3 8 8 H 1.07998 * 120.00319 * 245.43497 * 7 5 4 9 9 C 1.37884 * 119.99897 * 65.42934 * 7 5 4 10 10 N 1.31511 * 119.99967 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99773 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47080 * 90.00172 * 11 9 7 13 13 H 1.48503 * 109.47065 * 209.99918 * 11 9 7 14 14 H 1.48499 * 109.47098 * 330.00161 * 11 9 7 15 15 N 1.47741 * 111.92008 * 94.60704 * 5 4 3 16 16 C 1.46904 * 110.99832 * 84.93637 * 15 5 4 17 17 C 1.48065 * 113.78694 * 318.87239 * 15 5 4 18 18 C 1.50745 * 112.93491 * 318.28252 * 17 15 5 19 19 C 1.53000 * 109.55837 * 332.82341 * 18 17 15 20 20 C 1.53001 * 109.65174 * 212.54746 * 18 17 15 21 21 C 1.40083 * 110.99845 * 165.31838 * 3 2 1 22 22 H 1.09000 * 109.46950 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46959 * 299.99731 * 1 2 3 24 24 H 1.08993 * 109.47136 * 59.99945 * 1 2 3 25 25 H 1.08997 * 109.47254 * 239.99944 * 2 1 3 26 26 H 1.09004 * 109.46652 * 120.00025 * 2 1 3 27 27 H 1.09005 * 109.73378 * 271.65782 * 4 3 2 28 28 H 1.08991 * 109.73702 * 32.35139 * 4 3 2 29 29 H 0.97000 * 119.99726 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47208 * 307.24338 * 16 15 5 31 31 H 1.08999 * 109.47278 * 67.24659 * 16 15 5 32 32 H 1.09003 * 109.47089 * 187.24571 * 16 15 5 33 33 H 1.09000 * 108.78677 * 197.39404 * 17 15 5 34 34 H 1.08992 * 108.79550 * 79.18066 * 17 15 5 35 35 H 1.09003 * 109.46736 * 218.59724 * 19 18 17 36 36 H 1.09001 * 109.47221 * 338.59716 * 19 18 17 37 37 H 1.08993 * 109.47376 * 98.59751 * 19 18 17 38 38 H 1.08998 * 109.47245 * 300.49334 * 20 18 17 39 39 H 1.09008 * 109.46539 * 60.48698 * 20 18 17 40 40 H 1.08995 * 109.47550 * 180.48707 * 20 18 17 41 41 H 1.09005 * 109.07300 * 308.66954 * 21 3 2 42 42 H 1.09004 * 109.07501 * 67.68530 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6683 2.0706 -1.2600 5 6 1.5448 3.5454 -0.9721 6 1 1.2835 3.6813 0.0773 7 6 0.4460 4.1217 -1.8275 8 1 0.6812 4.8463 -2.5929 9 6 -0.8598 3.7237 -1.6329 10 7 -1.1462 2.8408 -0.7012 11 14 -2.2217 4.4374 -2.6937 12 1 -2.4048 3.5909 -3.8999 13 1 -3.4870 4.4728 -1.9171 14 1 -1.8560 5.8160 -3.1072 15 7 2.8019 4.2693 -1.2523 16 6 2.8910 4.6398 -2.6710 17 6 4.0177 3.5458 -0.8154 18 6 3.8591 2.8915 0.5333 19 6 2.8256 3.6615 1.3578 20 6 5.2021 2.8913 1.2663 21 6 3.3798 1.4365 0.3315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.4511 1.9043 -2.0002 28 1 0.7192 1.6879 -1.6350 29 1 -2.0648 2.5611 -0.5641 30 1 2.7334 3.7554 -3.2881 31 1 2.1283 5.3838 -2.9008 32 1 3.8775 5.0553 -2.8768 33 1 4.8477 4.2508 -0.7682 34 1 4.2535 2.7783 -1.5525 35 1 3.1488 3.7033 2.3980 36 1 2.7296 4.6742 0.9661 37 1 1.8621 3.1556 1.2969 38 1 5.9382 2.3458 0.6758 39 1 5.5388 3.9184 1.4078 40 1 5.0861 2.4100 2.2372 41 1 3.5435 0.8767 1.2523 42 1 3.9595 0.9797 -0.4706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:39 Heat of formation + Delta-G solvation = 41.877943 kcal Electronic energy + Delta-G solvation = -19711.390385 eV Core-core repulsion = 17113.818185 eV Total energy + Delta-G solvation = -2597.572200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68673 -35.52800 -34.62642 -32.21534 -29.96931 -28.44087 -26.88459 -26.38796 -24.92174 -23.48402 -23.31480 -20.55057 -18.96554 -17.99644 -16.34380 -15.55972 -14.92839 -14.52887 -14.44615 -14.13681 -13.67533 -13.30209 -12.71499 -12.52600 -12.17517 -12.10032 -11.76760 -11.40446 -11.24999 -11.16615 -11.04194 -10.84645 -10.81927 -10.58737 -10.50276 -10.25369 -10.02759 -9.91156 -9.83998 -9.54968 -9.40883 -8.48991 -8.23331 -7.36659 -6.82153 -5.92364 -3.96852 3.32385 3.40306 3.43587 4.45822 4.76592 5.08428 5.26147 5.37483 5.40925 5.67754 5.85690 5.90561 6.01618 6.04948 6.10029 6.17256 6.20828 6.25988 6.29075 6.37583 6.43816 6.49615 6.53393 6.68214 6.70768 6.83001 6.87805 6.92846 7.10540 7.14704 7.27163 7.40580 7.53782 7.76089 7.89310 8.06776 8.23521 8.42055 8.53605 8.76922 9.11027 9.65782 11.11670 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.010869 C = 0.008411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.372494 B = 2575.536670 C = 3328.216299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 N -0.541 5.541 4 C 0.062 3.938 5 C 0.194 3.806 6 H 0.091 0.909 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.063 3.937 10 N -0.871 5.871 11 Si 0.886 3.114 12 H -0.285 1.285 13 H -0.288 1.288 14 H -0.276 1.276 15 N -0.546 5.546 16 C 0.044 3.956 17 C 0.072 3.928 18 C -0.062 4.062 19 C -0.144 4.144 20 C -0.131 4.131 21 C 0.088 3.912 22 H 0.030 0.970 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.012 0.988 26 H 0.052 0.948 27 H -0.005 1.005 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.012 0.988 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.057 0.943 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 -3.047 1.887 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 N -0.265 5.265 4 C -0.065 4.065 5 C 0.089 3.911 6 H 0.108 0.892 7 C -0.561 4.561 8 H 0.083 0.917 9 C -0.139 4.139 10 N -0.509 5.509 11 Si 0.714 3.286 12 H -0.212 1.212 13 H -0.214 1.214 14 H -0.201 1.201 15 N -0.270 5.270 16 C -0.105 4.105 17 C -0.056 4.056 18 C -0.063 4.063 19 C -0.201 4.201 20 C -0.189 4.189 21 C -0.042 4.042 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.013 0.987 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 7.058 -2.497 2.575 7.917 hybrid contribution -0.209 -0.983 -1.786 2.050 sum 6.849 -3.480 0.789 7.723 Atomic orbital electron populations 1.21772 0.93917 0.98628 1.05305 1.21894 0.97141 0.88992 0.98095 1.58971 1.15393 1.14809 1.37321 1.22674 0.99116 0.98768 0.85948 1.19777 0.83931 0.86436 1.00979 0.89188 1.21536 0.91340 1.24653 1.18592 0.91721 1.24921 0.98281 0.95309 0.95402 1.70043 1.18752 1.30831 1.31308 0.86701 0.81952 0.79554 0.80348 1.21166 1.21383 1.20109 1.62288 1.02303 1.45450 1.16981 1.22163 0.99126 0.99676 0.89522 1.21800 0.93708 0.95441 0.94694 1.20441 0.95460 0.94885 0.95536 1.22341 1.00398 1.01643 0.95732 1.21833 0.96229 1.01299 0.99521 1.21016 0.89180 0.95798 0.98221 0.95141 0.91677 0.90198 0.96981 0.92923 0.98693 0.88425 0.93256 0.96758 0.90689 0.94961 0.92823 0.96972 0.95723 0.91104 0.88151 0.93619 0.92608 0.92862 0.92493 0.98305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.65 37.16 0.36 -2.32 16 2 C 0.07 1.24 5.66 -3.82 -0.02 1.22 16 3 N -0.54 -11.10 2.82 -239.69 -0.68 -11.78 16 4 C 0.06 1.44 4.22 -4.50 -0.02 1.42 16 5 C 0.19 4.68 1.47 -69.51 -0.10 4.57 16 6 H 0.09 2.38 4.17 -51.93 -0.22 2.16 16 7 C -0.52 -13.66 7.85 -34.44 -0.27 -13.93 16 8 H 0.06 1.69 5.12 -52.49 -0.27 1.43 16 9 C 0.06 1.66 5.03 -17.82 -0.09 1.57 16 10 N -0.87 -22.93 10.75 55.43 0.60 -22.33 16 11 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 N -0.55 -11.85 3.88 -237.35 -0.92 -12.77 16 16 C 0.04 0.89 8.49 60.07 0.51 1.40 16 17 C 0.07 1.36 4.19 -4.31 -0.02 1.34 16 18 C -0.06 -1.10 0.77 -154.85 -0.12 -1.22 16 19 C -0.14 -2.79 7.38 37.16 0.27 -2.52 16 20 C -0.13 -1.86 7.96 37.16 0.30 -1.56 16 21 C 0.09 1.61 3.96 -6.55 -0.03 1.59 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.08 1.76 5.16 -51.93 -0.27 1.49 16 25 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 26 H 0.05 0.88 7.76 -51.93 -0.40 0.48 16 27 H -0.01 -0.12 6.28 -51.93 -0.33 -0.45 16 28 H 0.10 2.48 4.20 -51.93 -0.22 2.26 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.01 0.30 7.60 -51.93 -0.39 -0.10 16 31 H 0.07 1.59 6.00 -51.93 -0.31 1.28 16 32 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 33 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 34 H 0.01 0.24 6.41 -51.93 -0.33 -0.09 16 35 H 0.02 0.42 7.72 -51.93 -0.40 0.02 16 36 H 0.07 1.48 6.57 -51.93 -0.34 1.14 16 37 H 0.10 2.25 4.64 -51.93 -0.24 2.01 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.75 8.10 -51.92 -0.42 0.33 16 40 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 42 H 0.00 -0.02 7.59 -51.93 -0.39 -0.41 16 LS Contribution 294.63 15.07 4.44 4.44 Total: -1.00 -25.81 294.63 -7.81 -33.61 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.00 Total: 1.60 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 0.77 Total: -8.45 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.00 Total: -46.89 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.81 -7.81 -33.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.493 kcal (2) G-P(sol) polarization free energy of solvation -25.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds