Wall clock time and date at job start Mon Mar 30 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53001 * 109.47051 * 239.99844 * 2 1 3 5 5 N 1.46897 * 109.47160 * 65.00323 * 4 2 1 6 6 C 1.46894 * 111.00171 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.50159 * 223.62421 * 6 5 4 8 8 C 1.53001 * 60.00115 * 252.50511 * 7 6 5 9 9 C 1.53001 * 109.47099 * 120.00196 * 2 1 3 10 10 N 1.46893 * 109.47308 * 183.37171 * 9 2 1 11 11 C 1.46903 * 111.00444 * 71.82521 * 10 9 2 12 12 C 1.46907 * 111.00154 * 195.78091 * 10 9 2 13 13 H 1.08998 * 109.46826 * 300.00024 * 12 10 9 14 14 C 1.53000 * 109.46893 * 59.99620 * 12 10 9 15 15 C 1.50698 * 109.47219 * 179.97438 * 12 10 9 16 16 H 1.07999 * 119.99871 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00041 * 179.97438 * 15 12 10 18 18 N 1.31518 * 119.99477 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46818 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47131 * 299.99980 * 19 17 15 22 22 H 1.48500 * 109.47108 * 60.00692 * 19 17 15 23 23 H 1.09001 * 109.47248 * 175.11968 * 1 2 3 24 24 H 1.08998 * 109.46681 * 295.11967 * 1 2 3 25 25 H 1.08997 * 109.46455 * 55.11798 * 1 2 3 26 26 H 1.09004 * 109.46744 * 185.00460 * 4 2 1 27 27 H 1.09003 * 109.46681 * 304.99936 * 4 2 1 28 28 H 1.00902 * 110.99932 * 56.04542 * 5 4 2 29 29 H 1.09001 * 115.54878 * 9.32662 * 6 5 4 30 30 H 1.09009 * 117.49464 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.50697 * 145.01321 * 7 6 5 32 32 H 1.08994 * 117.49719 * 252.51074 * 8 7 6 33 33 H 1.08998 * 117.52023 * 107.47377 * 8 7 6 34 34 H 1.09001 * 109.47536 * 63.36641 * 9 2 1 35 35 H 1.09005 * 109.46838 * 303.37257 * 9 2 1 36 36 H 1.08994 * 109.46890 * 187.10264 * 11 10 9 37 37 H 1.08998 * 109.46489 * 307.10530 * 11 10 9 38 38 H 1.08999 * 109.46777 * 67.10425 * 11 10 9 39 39 H 1.08997 * 109.47317 * 59.99808 * 14 12 10 40 40 H 1.09005 * 109.47171 * 179.97438 * 14 12 10 41 41 H 1.09001 * 109.47029 * 300.00367 * 14 12 10 42 42 H 0.97001 * 119.99223 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0374 -2.4456 6 6 2.1248 -0.6272 -3.6672 7 6 2.7528 0.2511 -4.7512 8 6 1.3616 -0.3492 -4.9638 9 6 2.0400 -0.7213 1.2492 10 7 3.5067 -0.6512 1.2907 11 6 3.9600 0.7087 1.6119 12 6 4.0538 -1.6271 2.2428 13 1 3.6656 -1.4188 3.2398 14 6 3.6418 -3.0385 1.8197 15 6 5.5573 -1.5262 2.2574 16 1 6.0566 -0.8093 1.6226 17 6 6.2955 -2.3493 3.0812 18 7 5.6874 -3.2227 3.8539 19 14 8.1592 -2.2248 3.0987 20 1 8.7121 -3.2113 4.0614 21 1 8.6871 -2.5099 1.7404 22 1 8.5600 -0.8548 3.5082 23 1 -0.3634 -1.0239 -0.0874 24 1 -0.3632 0.4363 0.9305 25 1 -0.3632 0.5877 -0.8430 26 1 3.1264 -0.7996 -1.2055 27 1 1.6054 -1.7199 -1.2950 28 1 1.9883 0.9872 -2.3966 29 1 2.5350 -1.6276 -3.5293 30 1 2.8144 1.3221 -4.5581 31 1 3.5765 -0.1713 -5.3266 32 1 1.2701 -1.1665 -5.6790 33 1 0.5080 0.3265 -4.9103 34 1 1.7268 -1.7649 1.2196 35 1 1.6281 -0.2435 2.1382 36 1 5.0440 0.7633 1.5128 37 1 3.4962 1.4177 0.9261 38 1 3.6759 0.9541 2.6352 39 1 4.0298 -3.2468 0.8227 40 1 4.0480 -3.7627 2.5259 41 1 2.5543 -3.1116 1.8088 42 1 6.2067 -3.8015 4.4337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227082161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:24 Heat of formation + Delta-G solvation = 6.713310 kcal Electronic energy + Delta-G solvation = -17922.840164 eV Core-core repulsion = 15323.743111 eV Total energy + Delta-G solvation = -2599.097053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.58550 -38.50247 -36.26422 -34.47865 -32.30160 -30.97772 -28.36487 -26.61757 -25.93506 -24.66228 -23.18683 -22.12040 -21.58136 -20.50803 -18.35053 -17.15647 -16.94764 -16.40148 -16.12106 -15.55333 -15.47052 -15.21417 -14.69405 -14.08519 -14.01090 -13.55505 -13.32728 -13.08760 -12.95884 -12.79936 -12.66249 -12.60604 -12.42120 -12.31760 -12.06517 -12.04241 -11.95518 -11.68641 -11.45703 -11.15648 -11.10876 -10.83286 -10.50073 -9.11333 -8.85761 -8.10880 -6.22614 1.41838 1.43478 1.50951 2.42061 2.94641 3.17112 3.21517 3.40920 3.96898 4.05814 4.14927 4.22871 4.25519 4.45365 4.56293 4.62814 4.72952 4.75723 4.81156 4.82764 4.87768 4.94507 4.97577 5.04873 5.07268 5.10468 5.16183 5.26949 5.29706 5.32064 5.45758 5.48163 5.55394 5.73947 5.81086 6.16463 6.26708 6.41687 6.49573 6.77556 6.92653 7.46644 8.94986 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.005498 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.171585 B = 5091.371253 C = 5634.274811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 H 0.069 0.931 4 C 0.083 3.917 5 N -0.654 5.654 6 C 0.005 3.995 7 C -0.201 4.201 8 C -0.164 4.164 9 C 0.053 3.947 10 N -0.538 5.538 11 C 0.043 3.957 12 C 0.216 3.784 13 H -0.041 1.041 14 C -0.119 4.119 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.959 3.041 20 H -0.285 1.285 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.342 0.658 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.002 0.998 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 6.883 -12.591 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.046 4.046 5 N -0.284 5.284 6 C -0.106 4.106 7 C -0.240 4.240 8 C -0.202 4.202 9 C -0.075 4.075 10 N -0.262 5.262 11 C -0.105 4.105 12 C 0.109 3.891 13 H -0.024 1.024 14 C -0.177 4.177 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.210 1.210 21 H -0.198 1.198 22 H -0.197 1.197 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.020 0.980 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.589 6.338 -12.925 16.763 hybrid contribution 1.719 0.093 1.340 2.181 sum -6.871 6.431 -11.585 14.926 Atomic orbital electron populations 1.21630 0.93488 1.01815 1.01631 1.21012 0.96343 0.98929 0.92727 0.91241 1.21749 0.97862 0.96553 0.88398 1.60302 1.62167 1.05508 1.00399 1.22458 1.03068 0.98346 0.86739 1.23439 0.97215 0.99684 1.03620 1.23130 0.95083 1.03525 0.98478 1.22247 0.88186 1.00571 0.96516 1.62072 1.07732 1.05277 1.51130 1.22181 1.00934 0.90060 0.97372 1.19038 0.93766 0.89265 0.87076 1.02391 1.21654 0.96846 0.99398 0.99796 1.21400 0.91918 1.19560 1.22765 0.92308 1.25715 1.02982 0.94986 0.95113 1.70022 1.36817 1.22943 1.26324 0.85599 0.80189 0.77877 0.77880 1.21009 1.19754 1.19682 0.93285 0.93086 0.91080 0.95314 0.92435 0.83866 0.88471 0.88301 0.88360 0.87967 0.88440 0.91573 0.96189 0.92566 0.90634 0.97967 0.95126 0.92339 0.95112 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.02 71.98 0.65 -2.39 16 2 C -0.07 -1.98 2.53 -10.79 -0.03 -2.01 16 3 H 0.07 1.88 6.52 -2.39 -0.02 1.87 16 4 C 0.08 2.39 4.86 86.30 0.42 2.81 16 5 N -0.65 -15.60 6.32 -491.57 -3.11 -18.71 16 6 C 0.00 0.11 6.31 44.92 0.28 0.39 16 7 C -0.20 -3.72 10.23 30.59 0.31 -3.41 16 8 C -0.16 -3.00 10.46 30.60 0.32 -2.68 16 9 C 0.05 1.90 4.24 86.31 0.37 2.26 16 10 N -0.54 -22.72 3.88 -901.47 -3.50 -26.22 16 11 C 0.04 1.66 9.04 127.69 1.15 2.82 16 12 C 0.22 11.11 2.06 44.17 0.09 11.20 16 13 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 14 C -0.12 -5.90 8.79 71.98 0.63 -5.27 16 15 C -0.52 -28.66 7.96 25.60 0.20 -28.46 16 16 H 0.06 3.22 6.40 -2.91 -0.02 3.20 16 17 C 0.01 0.59 5.30 84.65 0.45 1.03 16 18 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 19 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.56 7.89 -2.39 -0.02 1.54 16 26 H 0.03 0.98 7.56 -2.38 -0.02 0.96 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.34 7.55 8.52 -89.69 -0.76 6.79 16 29 H 0.10 2.38 7.90 -2.39 -0.02 2.36 16 30 H 0.10 1.71 8.09 -2.38 -0.02 1.69 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.45 5.63 -2.39 -0.01 2.44 16 35 H 0.02 0.72 8.06 -2.38 -0.02 0.70 16 36 H 0.06 2.33 6.35 -2.39 -0.02 2.32 16 37 H 0.08 2.39 6.41 -2.39 -0.02 2.37 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 3.21 6.07 -2.38 -0.01 3.19 16 41 H 0.03 1.34 6.10 -2.39 -0.01 1.33 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -59.07 326.28 0.73 -58.34 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.21 Total: 17.68 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.86 Total: -23.70 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -6.36 Total: -98.23 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -59.07 0.73 -58.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227082161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.053 kcal (2) G-P(sol) polarization free energy of solvation -59.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds