Wall clock time and date at job start Mon Mar 30 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47150 * 119.99355 * 2 1 3 5 5 H 1.07993 * 119.99453 * 119.99984 * 4 2 1 6 6 C 1.37870 * 120.00019 * 300.00291 * 4 2 1 7 7 N 1.31513 * 120.00252 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46961 * 60.00091 * 8 6 4 10 10 H 1.48496 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47390 * 300.00103 * 8 6 4 12 12 N 1.46893 * 109.46805 * 239.99620 * 2 1 3 13 13 C 1.46897 * 111.00207 * 85.00233 * 12 2 1 14 14 C 1.52993 * 109.47448 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.52304 * 59.87124 * 14 13 12 16 16 C 1.53099 * 109.52781 * 299.67477 * 14 13 12 17 17 C 1.53034 * 109.29509 * 182.43453 * 16 14 13 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 14 19 19 C 1.46898 * 110.99897 * 174.16738 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 21 21 C 1.53039 * 109.52227 * 61.74204 * 20 18 17 22 22 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46909 * 300.00278 * 1 2 3 24 24 H 1.08998 * 109.47423 * 60.00363 * 1 2 3 25 25 H 0.97007 * 119.99833 * 179.97438 * 7 6 4 26 26 H 1.00893 * 111.00374 * 321.03970 * 12 2 1 27 27 H 1.09001 * 109.47406 * 59.99333 * 13 12 2 28 28 H 1.09000 * 109.47034 * 300.00118 * 13 12 2 29 29 H 1.09009 * 109.47125 * 180.12831 * 15 14 13 30 30 H 1.09003 * 109.47171 * 300.12713 * 15 14 13 31 31 H 1.08999 * 109.47524 * 60.13001 * 15 14 13 32 32 H 1.09007 * 109.48839 * 62.49095 * 16 14 13 33 33 H 1.09009 * 109.50682 * 302.38881 * 16 14 13 34 34 H 1.09002 * 109.46271 * 299.17460 * 17 16 14 35 35 H 1.08994 * 109.46242 * 179.19760 * 17 16 14 36 36 H 1.09005 * 109.46873 * 60.00145 * 19 18 17 37 37 H 1.09004 * 109.47265 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.47576 * 299.99893 * 19 18 17 39 39 H 1.08993 * 109.46229 * 181.76227 * 20 18 17 40 40 H 1.09008 * 109.45803 * 301.73838 * 20 18 17 41 41 H 1.08994 * 109.50227 * 60.75933 * 21 20 18 42 42 H 1.08998 * 109.50241 * 180.83988 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.8064 -1.1205 4.0083 10 1 1.8270 -0.4195 5.2205 11 1 1.8259 -2.5199 4.0080 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5961 -0.5331 -3.5741 15 6 1.6496 -1.6917 -3.8944 16 6 3.9976 -1.0793 -3.2891 17 6 4.5307 -1.7814 -4.5401 18 7 4.5752 -0.8281 -5.6562 19 6 5.2108 -1.4287 -6.8365 20 6 3.2337 -0.3256 -5.9792 21 6 2.6620 0.4197 -4.7710 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7089 1.1616 3.4844 26 1 1.4496 -1.4980 -1.4098 27 1 2.7588 1.0461 -2.1183 28 1 1.0870 0.6162 -2.5525 29 1 2.0176 -2.2308 -4.7675 30 1 1.6034 -2.3694 -3.0419 31 1 0.6537 -1.3006 -4.1021 32 1 3.9499 -1.7910 -2.4648 33 1 4.6616 -0.2569 -3.0225 34 1 3.8739 -2.6122 -4.7980 35 1 5.5343 -2.1590 -4.3448 36 1 4.6430 -2.3055 -7.1482 37 1 5.2303 -0.7015 -7.6483 38 1 6.2301 -1.7250 -6.5892 39 1 3.2953 0.3538 -6.8293 40 1 2.5829 -1.1634 -6.2303 41 1 3.3049 1.2655 -4.5278 42 1 1.6604 0.7796 -5.0060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227340734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:00 Heat of formation + Delta-G solvation = -27.423812 kcal Electronic energy + Delta-G solvation = -18248.563679 eV Core-core repulsion = 15647.986330 eV Total energy + Delta-G solvation = -2600.577349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.73407 -37.88837 -35.81175 -33.87247 -31.76623 -30.50065 -28.84662 -27.30589 -27.09938 -25.01264 -24.00817 -22.36775 -21.85746 -19.20684 -18.36810 -16.97706 -16.57058 -16.10543 -15.97239 -15.68274 -15.45862 -15.14976 -14.65101 -14.46642 -14.06197 -13.55865 -13.36083 -13.25417 -12.90705 -12.87800 -12.76031 -12.66418 -12.49328 -12.44537 -12.24012 -12.10974 -11.94771 -11.92412 -11.32684 -11.22596 -11.04154 -10.83870 -10.46361 -9.15403 -8.87429 -8.07502 -6.18698 1.44076 1.46041 1.53644 2.45561 3.08389 3.20664 3.60818 3.83736 3.91983 4.03569 4.31958 4.37400 4.41452 4.51045 4.52850 4.67504 4.71469 4.74456 4.78621 4.82175 4.87541 4.90359 4.95526 5.03896 5.05480 5.11699 5.14615 5.17322 5.23262 5.34279 5.45016 5.57638 5.62100 5.70961 5.84105 6.20789 6.24404 6.30072 6.69321 6.88456 6.98452 7.51451 8.97914 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041351 B = 0.005090 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.965511 B = 5499.724598 C = 5868.838595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.076 3.924 14 C -0.052 4.052 15 C -0.139 4.139 16 C -0.090 4.090 17 C 0.060 3.940 18 N -0.559 5.559 19 C 0.026 3.974 20 C 0.061 3.939 21 C -0.103 4.103 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.022 0.978 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.044 0.956 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 -4.562 -17.904 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.310 5.310 13 C -0.054 4.054 14 C -0.052 4.052 15 C -0.196 4.196 16 C -0.128 4.128 17 C -0.067 4.067 18 N -0.284 5.284 19 C -0.122 4.122 20 C -0.067 4.067 21 C -0.142 4.142 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.820 -3.970 -17.460 18.543 hybrid contribution -1.292 -0.566 0.777 1.610 sum 3.529 -4.536 -16.683 17.645 Atomic orbital electron populations 1.22221 1.00157 0.99123 0.99879 1.18924 0.89910 0.92585 0.87993 0.98550 1.21427 1.30280 1.12399 0.91033 0.92673 1.25729 0.95508 0.95886 1.01926 1.70014 1.38175 1.24341 1.23954 0.85572 0.78603 0.78694 0.78474 1.19982 1.21075 1.19562 1.60675 1.57594 1.09458 1.03277 1.21907 0.97578 0.95060 0.90843 1.20526 0.95636 0.95629 0.93430 1.21903 0.98568 0.97680 1.01442 1.21392 0.94819 0.99940 0.96646 1.22103 1.00630 0.93091 0.90905 1.61920 1.21007 1.38014 1.07470 1.22383 0.99335 0.98248 0.92225 1.22087 0.88480 0.98605 0.97499 1.21593 1.00862 0.97772 0.93939 0.94948 0.92090 0.95878 0.93085 0.85106 0.93758 0.96760 0.91564 0.92942 0.92759 0.91709 0.93417 0.94323 0.90724 0.95406 0.90538 0.91064 0.89773 0.94200 0.92240 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 8.94 71.98 0.64 -6.94 16 2 C 0.21 11.12 2.57 44.17 0.11 11.23 16 3 H 0.00 -0.20 7.80 -2.38 -0.02 -0.22 16 4 C -0.51 -28.96 8.84 25.60 0.23 -28.73 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -54.28 11.32 21.44 0.24 -54.04 16 8 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.68 -28.83 5.51 -495.46 -2.73 -31.55 16 13 C 0.08 2.75 4.45 86.30 0.38 3.13 16 14 C -0.05 -1.45 0.59 -52.11 -0.03 -1.48 16 15 C -0.14 -3.48 7.57 71.98 0.55 -2.93 16 16 C -0.09 -2.62 4.69 30.64 0.14 -2.48 16 17 C 0.06 1.42 5.22 86.32 0.45 1.87 16 18 N -0.56 -12.24 4.91 -922.57 -4.53 -16.77 16 19 C 0.03 0.43 9.59 127.69 1.22 1.65 16 20 C 0.06 1.24 5.22 86.32 0.45 1.69 16 21 C -0.10 -2.48 4.88 30.65 0.15 -2.33 16 22 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 23 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 24 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.33 13.20 6.51 -89.70 -0.58 12.62 16 27 H 0.04 1.76 8.06 -2.39 -0.02 1.74 16 28 H 0.01 0.52 7.44 -2.39 -0.02 0.50 16 29 H 0.07 1.45 4.93 -2.38 -0.01 1.43 16 30 H 0.05 1.43 6.57 -2.39 -0.02 1.41 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 2.11 7.70 -2.38 -0.02 2.09 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.04 0.86 6.51 -2.39 -0.02 0.85 16 35 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 36 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 40 H 0.04 0.77 6.52 -2.38 -0.02 0.75 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -60.40 313.42 0.14 -60.26 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.38 Total: 19.94 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.75 Total: -24.46 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -7.02 Total: -102.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -60.40 0.14 -60.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227340734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.838 kcal (2) G-P(sol) polarization free energy of solvation -60.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds