Wall clock time and date at job start Mon Mar 30 2020 03:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47037 * 2 1 4 4 C 1.44249 * 110.95648 * 300.32258 * 3 2 1 5 5 C 1.54323 * 112.53710 * 217.57789 * 4 3 2 6 6 C 1.53007 * 109.02678 * 198.33477 * 5 4 3 7 7 C 1.52991 * 109.03030 * 79.49230 * 5 4 3 8 8 C 1.54313 * 111.72370 * 318.90921 * 5 4 3 9 9 N 1.44181 * 112.61531 * 318.92272 * 8 5 4 10 10 C 1.46901 * 111.00240 * 217.52730 * 9 8 5 11 11 C 1.48084 * 109.89476 * 94.35068 * 9 8 5 12 12 C 1.46092 * 112.16055 * 279.63727 * 11 9 8 13 13 H 1.09001 * 108.94555 * 300.08875 * 12 11 9 14 14 C 1.50703 * 108.94359 * 181.37438 * 12 11 9 15 15 H 1.08006 * 119.99439 * 244.05072 * 14 12 11 16 16 C 1.37870 * 120.00247 * 64.05435 * 14 12 11 17 17 N 1.31508 * 120.00160 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00041 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47206 * 270.00239 * 18 16 14 20 20 H 1.48503 * 109.47275 * 29.99959 * 18 16 14 21 21 H 1.48493 * 109.47311 * 150.00102 * 18 16 14 22 22 H 1.08996 * 109.47415 * 303.48596 * 1 2 3 23 23 H 1.08998 * 109.47054 * 63.49545 * 1 2 3 24 24 H 1.09005 * 109.46758 * 183.48884 * 1 2 3 25 25 H 1.08998 * 109.47645 * 240.00038 * 2 1 3 26 26 H 1.08999 * 109.47283 * 119.99660 * 2 1 3 27 27 H 1.09003 * 108.89866 * 96.78530 * 4 3 2 28 28 H 1.09000 * 108.89141 * 338.35925 * 4 3 2 29 29 H 1.08996 * 109.46842 * 182.22387 * 6 5 4 30 30 H 1.08998 * 109.46777 * 302.21357 * 6 5 4 31 31 H 1.08994 * 109.47401 * 62.21751 * 6 5 4 32 32 H 1.09001 * 109.47054 * 297.78046 * 7 5 4 33 33 H 1.09001 * 109.47747 * 57.77720 * 7 5 4 34 34 H 1.09004 * 109.47336 * 177.78515 * 7 5 4 35 35 H 1.09000 * 108.85001 * 198.11745 * 8 5 4 36 36 H 1.08996 * 108.77447 * 79.67726 * 8 5 4 37 37 H 1.08997 * 109.46533 * 301.41850 * 10 9 8 38 38 H 1.08997 * 109.46665 * 61.41789 * 10 9 8 39 39 H 1.08995 * 109.46686 * 181.41685 * 10 9 8 40 40 H 1.08996 * 108.93946 * 158.94772 * 11 9 8 41 41 H 1.09003 * 108.86918 * 40.27928 * 11 9 8 42 42 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5504 2.0981 -1.1628 5 6 2.6094 3.0670 -1.7297 6 6 1.9173 4.0888 -2.6342 7 6 3.6193 2.2722 -2.5597 8 6 3.3585 3.8150 -0.6069 9 7 2.4829 4.2373 0.4579 10 6 2.8791 5.5542 0.9744 11 6 2.4770 3.2237 1.5374 12 6 1.6007 2.0960 1.2297 13 1 0.5835 2.4643 1.0964 14 6 1.6232 1.1293 2.3856 15 1 2.0162 0.1327 2.2485 16 6 1.1419 1.5170 3.6180 17 7 1.1611 0.6733 4.6266 18 14 0.4627 3.2409 3.8553 19 1 1.5586 4.1516 4.2736 20 1 -0.1211 3.7231 2.5778 21 1 -0.5894 3.2186 4.9030 22 1 -0.3634 0.5670 0.8570 23 1 -0.3633 0.4586 -0.9196 24 1 -0.3633 -1.0258 0.0625 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 0.6609 2.6672 -0.8928 28 1 1.2836 1.3769 -1.9352 29 1 2.6638 4.7527 -3.0700 30 1 1.3856 3.5677 -3.4304 31 1 1.2095 4.6735 -2.0468 32 1 4.1317 1.5547 -1.9188 33 1 3.0975 1.7406 -3.3555 34 1 4.3485 2.9549 -2.9961 35 1 3.8447 4.6930 -1.0322 36 1 4.1218 3.1553 -0.1945 37 1 3.9062 5.5084 1.3362 38 1 2.8074 6.2938 0.1769 39 1 2.2176 5.8374 1.7931 40 1 2.1388 3.6928 2.4613 41 1 3.4926 2.8542 1.6796 42 1 0.8228 0.9462 5.4938 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220427053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:13 Heat of formation + Delta-G solvation = 24.185140 kcal Electronic energy + Delta-G solvation = -19534.623300 eV Core-core repulsion = 16936.283882 eV Total energy + Delta-G solvation = -2598.339417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38255 -36.00266 -35.10050 -32.47649 -30.37371 -28.41109 -26.88627 -26.63170 -25.45501 -24.21755 -22.38804 -21.21687 -19.24790 -18.01901 -16.92701 -15.67928 -15.00210 -14.65800 -14.31632 -14.20844 -13.76945 -13.31878 -12.92846 -12.85405 -12.56848 -12.37686 -12.23135 -11.96068 -11.66698 -11.42843 -11.31378 -11.12851 -11.04328 -10.61774 -10.54387 -10.49154 -10.31807 -10.02976 -9.93110 -9.55702 -9.43875 -8.79375 -8.61805 -7.67904 -7.20532 -6.10578 -4.11174 3.22259 3.35367 3.41070 4.35720 4.52994 4.89139 5.19405 5.25557 5.32418 5.57034 5.65358 5.73648 5.84775 5.91606 5.93623 6.02307 6.04006 6.13506 6.15415 6.17894 6.23197 6.32040 6.34890 6.37784 6.47799 6.51463 6.55758 6.60278 6.70764 6.79040 6.82336 7.13607 7.16211 7.37528 7.51302 7.72621 7.83100 8.06471 8.25690 8.68307 8.96001 9.50120 11.00554 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023161 B = 0.011432 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.632489 B = 2448.692066 C = 3223.547541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.523 5.523 4 C 0.078 3.922 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.133 4.133 8 C 0.080 3.920 9 N -0.547 5.547 10 C 0.029 3.971 11 C 0.069 3.931 12 C 0.187 3.813 13 H 0.011 0.989 14 C -0.516 4.516 15 H 0.092 0.908 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.279 1.279 20 H -0.258 1.258 21 H -0.295 1.295 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 5.702 -11.417 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.065 4.065 3 N -0.246 5.246 4 C -0.052 4.052 5 C -0.054 4.054 6 C -0.192 4.192 7 C -0.191 4.191 8 C -0.049 4.049 9 N -0.270 5.270 10 C -0.120 4.120 11 C -0.057 4.057 12 C 0.080 3.920 13 H 0.028 0.972 14 C -0.555 4.555 15 H 0.109 0.891 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.206 1.206 20 H -0.182 1.182 21 H -0.222 1.222 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.249 5.709 -11.418 12.962 hybrid contribution -0.472 1.000 0.705 1.311 sum 1.778 6.709 -10.713 12.765 Atomic orbital electron populations 1.22361 0.98991 1.01090 1.01369 1.22129 0.92545 0.90394 1.01449 1.61560 1.59201 1.01797 1.02020 1.21733 0.95224 0.95035 0.93174 1.21026 0.95610 0.94574 0.94141 1.21822 1.00170 0.98515 0.98660 1.21810 0.98503 0.99662 0.99110 1.21732 0.93495 0.97371 0.92293 1.61621 1.52101 1.02530 1.10782 1.22374 0.98292 0.91574 0.99751 1.21680 1.00800 0.91799 0.91429 1.18628 0.93033 0.91474 0.88892 0.97185 1.21296 1.41318 1.00293 0.92582 0.89082 1.24950 0.95282 0.96721 0.95970 1.69867 1.46727 1.35168 1.01637 0.87089 0.78902 0.85764 0.78432 1.20606 1.18228 1.22186 0.90846 0.94666 0.93741 0.93611 0.88707 0.94549 0.93530 0.93568 0.93584 0.92322 0.91973 0.93375 0.93859 0.93523 0.93719 0.96221 0.92175 0.92206 0.92674 0.93937 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 9.24 37.16 0.34 -3.07 16 2 C 0.06 1.23 5.37 -3.82 -0.02 1.21 16 3 N -0.52 -10.72 4.43 -232.34 -1.03 -11.75 16 4 C 0.08 1.41 2.94 -4.55 -0.01 1.39 16 5 C -0.05 -0.81 0.86 -153.13 -0.13 -0.94 16 6 C -0.13 -1.83 8.22 37.16 0.31 -1.52 16 7 C -0.13 -1.84 8.24 37.15 0.31 -1.53 16 8 C 0.08 1.35 4.05 -4.59 -0.02 1.33 16 9 N -0.55 -10.36 4.52 -247.40 -1.12 -11.48 16 10 C 0.03 0.46 9.23 60.07 0.55 1.02 16 11 C 0.07 1.54 4.04 -6.45 -0.03 1.51 16 12 C 0.19 4.37 0.75 -71.48 -0.05 4.31 16 13 H 0.01 0.27 5.46 -51.93 -0.28 -0.02 16 14 C -0.52 -13.78 7.40 -34.44 -0.25 -14.03 16 15 H 0.09 2.61 5.55 -52.48 -0.29 2.31 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 18 Si 0.87 21.46 24.58 -169.99 -4.18 17.28 16 19 H -0.28 -6.74 6.91 56.52 0.39 -6.35 16 20 H -0.26 -6.29 6.39 56.52 0.36 -5.93 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H 0.07 1.62 6.22 -51.93 -0.32 1.30 16 23 H 0.03 0.61 7.02 -51.93 -0.36 0.24 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 26 H 0.09 2.09 5.40 -51.93 -0.28 1.81 16 27 H 0.04 0.72 7.00 -51.93 -0.36 0.36 16 28 H 0.05 0.78 6.84 -51.93 -0.36 0.43 16 29 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.70 7.37 -51.93 -0.38 0.31 16 36 H 0.04 0.82 6.97 -51.93 -0.36 0.46 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 40 H 0.06 1.30 3.14 -51.93 -0.16 1.14 16 41 H 0.04 0.98 7.36 -51.93 -0.38 0.60 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -28.11 299.42 -7.51 -35.62 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.36 Total: -0.01 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 0.89 Total: -8.38 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.37 Total: -49.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.18 Total: 17.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.11 -7.51 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220427053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.810 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds