Wall clock time and date at job start Mon Mar 30 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47235 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99360 * 2 1 3 5 5 H 1.07992 * 120.00538 * 240.00615 * 4 2 1 6 6 C 1.37884 * 119.99609 * 59.99734 * 4 2 1 7 7 N 1.31511 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46775 * 90.00589 * 8 6 4 10 10 H 1.48495 * 109.47217 * 210.00537 * 8 6 4 11 11 H 1.48499 * 109.47430 * 330.00988 * 8 6 4 12 12 N 1.46904 * 109.47037 * 120.00152 * 2 1 3 13 13 C 1.46900 * 110.99660 * 274.99525 * 12 2 1 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.52396 * 300.12887 * 14 13 12 16 16 C 1.53123 * 109.57495 * 60.29820 * 14 13 12 17 17 C 1.53034 * 109.27992 * 177.60435 * 16 14 13 18 18 N 1.46847 * 109.51345 * 300.80438 * 17 16 14 19 19 C 1.46895 * 110.99982 * 185.84805 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 18 17 16 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 18 17 22 22 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46903 * 300.00502 * 1 2 3 24 24 H 1.09002 * 109.47240 * 60.00003 * 1 2 3 25 25 H 0.96993 * 120.00209 * 179.97438 * 7 6 4 26 26 H 1.00899 * 111.00606 * 38.94804 * 12 2 1 27 27 H 1.09002 * 109.47149 * 60.00105 * 13 12 2 28 28 H 1.09000 * 109.47389 * 300.00153 * 13 12 2 29 29 H 1.09007 * 109.46974 * 299.87363 * 15 14 13 30 30 H 1.08998 * 109.47153 * 59.86800 * 15 14 13 31 31 H 1.08998 * 109.47206 * 179.87543 * 15 14 13 32 32 H 1.08997 * 109.51083 * 57.65029 * 16 14 13 33 33 H 1.08998 * 109.48980 * 297.53960 * 16 14 13 34 34 H 1.09002 * 109.46271 * 180.79158 * 17 16 14 35 35 H 1.08994 * 109.46242 * 60.81457 * 17 16 14 36 36 H 1.09000 * 109.47319 * 59.99571 * 19 18 17 37 37 H 1.09002 * 109.47520 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47227 * 299.99524 * 19 18 17 39 39 H 1.08993 * 109.46313 * 58.27251 * 20 18 17 40 40 H 1.09000 * 109.46480 * 178.25361 * 20 18 17 41 41 H 1.08997 * 109.50758 * 179.11703 * 21 20 18 42 42 H 1.08998 * 109.50897 * 299.20258 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4122 10 1 2.4872 -0.1406 -5.1120 11 1 3.6307 -1.7570 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 1.6498 -1.6914 3.8947 16 6 3.9978 -1.0802 3.2901 17 6 4.5291 -1.7826 4.5416 18 7 4.5737 -0.8291 5.6576 19 6 5.2079 -1.4301 6.8384 20 6 3.2324 -0.3256 5.9797 21 6 2.6622 0.4202 4.7710 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.7094 1.1615 -3.4844 26 1 1.4496 -1.4979 1.4102 27 1 1.0871 0.6164 2.5525 28 1 2.7589 1.0462 2.1182 29 1 0.6538 -1.3001 4.1023 30 1 1.6034 -2.3691 3.0423 31 1 2.0177 -2.2303 4.7678 32 1 4.6625 -0.2584 3.0240 33 1 3.9501 -1.7919 2.4660 34 1 5.5326 -2.1613 4.3472 35 1 3.8713 -2.6126 4.7992 36 1 6.2272 -1.7273 6.5917 37 1 5.2283 -0.7026 7.6498 38 1 4.6393 -2.3063 7.1499 39 1 2.5808 -1.1625 6.2306 40 1 3.2941 0.3542 6.8296 41 1 1.6604 0.7803 5.0049 42 1 3.3056 1.2659 4.5284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227340740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:02 Heat of formation + Delta-G solvation = -9.167507 kcal Electronic energy + Delta-G solvation = -18247.793484 eV Core-core repulsion = 15648.007787 eV Total energy + Delta-G solvation = -2599.785697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62398 -36.35506 -34.30407 -31.98917 -30.72515 -28.94939 -27.58408 -25.98649 -25.09526 -23.77879 -22.94610 -21.07068 -20.04031 -18.04977 -16.42926 -15.57345 -15.06050 -14.83549 -14.77506 -14.46872 -14.09492 -13.77953 -13.29114 -12.87703 -12.49824 -12.34038 -12.14311 -11.90143 -11.64993 -11.48116 -11.31930 -11.30601 -10.92540 -10.86604 -10.74310 -10.53793 -10.16270 -10.12237 -10.08297 -9.87594 -9.63532 -8.91531 -8.31618 -8.25416 -7.11578 -5.93630 -3.96525 3.35349 3.41688 3.46471 3.96953 4.47913 4.86841 4.92670 5.03741 5.16415 5.34199 5.37702 5.38277 5.45621 5.49549 5.62456 5.69389 5.72231 5.74525 5.78936 5.92387 6.05363 6.18136 6.25767 6.26289 6.33747 6.46121 6.53045 6.73740 6.76127 6.80556 6.89677 7.11344 7.14937 7.17053 7.45217 7.78930 7.94524 8.34640 8.62623 8.70114 9.10983 9.68715 11.13468 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041361 B = 0.005089 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.801727 B = 5500.306301 C = 5869.390231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.072 3.928 14 C -0.058 4.058 15 C -0.145 4.145 16 C -0.094 4.094 17 C 0.053 3.947 18 N -0.543 5.543 19 C 0.026 3.974 20 C 0.057 3.943 21 C -0.106 4.106 22 H 0.026 0.974 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.323 0.677 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -3.454 16.480 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.058 4.058 14 C -0.059 4.059 15 C -0.202 4.202 16 C -0.131 4.131 17 C -0.075 4.075 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.145 4.145 22 H 0.045 0.955 23 H 0.023 0.977 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.624 -2.855 16.013 16.910 hybrid contribution -1.264 -0.952 -0.370 1.625 sum 3.360 -3.806 15.643 16.447 Atomic orbital electron populations 1.22422 1.00924 0.99008 1.00361 1.19157 0.89428 0.94432 0.86720 0.95007 1.21170 1.29974 1.12288 0.89647 0.92013 1.24954 0.95426 0.95210 0.99016 1.69883 1.37530 1.23228 1.23226 0.86528 0.79223 0.79221 0.82582 1.20933 1.21433 1.19891 1.60829 1.57844 1.09044 1.03414 1.21891 0.97939 0.95552 0.90400 1.20601 0.95702 0.95115 0.94455 1.21966 0.98601 0.98424 1.01211 1.21494 0.94881 1.00932 0.95831 1.22233 1.00340 0.93205 0.91706 1.61936 1.20560 1.37676 1.06623 1.22334 0.99255 0.97736 0.92965 1.22093 0.88693 0.98263 0.97988 1.21630 1.00291 0.98432 0.94118 0.95519 0.97740 0.89378 0.93159 0.85960 0.96654 0.91852 0.93311 0.91859 0.93280 0.91469 0.89816 0.91276 0.94971 0.91552 0.91743 0.96105 0.94902 0.91404 0.91900 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.33 2.57 -68.86 -0.18 5.15 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.70 8.84 -34.44 -0.30 -14.00 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.26 5.51 -107.95 -0.60 -14.86 16 13 C 0.07 1.30 4.45 -3.83 -0.02 1.28 16 14 C -0.06 -0.84 0.59 -154.38 -0.09 -0.93 16 15 C -0.14 -1.95 7.57 37.16 0.28 -1.67 16 16 C -0.09 -1.38 4.69 -26.65 -0.13 -1.50 16 17 C 0.05 0.66 5.22 -3.84 -0.02 0.64 16 18 N -0.54 -6.57 4.91 -242.97 -1.19 -7.77 16 19 C 0.03 0.25 9.59 60.06 0.58 0.82 16 20 C 0.06 0.66 5.22 -3.83 -0.02 0.64 16 21 C -0.11 -1.36 4.88 -26.64 -0.13 -1.49 16 22 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.32 6.48 6.51 -39.29 -0.26 6.22 16 27 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 28 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 31 H 0.05 0.60 4.92 -51.93 -0.26 0.35 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.35 7.70 -51.93 -0.40 0.96 16 34 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.03 0.38 6.51 -51.93 -0.34 0.04 16 40 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -28.30 313.41 -8.85 -37.16 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.61 Total: 2.86 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.21 Total: -13.40 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -1.16 Total: -48.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.30 -8.85 -37.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227340740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.988 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds