Wall clock time and date at job start Mon Mar 30 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47150 * 119.99355 * 2 1 3 5 5 H 1.07993 * 119.99453 * 119.99984 * 4 2 1 6 6 C 1.37870 * 120.00019 * 300.00291 * 4 2 1 7 7 N 1.31513 * 120.00252 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46961 * 60.00091 * 8 6 4 10 10 H 1.48496 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47390 * 300.00103 * 8 6 4 12 12 N 1.46893 * 109.46805 * 239.99620 * 2 1 3 13 13 C 1.46897 * 111.00207 * 85.00233 * 12 2 1 14 14 C 1.52993 * 109.47448 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.52304 * 59.87124 * 14 13 12 16 16 C 1.53099 * 109.52781 * 299.67477 * 14 13 12 17 17 C 1.53034 * 109.29509 * 182.43453 * 16 14 13 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 14 19 19 C 1.46898 * 110.99897 * 174.16738 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 21 21 C 1.53039 * 109.52227 * 61.74204 * 20 18 17 22 22 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46909 * 300.00278 * 1 2 3 24 24 H 1.08998 * 109.47423 * 60.00363 * 1 2 3 25 25 H 0.97007 * 119.99833 * 179.97438 * 7 6 4 26 26 H 1.00893 * 111.00374 * 321.03970 * 12 2 1 27 27 H 1.09001 * 109.47406 * 59.99333 * 13 12 2 28 28 H 1.09000 * 109.47034 * 300.00118 * 13 12 2 29 29 H 1.09009 * 109.47125 * 180.12831 * 15 14 13 30 30 H 1.09003 * 109.47171 * 300.12713 * 15 14 13 31 31 H 1.08999 * 109.47524 * 60.13001 * 15 14 13 32 32 H 1.09007 * 109.48839 * 62.49095 * 16 14 13 33 33 H 1.09009 * 109.50682 * 302.38881 * 16 14 13 34 34 H 1.09002 * 109.46271 * 299.17460 * 17 16 14 35 35 H 1.08994 * 109.46242 * 179.19760 * 17 16 14 36 36 H 1.09005 * 109.46873 * 60.00145 * 19 18 17 37 37 H 1.09004 * 109.47265 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.47576 * 299.99893 * 19 18 17 39 39 H 1.08993 * 109.46229 * 181.76227 * 20 18 17 40 40 H 1.09008 * 109.45803 * 301.73838 * 20 18 17 41 41 H 1.08994 * 109.50227 * 60.75933 * 21 20 18 42 42 H 1.08998 * 109.50241 * 180.83988 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.8064 -1.1205 4.0083 10 1 1.8270 -0.4195 5.2205 11 1 1.8259 -2.5199 4.0080 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5961 -0.5331 -3.5741 15 6 1.6496 -1.6917 -3.8944 16 6 3.9976 -1.0793 -3.2891 17 6 4.5307 -1.7814 -4.5401 18 7 4.5752 -0.8281 -5.6562 19 6 5.2108 -1.4287 -6.8365 20 6 3.2337 -0.3256 -5.9792 21 6 2.6620 0.4197 -4.7710 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7089 1.1616 3.4844 26 1 1.4496 -1.4980 -1.4098 27 1 2.7588 1.0461 -2.1183 28 1 1.0870 0.6162 -2.5525 29 1 2.0176 -2.2308 -4.7675 30 1 1.6034 -2.3694 -3.0419 31 1 0.6537 -1.3006 -4.1021 32 1 3.9499 -1.7910 -2.4648 33 1 4.6616 -0.2569 -3.0225 34 1 3.8739 -2.6122 -4.7980 35 1 5.5343 -2.1590 -4.3448 36 1 4.6430 -2.3055 -7.1482 37 1 5.2303 -0.7015 -7.6483 38 1 6.2301 -1.7250 -6.5892 39 1 3.2953 0.3538 -6.8293 40 1 2.5829 -1.1634 -6.2303 41 1 3.3049 1.2655 -4.5278 42 1 1.6604 0.7796 -5.0060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227340734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:00 Heat of formation + Delta-G solvation = -9.158442 kcal Electronic energy + Delta-G solvation = -18247.771633 eV Core-core repulsion = 15647.986330 eV Total energy + Delta-G solvation = -2599.785303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62369 -36.35530 -34.30388 -31.98824 -30.72459 -28.94867 -27.58467 -25.98603 -25.09347 -23.77804 -22.94625 -21.07022 -20.03868 -18.04999 -16.42709 -15.57172 -15.06019 -14.83427 -14.77523 -14.46750 -14.09666 -13.78037 -13.29082 -12.87677 -12.49495 -12.34080 -12.14130 -11.90238 -11.64773 -11.48136 -11.31878 -11.30314 -10.89879 -10.86644 -10.76892 -10.54774 -10.16775 -10.11404 -10.08198 -9.87513 -9.63352 -8.92547 -8.30984 -8.25424 -7.11556 -5.93345 -3.96374 3.37466 3.41240 3.44680 3.96934 4.47939 4.86847 4.92692 5.03767 5.16476 5.34158 5.37790 5.38355 5.45619 5.49585 5.62474 5.69418 5.72220 5.74485 5.78971 5.92378 6.05402 6.18159 6.25777 6.26292 6.33739 6.46140 6.53093 6.73850 6.76159 6.80561 6.89738 7.11320 7.14933 7.17123 7.45261 7.79095 7.94371 8.34800 8.62734 8.70246 9.10764 9.68838 11.13678 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041351 B = 0.005090 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.965511 B = 5499.724598 C = 5868.838595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.681 5.681 13 C 0.072 3.928 14 C -0.058 4.058 15 C -0.145 4.145 16 C -0.094 4.094 17 C 0.053 3.947 18 N -0.543 5.543 19 C 0.026 3.974 20 C 0.057 3.943 21 C -0.106 4.106 22 H 0.026 0.974 23 H 0.088 0.912 24 H 0.004 0.996 25 H 0.259 0.741 26 H 0.323 0.677 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -3.446 -16.464 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.311 5.311 13 C -0.058 4.058 14 C -0.059 4.059 15 C -0.202 4.202 16 C -0.131 4.131 17 C -0.075 4.075 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.145 4.145 22 H 0.045 0.955 23 H 0.106 0.894 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.604 -2.846 -15.994 16.885 hybrid contribution -1.245 -0.958 0.364 1.613 sum 3.359 -3.804 -15.631 16.434 Atomic orbital electron populations 1.22420 1.00924 0.99015 1.00359 1.19151 0.89427 0.94421 0.86704 0.95017 1.21129 1.30039 1.12324 0.89662 0.92070 1.24949 0.95407 0.95219 0.99000 1.69880 1.37428 1.23238 1.23328 0.86584 0.79177 0.79570 0.82155 1.20318 1.21530 1.20448 1.60820 1.57857 1.09046 1.03416 1.21891 0.97941 0.95550 0.90399 1.20594 0.95703 0.95121 0.94454 1.21963 0.98601 0.98421 1.01210 1.21493 0.94871 1.00940 0.95834 1.22233 1.00340 0.93204 0.91708 1.61943 1.20501 1.37717 1.06630 1.22336 0.99249 0.97737 0.92969 1.22097 0.88689 0.98270 0.97986 1.21629 1.00286 0.98437 0.94119 0.95515 0.89382 0.97734 0.93104 0.85956 0.91853 0.96657 0.93285 0.91859 0.93306 0.89814 0.91468 0.94975 0.91276 0.96111 0.91744 0.91545 0.91402 0.94904 0.91116 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.34 2.57 -68.87 -0.18 5.16 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.72 8.84 -34.44 -0.30 -14.03 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.27 5.51 -107.96 -0.59 -14.86 16 13 C 0.07 1.30 4.45 -3.83 -0.02 1.28 16 14 C -0.06 -0.84 0.59 -154.40 -0.09 -0.93 16 15 C -0.14 -1.95 7.57 37.15 0.28 -1.67 16 16 C -0.09 -1.37 4.69 -26.66 -0.13 -1.50 16 17 C 0.05 0.66 5.22 -3.84 -0.02 0.64 16 18 N -0.54 -6.57 4.91 -242.95 -1.19 -7.77 16 19 C 0.03 0.25 9.59 60.06 0.58 0.82 16 20 C 0.06 0.66 5.22 -3.83 -0.02 0.64 16 21 C -0.11 -1.36 4.88 -26.65 -0.13 -1.49 16 22 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.32 6.48 6.51 -39.30 -0.26 6.22 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 29 H 0.05 0.60 4.93 -51.92 -0.26 0.35 16 30 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 33 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 35 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.03 0.38 6.52 -51.92 -0.34 0.04 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -28.27 313.42 -8.85 -37.13 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.61 Total: 2.89 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.21 Total: -13.40 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.16 Total: -48.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.27 -8.85 -37.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227340734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds