Wall clock time and date at job start Mon Mar 30 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47037 * 2 1 4 4 C 1.44249 * 110.95648 * 300.32258 * 3 2 1 5 5 C 1.54323 * 112.53710 * 217.57789 * 4 3 2 6 6 C 1.53007 * 109.02678 * 198.33477 * 5 4 3 7 7 C 1.52991 * 109.03030 * 79.49230 * 5 4 3 8 8 C 1.54313 * 111.72370 * 318.90921 * 5 4 3 9 9 N 1.44181 * 112.61531 * 318.92272 * 8 5 4 10 10 C 1.46901 * 111.00240 * 217.52730 * 9 8 5 11 11 C 1.48084 * 109.89476 * 94.35068 * 9 8 5 12 12 C 1.46092 * 112.16055 * 279.63727 * 11 9 8 13 13 H 1.09001 * 108.94555 * 300.08875 * 12 11 9 14 14 C 1.50703 * 108.94359 * 181.37438 * 12 11 9 15 15 H 1.08006 * 119.99439 * 244.05072 * 14 12 11 16 16 C 1.37870 * 120.00247 * 64.05435 * 14 12 11 17 17 N 1.31508 * 120.00160 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00041 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47206 * 270.00239 * 18 16 14 20 20 H 1.48503 * 109.47275 * 29.99959 * 18 16 14 21 21 H 1.48493 * 109.47311 * 150.00102 * 18 16 14 22 22 H 1.08996 * 109.47415 * 303.48596 * 1 2 3 23 23 H 1.08998 * 109.47054 * 63.49545 * 1 2 3 24 24 H 1.09005 * 109.46758 * 183.48884 * 1 2 3 25 25 H 1.08998 * 109.47645 * 240.00038 * 2 1 3 26 26 H 1.08999 * 109.47283 * 119.99660 * 2 1 3 27 27 H 1.09003 * 108.89866 * 96.78530 * 4 3 2 28 28 H 1.09000 * 108.89141 * 338.35925 * 4 3 2 29 29 H 1.08996 * 109.46842 * 182.22387 * 6 5 4 30 30 H 1.08998 * 109.46777 * 302.21357 * 6 5 4 31 31 H 1.08994 * 109.47401 * 62.21751 * 6 5 4 32 32 H 1.09001 * 109.47054 * 297.78046 * 7 5 4 33 33 H 1.09001 * 109.47747 * 57.77720 * 7 5 4 34 34 H 1.09004 * 109.47336 * 177.78515 * 7 5 4 35 35 H 1.09000 * 108.85001 * 198.11745 * 8 5 4 36 36 H 1.08996 * 108.77447 * 79.67726 * 8 5 4 37 37 H 1.08997 * 109.46533 * 301.41850 * 10 9 8 38 38 H 1.08997 * 109.46665 * 61.41789 * 10 9 8 39 39 H 1.08995 * 109.46686 * 181.41685 * 10 9 8 40 40 H 1.08996 * 108.93946 * 158.94772 * 11 9 8 41 41 H 1.09003 * 108.86918 * 40.27928 * 11 9 8 42 42 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5504 2.0981 -1.1628 5 6 2.6094 3.0670 -1.7297 6 6 1.9173 4.0888 -2.6342 7 6 3.6193 2.2722 -2.5597 8 6 3.3585 3.8150 -0.6069 9 7 2.4829 4.2373 0.4579 10 6 2.8791 5.5542 0.9744 11 6 2.4770 3.2237 1.5374 12 6 1.6007 2.0960 1.2297 13 1 0.5835 2.4643 1.0964 14 6 1.6232 1.1293 2.3856 15 1 2.0162 0.1327 2.2485 16 6 1.1419 1.5170 3.6180 17 7 1.1611 0.6733 4.6266 18 14 0.4627 3.2409 3.8553 19 1 1.5586 4.1516 4.2736 20 1 -0.1211 3.7231 2.5778 21 1 -0.5894 3.2186 4.9030 22 1 -0.3634 0.5670 0.8570 23 1 -0.3633 0.4586 -0.9196 24 1 -0.3633 -1.0258 0.0625 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 0.6609 2.6672 -0.8928 28 1 1.2836 1.3769 -1.9352 29 1 2.6638 4.7527 -3.0700 30 1 1.3856 3.5677 -3.4304 31 1 1.2095 4.6735 -2.0468 32 1 4.1317 1.5547 -1.9188 33 1 3.0975 1.7406 -3.3555 34 1 4.3485 2.9549 -2.9961 35 1 3.8447 4.6930 -1.0322 36 1 4.1218 3.1553 -0.1945 37 1 3.9062 5.5084 1.3362 38 1 2.8074 6.2938 0.1769 39 1 2.2176 5.8374 1.7931 40 1 2.1388 3.6928 2.4613 41 1 3.4926 2.8542 1.6796 42 1 0.8228 0.9462 5.4938 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220427053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:12 Heat of formation + Delta-G solvation = 3.873691 kcal Electronic energy + Delta-G solvation = -19535.504070 eV Core-core repulsion = 16936.283882 eV Total energy + Delta-G solvation = -2599.220188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93014 -37.55014 -36.53502 -34.46807 -32.12593 -30.04675 -28.00867 -27.87416 -27.17113 -25.83016 -24.08504 -22.72450 -20.98554 -19.40750 -18.88873 -17.38740 -16.60230 -16.30479 -16.01230 -15.71266 -15.23271 -14.76083 -14.58309 -14.45259 -14.03049 -13.90065 -13.69068 -13.27078 -13.14058 -12.98278 -12.74882 -12.66387 -12.44661 -12.43009 -12.20077 -11.99698 -11.64482 -11.53465 -11.46904 -11.21183 -11.12224 -10.78164 -10.69492 -9.17178 -8.86970 -8.28488 -6.31669 1.22659 1.31284 1.41484 2.27899 2.96596 3.19133 3.30566 3.92743 4.08500 4.28327 4.32177 4.39263 4.44071 4.48489 4.52323 4.64716 4.68810 4.75461 4.76929 4.81904 4.92493 4.94454 4.96335 5.02764 5.05192 5.12956 5.16210 5.23570 5.38572 5.41194 5.43910 5.47240 5.55778 5.62791 5.71731 6.00796 6.25099 6.39779 6.46837 6.79396 6.87521 7.33347 8.85520 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023161 B = 0.011432 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.632489 B = 2448.692066 C = 3223.547541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 N -0.526 5.526 4 C 0.078 3.922 5 C -0.053 4.053 6 C -0.127 4.127 7 C -0.127 4.127 8 C 0.078 3.922 9 N -0.552 5.552 10 C 0.026 3.974 11 C 0.077 3.923 12 C 0.200 3.800 13 H -0.009 1.009 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.022 3.978 17 N -0.941 5.941 18 Si 0.925 3.075 19 H -0.268 1.268 20 H -0.254 1.254 21 H -0.296 1.296 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.026 0.974 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 7.482 -14.121 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.065 4.065 3 N -0.249 5.249 4 C -0.051 4.051 5 C -0.055 4.055 6 C -0.184 4.184 7 C -0.184 4.184 8 C -0.050 4.050 9 N -0.276 5.276 10 C -0.122 4.122 11 C -0.050 4.050 12 C 0.091 3.909 13 H 0.008 0.992 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.581 5.581 18 Si 0.753 3.247 19 H -0.194 1.194 20 H -0.178 1.178 21 H -0.224 1.224 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.603 7.503 -14.150 16.226 hybrid contribution -0.545 0.372 1.469 1.611 sum 2.058 7.875 -12.681 15.068 Atomic orbital electron populations 1.22235 0.98414 1.01576 1.00638 1.22107 0.92995 0.90146 1.01292 1.61598 1.59297 1.02074 1.01887 1.21822 0.95473 0.95477 0.92304 1.21083 0.95438 0.94667 0.94269 1.21749 1.00323 0.98065 0.98284 1.21742 0.98362 0.99525 0.98789 1.21828 0.92973 0.98258 0.91967 1.61590 1.53289 1.02692 1.10028 1.22484 0.98434 0.90586 1.00717 1.21367 0.99183 0.92332 0.92140 1.18370 0.92285 0.91250 0.88945 0.99189 1.21526 1.39530 0.99927 0.93733 0.91930 1.25619 0.95997 1.00096 0.95875 1.69994 1.48774 1.37141 1.02228 0.86170 0.78409 0.81903 0.78233 1.19447 1.17801 1.22356 0.94543 0.92633 0.92287 0.90600 0.91934 0.96502 0.91899 0.91467 0.92275 0.93691 0.93789 0.91988 0.91802 0.90804 0.95654 0.95521 0.89101 0.92929 0.94126 0.95595 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 9.24 71.98 0.66 -5.75 16 2 C 0.06 2.45 5.37 86.30 0.46 2.91 16 3 N -0.53 -21.39 4.43 -888.99 -3.94 -25.32 16 4 C 0.08 2.67 2.94 87.25 0.26 2.93 16 5 C -0.05 -1.49 0.86 -51.29 -0.04 -1.54 16 6 C -0.13 -2.93 8.22 71.98 0.59 -2.34 16 7 C -0.13 -3.03 8.24 71.98 0.59 -2.44 16 8 C 0.08 2.44 4.05 87.26 0.35 2.80 16 9 N -0.55 -19.94 4.52 -936.65 -4.23 -24.17 16 10 C 0.03 0.76 9.23 127.69 1.18 1.94 16 11 C 0.08 3.42 4.04 83.95 0.34 3.76 16 12 C 0.20 9.44 0.75 41.82 0.03 9.47 16 13 H -0.01 -0.48 5.46 -2.39 -0.01 -0.49 16 14 C -0.51 -28.18 7.40 25.60 0.19 -27.99 16 15 H 0.06 3.79 5.55 -2.91 -0.02 3.77 16 16 C 0.02 1.27 5.45 84.65 0.46 1.73 16 17 N -0.94 -57.92 13.96 21.44 0.30 -57.62 16 18 Si 0.93 45.35 24.58 68.60 1.69 47.03 16 19 H -0.27 -12.57 6.91 99.48 0.69 -11.88 16 20 H -0.25 -12.15 6.39 99.48 0.64 -11.51 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H 0.04 1.63 6.22 -2.39 -0.01 1.61 16 23 H 0.05 1.84 7.02 -2.39 -0.02 1.83 16 24 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.08 2.52 8.05 -2.39 -0.02 2.51 16 26 H 0.06 2.87 5.40 -2.39 -0.01 2.86 16 27 H 0.02 0.64 7.00 -2.39 -0.02 0.63 16 28 H 0.06 1.93 6.84 -2.39 -0.02 1.91 16 29 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.91 7.37 -2.39 -0.02 1.89 16 36 H 0.03 0.89 6.97 -2.39 -0.02 0.87 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 40 H 0.04 1.91 3.14 -2.39 -0.01 1.90 16 41 H 0.03 1.22 7.36 -2.39 -0.02 1.20 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -62.56 299.42 -0.22 -62.78 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.88 Total: 11.82 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 5.08 Total: -14.52 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -7.87 Total: -107.11 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.69 Total: 47.03 kcal Total: -62.56 -0.22 -62.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220427053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.654 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds