Wall clock time and date at job start Mon Mar 30 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53001 * 109.47051 * 239.99844 * 2 1 3 5 5 N 1.46897 * 109.47160 * 65.00323 * 4 2 1 6 6 C 1.46894 * 111.00171 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.50159 * 223.62421 * 6 5 4 8 8 C 1.53001 * 60.00115 * 252.50511 * 7 6 5 9 9 C 1.53001 * 109.47099 * 120.00196 * 2 1 3 10 10 N 1.46893 * 109.47308 * 183.37171 * 9 2 1 11 11 C 1.46903 * 111.00444 * 71.82521 * 10 9 2 12 12 C 1.46907 * 111.00154 * 195.78091 * 10 9 2 13 13 H 1.08998 * 109.46826 * 300.00024 * 12 10 9 14 14 C 1.53000 * 109.46893 * 59.99620 * 12 10 9 15 15 C 1.50698 * 109.47219 * 179.97438 * 12 10 9 16 16 H 1.07999 * 119.99871 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00041 * 179.97438 * 15 12 10 18 18 N 1.31518 * 119.99477 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46818 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47131 * 299.99980 * 19 17 15 22 22 H 1.48500 * 109.47108 * 60.00692 * 19 17 15 23 23 H 1.09001 * 109.47248 * 175.11968 * 1 2 3 24 24 H 1.08998 * 109.46681 * 295.11967 * 1 2 3 25 25 H 1.08997 * 109.46455 * 55.11798 * 1 2 3 26 26 H 1.09004 * 109.46744 * 185.00460 * 4 2 1 27 27 H 1.09003 * 109.46681 * 304.99936 * 4 2 1 28 28 H 1.00902 * 110.99932 * 56.04542 * 5 4 2 29 29 H 1.09001 * 115.54878 * 9.32662 * 6 5 4 30 30 H 1.09009 * 117.49464 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.50697 * 145.01321 * 7 6 5 32 32 H 1.08994 * 117.49719 * 252.51074 * 8 7 6 33 33 H 1.08998 * 117.52023 * 107.47377 * 8 7 6 34 34 H 1.09001 * 109.47536 * 63.36641 * 9 2 1 35 35 H 1.09005 * 109.46838 * 303.37257 * 9 2 1 36 36 H 1.08994 * 109.46890 * 187.10264 * 11 10 9 37 37 H 1.08998 * 109.46489 * 307.10530 * 11 10 9 38 38 H 1.08999 * 109.46777 * 67.10425 * 11 10 9 39 39 H 1.08997 * 109.47317 * 59.99808 * 14 12 10 40 40 H 1.09005 * 109.47171 * 179.97438 * 14 12 10 41 41 H 1.09001 * 109.47029 * 300.00367 * 14 12 10 42 42 H 0.97001 * 119.99223 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0374 -2.4456 6 6 2.1248 -0.6272 -3.6672 7 6 2.7528 0.2511 -4.7512 8 6 1.3616 -0.3492 -4.9638 9 6 2.0400 -0.7213 1.2492 10 7 3.5067 -0.6512 1.2907 11 6 3.9600 0.7087 1.6119 12 6 4.0538 -1.6271 2.2428 13 1 3.6656 -1.4188 3.2398 14 6 3.6418 -3.0385 1.8197 15 6 5.5573 -1.5262 2.2574 16 1 6.0566 -0.8093 1.6226 17 6 6.2955 -2.3493 3.0812 18 7 5.6874 -3.2227 3.8539 19 14 8.1592 -2.2248 3.0987 20 1 8.7121 -3.2113 4.0614 21 1 8.6871 -2.5099 1.7404 22 1 8.5600 -0.8548 3.5082 23 1 -0.3634 -1.0239 -0.0874 24 1 -0.3632 0.4363 0.9305 25 1 -0.3632 0.5877 -0.8430 26 1 3.1264 -0.7996 -1.2055 27 1 1.6054 -1.7199 -1.2950 28 1 1.9883 0.9872 -2.3966 29 1 2.5350 -1.6276 -3.5293 30 1 2.8144 1.3221 -4.5581 31 1 3.5765 -0.1713 -5.3266 32 1 1.2701 -1.1665 -5.6790 33 1 0.5080 0.3265 -4.9103 34 1 1.7268 -1.7649 1.2196 35 1 1.6281 -0.2435 2.1382 36 1 5.0440 0.7633 1.5128 37 1 3.4962 1.4177 0.9261 38 1 3.6759 0.9541 2.6352 39 1 4.0298 -3.2468 0.8227 40 1 4.0480 -3.7627 2.5259 41 1 2.5543 -3.1116 1.8088 42 1 6.2067 -3.8015 4.4337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227082161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:24 Heat of formation + Delta-G solvation = 23.423425 kcal Electronic energy + Delta-G solvation = -17922.115559 eV Core-core repulsion = 15323.743111 eV Total energy + Delta-G solvation = -2598.372448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.28166 -37.24459 -34.84247 -32.62614 -31.08042 -29.09249 -26.74240 -25.04540 -24.37578 -23.03621 -22.38076 -21.16142 -19.90398 -19.02813 -16.34102 -15.97030 -15.41627 -15.23006 -14.52099 -14.22038 -13.93582 -13.66486 -13.20438 -12.69442 -12.37579 -12.26340 -11.94248 -11.76722 -11.56828 -11.45608 -11.16757 -11.02602 -10.96562 -10.73186 -10.63406 -10.45558 -10.18387 -10.08957 -10.02321 -10.01612 -9.60934 -8.84667 -8.40688 -8.07109 -7.11735 -6.00105 -4.04519 3.31841 3.36309 3.38986 3.82998 4.19728 4.41098 4.91571 4.97709 5.00822 5.18629 5.23572 5.31579 5.48616 5.60987 5.66532 5.74067 5.88890 5.98766 6.02239 6.06892 6.10548 6.17961 6.26073 6.33093 6.44962 6.48251 6.60335 6.68443 6.79704 6.89566 7.07080 7.18028 7.22949 7.48434 7.55384 7.75388 7.84209 8.23293 8.34804 8.63506 9.01979 9.60454 11.06699 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.005498 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.171585 B = 5091.371253 C = 5634.274811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.063 0.937 4 C 0.072 3.928 5 N -0.661 5.661 6 C 0.029 3.971 7 C -0.209 4.209 8 C -0.176 4.176 9 C 0.052 3.948 10 N -0.536 5.536 11 C 0.039 3.961 12 C 0.212 3.788 13 H -0.004 1.004 14 C -0.132 4.132 15 C -0.503 4.503 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.337 0.663 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.011 0.989 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.009 0.991 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 5.789 -11.103 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.057 4.057 5 N -0.290 5.290 6 C -0.082 4.082 7 C -0.248 4.248 8 C -0.214 4.214 9 C -0.077 4.077 10 N -0.261 5.261 11 C -0.109 4.109 12 C 0.106 3.894 13 H 0.014 0.986 14 C -0.190 4.190 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.214 1.214 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.028 0.972 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.268 5.228 -11.417 15.034 hybrid contribution 1.670 0.417 0.905 1.944 sum -6.598 5.645 -10.512 13.635 Atomic orbital electron populations 1.21704 0.95314 1.01574 1.00777 1.21118 0.95034 0.99367 0.94584 0.91838 1.21983 0.99794 0.96569 0.87333 1.60305 1.62314 1.05477 1.00915 1.22408 1.01027 0.98308 0.86422 1.23387 0.96851 0.99592 1.04976 1.23085 0.95078 1.03373 0.99904 1.22182 0.90203 1.00526 0.94791 1.62118 1.05770 1.05290 1.52903 1.22193 1.01594 0.90187 0.96974 1.19229 0.94416 0.87769 0.87992 0.98610 1.21853 0.95623 1.00488 1.01035 1.21116 0.90655 1.19596 1.22758 0.92045 1.24931 0.98534 0.95319 0.95462 1.69887 1.35269 1.22359 1.25794 0.86600 0.85543 0.77698 0.77775 1.21368 1.20285 1.20387 0.93142 0.93775 0.92190 0.92579 0.91563 0.84395 0.87415 0.88945 0.89016 0.89113 0.88725 0.90688 0.95999 0.91042 0.94019 0.97076 0.94808 0.89760 0.97235 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.02 37.16 0.34 -1.44 16 2 C -0.08 -1.21 2.53 -90.62 -0.23 -1.44 16 3 H 0.06 0.94 6.52 -51.93 -0.34 0.60 16 4 C 0.07 1.06 4.86 -3.82 -0.02 1.04 16 5 N -0.66 -8.45 6.32 -106.73 -0.67 -9.12 16 6 C 0.03 0.35 6.31 -67.72 -0.43 -0.07 16 7 C -0.21 -2.17 10.23 -26.73 -0.27 -2.44 16 8 C -0.18 -1.81 10.46 -26.73 -0.28 -2.09 16 9 C 0.05 0.94 4.24 -3.83 -0.02 0.92 16 10 N -0.54 -11.31 3.88 -236.29 -0.92 -12.23 16 11 C 0.04 0.77 9.04 60.07 0.54 1.31 16 12 C 0.21 5.34 2.06 -68.86 -0.14 5.20 16 13 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 14 C -0.13 -3.22 8.79 37.16 0.33 -2.89 16 15 C -0.50 -13.72 7.96 -34.44 -0.27 -13.99 16 16 H 0.06 1.67 6.40 -52.49 -0.34 1.33 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.75 7.89 -51.93 -0.41 0.34 16 26 H 0.06 0.97 7.56 -51.93 -0.39 0.57 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.34 4.09 8.52 -39.29 -0.33 3.76 16 29 H 0.11 1.35 7.90 -51.93 -0.41 0.94 16 30 H 0.09 0.92 8.09 -51.92 -0.42 0.50 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.40 5.63 -51.93 -0.29 1.11 16 35 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.07 1.49 6.35 -51.93 -0.33 1.16 16 37 H 0.04 0.70 6.41 -51.93 -0.33 0.36 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 41 H 0.01 0.20 6.10 -51.93 -0.32 -0.12 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -27.59 326.28 -9.20 -36.79 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.59 Total: 2.59 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.55 Total: -14.36 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.96 Total: -46.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.59 -9.20 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227082161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.218 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds