Wall clock time and date at job start Mon Mar 30 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47235 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99360 * 2 1 3 5 5 H 1.07992 * 120.00538 * 240.00615 * 4 2 1 6 6 C 1.37884 * 119.99609 * 59.99734 * 4 2 1 7 7 N 1.31511 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46775 * 90.00589 * 8 6 4 10 10 H 1.48495 * 109.47217 * 210.00537 * 8 6 4 11 11 H 1.48499 * 109.47430 * 330.00988 * 8 6 4 12 12 N 1.46904 * 109.47037 * 120.00152 * 2 1 3 13 13 C 1.46900 * 110.99660 * 274.99525 * 12 2 1 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.52396 * 300.12887 * 14 13 12 16 16 C 1.53123 * 109.57495 * 60.29820 * 14 13 12 17 17 C 1.53034 * 109.27992 * 177.60435 * 16 14 13 18 18 N 1.46847 * 109.51345 * 300.80438 * 17 16 14 19 19 C 1.46895 * 110.99982 * 185.84805 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 18 17 16 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 18 17 22 22 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46903 * 300.00502 * 1 2 3 24 24 H 1.09002 * 109.47240 * 60.00003 * 1 2 3 25 25 H 0.96993 * 120.00209 * 179.97438 * 7 6 4 26 26 H 1.00899 * 111.00606 * 38.94804 * 12 2 1 27 27 H 1.09002 * 109.47149 * 60.00105 * 13 12 2 28 28 H 1.09000 * 109.47389 * 300.00153 * 13 12 2 29 29 H 1.09007 * 109.46974 * 299.87363 * 15 14 13 30 30 H 1.08998 * 109.47153 * 59.86800 * 15 14 13 31 31 H 1.08998 * 109.47206 * 179.87543 * 15 14 13 32 32 H 1.08997 * 109.51083 * 57.65029 * 16 14 13 33 33 H 1.08998 * 109.48980 * 297.53960 * 16 14 13 34 34 H 1.09002 * 109.46271 * 180.79158 * 17 16 14 35 35 H 1.08994 * 109.46242 * 60.81457 * 17 16 14 36 36 H 1.09000 * 109.47319 * 59.99571 * 19 18 17 37 37 H 1.09002 * 109.47520 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47227 * 299.99524 * 19 18 17 39 39 H 1.08993 * 109.46313 * 58.27251 * 20 18 17 40 40 H 1.09000 * 109.46480 * 178.25361 * 20 18 17 41 41 H 1.08997 * 109.50758 * 179.11703 * 21 20 18 42 42 H 1.08998 * 109.50897 * 299.20258 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4122 10 1 2.4872 -0.1406 -5.1120 11 1 3.6307 -1.7570 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 1.6498 -1.6914 3.8947 16 6 3.9978 -1.0802 3.2901 17 6 4.5291 -1.7826 4.5416 18 7 4.5737 -0.8291 5.6576 19 6 5.2079 -1.4301 6.8384 20 6 3.2324 -0.3256 5.9797 21 6 2.6622 0.4202 4.7710 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.7094 1.1615 -3.4844 26 1 1.4496 -1.4979 1.4102 27 1 1.0871 0.6164 2.5525 28 1 2.7589 1.0462 2.1182 29 1 0.6538 -1.3001 4.1023 30 1 1.6034 -2.3691 3.0423 31 1 2.0177 -2.2303 4.7678 32 1 4.6625 -0.2584 3.0240 33 1 3.9501 -1.7919 2.4660 34 1 5.5326 -2.1613 4.3472 35 1 3.8713 -2.6126 4.7992 36 1 6.2272 -1.7273 6.5917 37 1 5.2283 -0.7026 7.6498 38 1 4.6393 -2.3063 7.1499 39 1 2.5808 -1.1625 6.2306 40 1 3.2941 0.3542 6.8296 41 1 1.6604 0.7803 5.0049 42 1 3.3056 1.2659 4.5284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227340740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:01 Heat of formation + Delta-G solvation = -27.461151 kcal Electronic energy + Delta-G solvation = -18248.586756 eV Core-core repulsion = 15648.007787 eV Total energy + Delta-G solvation = -2600.578968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73401 -37.88838 -35.81179 -33.87342 -31.76661 -30.50184 -28.84529 -27.30690 -27.10067 -25.01322 -24.00805 -22.36841 -21.85841 -19.20666 -18.37168 -16.97968 -16.56892 -16.10521 -15.97346 -15.68302 -15.45836 -15.14916 -14.65159 -14.47048 -14.06238 -13.56241 -13.36257 -13.25380 -12.91094 -12.88511 -12.77303 -12.63572 -12.49242 -12.44135 -12.23559 -12.12106 -11.94973 -11.92792 -11.32578 -11.22022 -11.04106 -10.83382 -10.47005 -9.15376 -8.87428 -8.07792 -6.18852 1.43555 1.44394 1.55551 2.45459 3.08411 3.20445 3.60831 3.83688 3.91987 4.03582 4.31948 4.37395 4.41466 4.51053 4.52875 4.67485 4.71431 4.74454 4.78608 4.82148 4.87516 4.90403 4.95530 5.03899 5.05530 5.11648 5.14632 5.17333 5.23289 5.34243 5.45046 5.57649 5.62097 5.70954 5.84148 6.20812 6.24443 6.30007 6.69203 6.88512 6.98526 7.51324 8.97859 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041361 B = 0.005089 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.801727 B = 5500.306301 C = 5869.390231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.076 3.924 14 C -0.052 4.052 15 C -0.139 4.139 16 C -0.090 4.090 17 C 0.060 3.940 18 N -0.559 5.559 19 C 0.026 3.974 20 C 0.061 3.939 21 C -0.103 4.103 22 H 0.031 0.969 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.027 0.973 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -4.554 17.916 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.054 4.054 14 C -0.052 4.052 15 C -0.196 4.196 16 C -0.128 4.128 17 C -0.067 4.067 18 N -0.284 5.284 19 C -0.122 4.122 20 C -0.067 4.067 21 C -0.142 4.142 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.830 -3.964 17.474 18.557 hybrid contribution -1.308 -0.564 -0.783 1.626 sum 3.521 -4.528 16.691 17.649 Atomic orbital electron populations 1.22223 1.00156 0.99121 0.99880 1.18928 0.89910 0.92598 0.88001 0.98528 1.21457 1.30211 1.12343 0.91026 0.92682 1.25732 0.95530 0.95877 1.01934 1.70014 1.38265 1.24327 1.23898 0.85514 0.78796 0.78186 0.78839 1.20067 1.21086 1.19516 1.60685 1.57583 1.09459 1.03277 1.21907 0.97579 0.95061 0.90842 1.20532 0.95633 0.95625 0.93433 1.21905 0.98569 0.97683 1.01443 1.21393 0.94831 0.99935 0.96641 1.22103 1.00631 0.93091 0.90902 1.61914 1.21064 1.37970 1.07462 1.22381 0.99342 0.98247 0.92219 1.22084 0.88486 0.98597 0.97502 1.21595 1.00865 0.97768 0.93937 0.94946 0.95882 0.92088 0.93088 0.85107 0.96754 0.93753 0.92763 0.92941 0.91561 0.93412 0.91720 0.90726 0.94321 0.91071 0.90536 0.95400 0.94199 0.89774 0.90899 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 8.94 71.98 0.64 -6.94 16 2 C 0.21 11.10 2.57 44.17 0.11 11.21 16 3 H 0.00 -0.19 7.80 -2.39 -0.02 -0.21 16 4 C -0.51 -28.90 8.84 25.60 0.23 -28.68 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -28.83 5.51 -495.45 -2.73 -31.56 16 13 C 0.08 2.75 4.45 86.30 0.38 3.13 16 14 C -0.05 -1.45 0.59 -52.10 -0.03 -1.48 16 15 C -0.14 -3.48 7.57 71.98 0.54 -2.93 16 16 C -0.09 -2.62 4.69 30.65 0.14 -2.48 16 17 C 0.06 1.42 5.22 86.32 0.45 1.87 16 18 N -0.56 -12.24 4.91 -922.62 -4.53 -16.77 16 19 C 0.03 0.43 9.59 127.69 1.22 1.65 16 20 C 0.06 1.24 5.22 86.33 0.45 1.69 16 21 C -0.10 -2.48 4.88 30.65 0.15 -2.33 16 22 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 23 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 24 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.33 13.20 6.51 -89.69 -0.58 12.61 16 27 H 0.01 0.52 7.44 -2.39 -0.02 0.51 16 28 H 0.04 1.76 8.06 -2.39 -0.02 1.74 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.05 1.43 6.57 -2.39 -0.02 1.41 16 31 H 0.07 1.45 4.92 -2.39 -0.01 1.43 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 2.11 7.70 -2.39 -0.02 2.09 16 34 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 35 H 0.04 0.86 6.51 -2.39 -0.02 0.85 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.03 0.42 8.14 -2.39 -0.02 0.41 16 39 H 0.04 0.77 6.51 -2.39 -0.02 0.75 16 40 H 0.08 1.46 8.09 -2.39 -0.02 1.45 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.46 313.41 0.14 -60.32 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.38 Total: 19.84 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.75 Total: -24.44 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -7.02 Total: -102.35 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.46 0.14 -60.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227340740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.856 kcal (2) G-P(sol) polarization free energy of solvation -60.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds