Wall clock time and date at job start Mon Mar 30 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47039 * 2 1 4 4 C 1.47690 * 111.00060 * 293.95438 * 3 2 1 5 5 C 1.50779 * 108.09865 * 152.01078 * 4 3 2 6 6 H 1.08994 * 108.99116 * 333.97270 * 5 4 3 7 7 C 1.50704 * 108.98800 * 215.23379 * 5 4 3 8 8 H 1.07998 * 120.00319 * 245.43497 * 7 5 4 9 9 C 1.37884 * 119.99897 * 65.42934 * 7 5 4 10 10 N 1.31511 * 119.99967 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99773 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47080 * 90.00172 * 11 9 7 13 13 H 1.48503 * 109.47065 * 209.99918 * 11 9 7 14 14 H 1.48499 * 109.47098 * 330.00161 * 11 9 7 15 15 N 1.47741 * 111.92008 * 94.60704 * 5 4 3 16 16 C 1.46904 * 110.99832 * 84.93637 * 15 5 4 17 17 C 1.48065 * 113.78694 * 318.87239 * 15 5 4 18 18 C 1.50745 * 112.93491 * 318.28252 * 17 15 5 19 19 C 1.53000 * 109.55837 * 332.82341 * 18 17 15 20 20 C 1.53001 * 109.65174 * 212.54746 * 18 17 15 21 21 C 1.40083 * 110.99845 * 165.31838 * 3 2 1 22 22 H 1.09000 * 109.46950 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46959 * 299.99731 * 1 2 3 24 24 H 1.08993 * 109.47136 * 59.99945 * 1 2 3 25 25 H 1.08997 * 109.47254 * 239.99944 * 2 1 3 26 26 H 1.09004 * 109.46652 * 120.00025 * 2 1 3 27 27 H 1.09005 * 109.73378 * 271.65782 * 4 3 2 28 28 H 1.08991 * 109.73702 * 32.35139 * 4 3 2 29 29 H 0.97000 * 119.99726 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47208 * 307.24338 * 16 15 5 31 31 H 1.08999 * 109.47278 * 67.24659 * 16 15 5 32 32 H 1.09003 * 109.47089 * 187.24571 * 16 15 5 33 33 H 1.09000 * 108.78677 * 197.39404 * 17 15 5 34 34 H 1.08992 * 108.79550 * 79.18066 * 17 15 5 35 35 H 1.09003 * 109.46736 * 218.59724 * 19 18 17 36 36 H 1.09001 * 109.47221 * 338.59716 * 19 18 17 37 37 H 1.08993 * 109.47376 * 98.59751 * 19 18 17 38 38 H 1.08998 * 109.47245 * 300.49334 * 20 18 17 39 39 H 1.09008 * 109.46539 * 60.48698 * 20 18 17 40 40 H 1.08995 * 109.47550 * 180.48707 * 20 18 17 41 41 H 1.09005 * 109.07300 * 308.66954 * 21 3 2 42 42 H 1.09004 * 109.07501 * 67.68530 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6683 2.0706 -1.2600 5 6 1.5448 3.5454 -0.9721 6 1 1.2835 3.6813 0.0773 7 6 0.4460 4.1217 -1.8275 8 1 0.6812 4.8463 -2.5929 9 6 -0.8598 3.7237 -1.6329 10 7 -1.1462 2.8408 -0.7012 11 14 -2.2217 4.4374 -2.6937 12 1 -2.4048 3.5909 -3.8999 13 1 -3.4870 4.4728 -1.9171 14 1 -1.8560 5.8160 -3.1072 15 7 2.8019 4.2693 -1.2523 16 6 2.8910 4.6398 -2.6710 17 6 4.0177 3.5458 -0.8154 18 6 3.8591 2.8915 0.5333 19 6 2.8256 3.6615 1.3578 20 6 5.2021 2.8913 1.2663 21 6 3.3798 1.4365 0.3315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.4511 1.9043 -2.0002 28 1 0.7192 1.6879 -1.6350 29 1 -2.0648 2.5611 -0.5641 30 1 2.7334 3.7554 -3.2881 31 1 2.1283 5.3838 -2.9008 32 1 3.8775 5.0553 -2.8768 33 1 4.8477 4.2508 -0.7682 34 1 4.2535 2.7783 -1.5525 35 1 3.1488 3.7033 2.3980 36 1 2.7296 4.6742 0.9661 37 1 1.8621 3.1556 1.2969 38 1 5.9382 2.3458 0.6758 39 1 5.5388 3.9184 1.4078 40 1 5.0861 2.4100 2.2372 41 1 3.5435 0.8767 1.2523 42 1 3.9595 0.9797 -0.4706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220426541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:39 Heat of formation + Delta-G solvation = 26.858587 kcal Electronic energy + Delta-G solvation = -19712.041673 eV Core-core repulsion = 17113.818185 eV Total energy + Delta-G solvation = -2598.223488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28079 -37.14554 -36.23583 -34.09888 -31.56495 -30.15948 -28.40404 -27.94237 -26.63042 -25.13824 -24.94513 -22.15299 -20.73524 -19.47696 -18.25286 -17.26277 -16.52224 -16.25293 -16.09878 -15.80525 -15.32659 -14.84546 -14.25788 -14.16427 -13.81074 -13.51350 -13.31564 -13.11219 -12.80843 -12.72005 -12.69343 -12.56708 -12.50684 -12.23584 -12.12201 -11.85670 -11.73889 -11.54477 -11.44652 -11.14270 -11.07713 -10.41677 -10.15481 -8.99423 -8.52017 -7.92955 -6.02121 1.43642 1.47321 1.54568 2.50509 3.19241 3.38933 3.46408 3.83212 4.01590 4.20227 4.44173 4.46438 4.51635 4.56646 4.67462 4.71456 4.73404 4.80587 4.81320 4.87335 4.92883 5.01860 5.09419 5.15983 5.19316 5.23234 5.31722 5.39170 5.45546 5.52470 5.56471 5.74976 5.84150 5.88528 6.03523 6.30469 6.46255 6.68590 6.79180 7.00090 7.13440 7.62421 9.09076 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.010869 C = 0.008411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.372494 B = 2575.536670 C = 3328.216299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.066 3.934 3 N -0.551 5.551 4 C 0.081 3.919 5 C 0.204 3.796 6 H 0.068 0.932 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 N -0.882 5.882 11 Si 0.940 3.060 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.277 1.277 15 N -0.558 5.558 16 C 0.050 3.950 17 C 0.072 3.928 18 C -0.063 4.063 19 C -0.132 4.132 20 C -0.123 4.123 21 C 0.085 3.915 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.015 0.985 26 H 0.079 0.921 27 H -0.018 1.018 28 H 0.070 0.930 29 H 0.256 0.744 30 H 0.000 1.000 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.004 0.996 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.078 0.922 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -3.525 2.545 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 N -0.274 5.274 4 C -0.048 4.048 5 C 0.097 3.903 6 H 0.085 0.915 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.176 4.176 10 N -0.520 5.520 11 Si 0.767 3.233 12 H -0.210 1.210 13 H -0.213 1.213 14 H -0.202 1.202 15 N -0.282 5.282 16 C -0.099 4.099 17 C -0.056 4.056 18 C -0.064 4.064 19 C -0.190 4.190 20 C -0.181 4.181 21 C -0.044 4.044 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.098 0.902 27 H 0.000 1.000 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 8.571 -2.977 3.236 9.633 hybrid contribution -0.669 -0.832 -1.975 2.245 sum 7.903 -3.809 1.261 8.863 Atomic orbital electron populations 1.21629 0.94655 0.99601 1.02678 1.21961 0.96483 0.88251 0.99443 1.58936 1.17058 1.15803 1.35647 1.22276 0.97240 0.98458 0.86793 1.19504 0.84643 0.87029 0.99100 0.91501 1.21835 0.92506 1.24885 1.18977 0.92334 1.25481 0.99916 0.95742 0.96441 1.70153 1.18773 1.31155 1.31920 0.85862 0.79684 0.78737 0.78988 1.21037 1.21325 1.20196 1.62221 1.02584 1.45759 1.17640 1.22089 1.00319 0.98734 0.88715 1.21916 0.92817 0.95592 0.95232 1.20523 0.97022 0.93987 0.94837 1.22116 0.99467 1.00147 0.97235 1.21765 0.94028 1.02394 0.99871 1.21125 0.87725 0.96562 0.99014 0.92360 0.93595 0.93334 0.96685 0.90229 0.99981 0.91141 0.93498 0.98172 0.92082 0.92000 0.90866 0.97747 0.93612 0.93215 0.91403 0.92164 0.91735 0.91441 0.90328 0.98339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.65 71.98 0.69 -4.22 16 2 C 0.07 2.37 5.66 86.31 0.49 2.86 16 3 N -0.55 -22.32 2.82 -912.26 -2.57 -24.89 16 4 C 0.08 3.79 4.22 85.43 0.36 4.15 16 5 C 0.20 9.99 1.47 43.29 0.06 10.06 16 6 H 0.07 3.64 4.17 -2.39 -0.01 3.63 16 7 C -0.54 -29.14 7.85 25.60 0.20 -28.94 16 8 H 0.06 3.15 5.12 -2.91 -0.01 3.13 16 9 C 0.03 1.36 5.03 84.66 0.43 1.79 16 10 N -0.88 -47.59 10.75 21.45 0.23 -47.36 16 11 Si 0.94 43.26 29.54 68.60 2.03 45.28 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 N -0.56 -24.17 3.88 -904.84 -3.51 -27.68 16 16 C 0.05 2.03 8.49 127.69 1.08 3.11 16 17 C 0.07 2.63 4.19 85.35 0.36 2.98 16 18 C -0.06 -2.09 0.77 -52.40 -0.04 -2.13 16 19 C -0.13 -5.00 7.38 71.98 0.53 -4.47 16 20 C -0.12 -3.01 7.96 71.98 0.57 -2.44 16 21 C 0.09 2.95 3.96 88.05 0.35 3.30 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 2.18 5.16 -2.39 -0.01 2.17 16 25 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 26 H 0.08 2.45 7.76 -2.38 -0.02 2.43 16 27 H -0.02 -0.86 6.28 -2.38 -0.01 -0.88 16 28 H 0.07 3.70 4.20 -2.39 -0.01 3.69 16 29 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.00 -0.01 7.60 -2.39 -0.02 -0.03 16 31 H 0.06 2.62 6.00 -2.39 -0.01 2.61 16 32 H 0.06 2.11 8.02 -2.39 -0.02 2.09 16 33 H 0.07 2.38 7.70 -2.39 -0.02 2.36 16 34 H 0.00 0.16 6.41 -2.39 -0.02 0.15 16 35 H 0.04 1.48 7.72 -2.39 -0.02 1.46 16 36 H 0.05 2.06 6.57 -2.39 -0.02 2.05 16 37 H 0.07 3.05 4.64 -2.39 -0.01 3.04 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.49 8.10 -2.38 -0.02 1.47 16 40 H 0.07 1.48 8.13 -2.39 -0.02 1.47 16 41 H 0.08 2.39 7.67 -2.38 -0.02 2.37 16 42 H 0.00 -0.04 7.59 -2.38 -0.02 -0.06 16 Total: -1.00 -56.18 294.63 2.25 -53.93 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.99 Total: 14.67 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.09 Total: -13.96 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -5.85 Total: -99.93 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -56.18 2.25 -53.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.786 kcal (2) G-P(sol) polarization free energy of solvation -56.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds