Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 N 1.46898 * 109.47210 * 120.00146 * 2 1 3 5 5 C 1.46897 * 111.00298 * 291.34574 * 4 2 1 6 6 C 1.52999 * 109.47397 * 150.54470 * 5 4 2 7 7 H 1.08997 * 110.06627 * 64.81508 * 6 5 4 8 8 C 1.53990 * 109.91863 * 186.02250 * 6 5 4 9 9 C 1.54595 * 105.14043 * 120.57816 * 8 6 5 10 10 C 1.54934 * 102.92166 * 21.95465 * 9 8 6 11 11 N 1.47902 * 109.91393 * 303.61387 * 6 5 4 12 12 C 1.46905 * 110.99722 * 167.39171 * 4 2 1 13 13 H 1.09000 * 109.47590 * 59.55036 * 12 4 2 14 14 C 1.53005 * 109.46790 * 179.55127 * 12 4 2 15 15 C 1.50702 * 109.47201 * 299.54423 * 12 4 2 16 16 H 1.08004 * 119.99652 * 0.02562 * 15 12 4 17 17 C 1.37875 * 119.99979 * 179.97438 * 15 12 4 18 18 N 1.31513 * 120.00070 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00111 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47439 * 89.99280 * 19 17 15 21 21 H 1.48498 * 109.47173 * 209.99638 * 19 17 15 22 22 H 1.48506 * 109.47014 * 329.99371 * 19 17 15 23 23 H 1.08996 * 109.47727 * 306.50999 * 1 2 3 24 24 H 1.09001 * 109.47702 * 66.51190 * 1 2 3 25 25 H 1.08998 * 109.47168 * 186.50786 * 1 2 3 26 26 H 1.09001 * 109.47077 * 240.00737 * 2 1 3 27 27 H 1.08999 * 109.46754 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47139 * 300.00239 * 3 2 1 29 29 H 1.09001 * 109.46640 * 60.00469 * 3 2 1 30 30 H 1.08998 * 109.47175 * 30.53798 * 5 4 2 31 31 H 1.09000 * 109.46816 * 270.54655 * 5 4 2 32 32 H 1.08996 * 110.30594 * 239.49677 * 8 6 5 33 33 H 1.09009 * 110.30687 * 1.55868 * 8 6 5 34 34 H 1.08999 * 110.72396 * 140.31932 * 9 8 6 35 35 H 1.09008 * 110.71786 * 263.42022 * 9 8 6 36 36 H 1.08994 * 110.66346 * 81.02289 * 10 9 8 37 37 H 1.08996 * 110.66429 * 203.98463 * 10 9 8 38 38 H 1.00903 * 111.00274 * 335.82407 * 11 6 5 39 39 H 1.08999 * 109.46946 * 289.71403 * 14 12 4 40 40 H 1.08998 * 109.47454 * 49.71510 * 14 12 4 41 41 H 1.09000 * 109.46990 * 169.71908 * 14 12 4 42 42 H 0.96997 * 120.00561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.7245 0.0822 2.4121 6 6 1.5445 -0.8710 3.5952 7 1 2.4815 -1.3865 3.8060 8 6 1.0873 -0.0846 4.8377 9 6 -0.2725 -0.7060 5.2310 10 6 -0.2141 -2.1095 4.5774 11 7 0.4845 -1.8567 3.2912 12 6 3.4570 -0.9768 1.0931 13 1 4.0045 -0.0420 0.9734 14 6 3.9316 -1.6868 2.3626 15 6 3.7070 -1.8620 -0.1007 16 1 2.8808 -2.1810 -0.7189 17 6 4.9906 -2.2636 -0.4043 18 7 5.2089 -3.0356 -1.4464 19 14 6.4195 -1.7112 0.6645 20 1 6.6339 -2.6981 1.7531 21 1 7.6481 -1.6130 -0.1637 22 1 6.1124 -0.3831 1.2538 23 1 -0.3634 0.6114 0.8259 24 1 -0.3634 0.4096 -0.9425 25 1 -0.3633 -1.0210 0.1165 26 1 1.8933 -0.5137 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 0.8087 0.6544 2.2638 31 1 2.5497 0.7642 2.6172 32 1 1.8068 -0.2052 5.6475 33 1 0.9664 0.9709 4.5939 34 1 -0.3601 -0.7883 6.3144 35 1 -1.0965 -0.1211 4.8222 36 1 0.3588 -2.7990 5.1973 37 1 -1.2187 -2.4948 4.4032 38 1 -0.1543 -1.4984 2.5971 39 1 3.9218 -0.9851 3.1966 40 1 3.2662 -2.5217 2.5825 41 1 4.9450 -2.0594 2.2133 42 1 6.1118 -3.3185 -1.6598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232857569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = 17.567125 kcal Electronic energy + Delta-G solvation = -19032.452181 eV Core-core repulsion = 16433.825786 eV Total energy + Delta-G solvation = -2598.626396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18756 -37.17512 -33.35915 -31.85195 -30.09495 -29.63679 -27.91885 -26.63203 -25.31886 -23.73697 -21.34207 -20.62257 -19.95279 -18.65362 -16.55995 -15.95763 -15.50564 -14.90130 -14.52572 -14.15156 -13.84355 -13.46944 -13.34022 -12.91173 -12.46664 -12.22497 -12.07867 -11.95795 -11.74472 -11.40361 -11.26338 -10.99016 -10.87975 -10.81285 -10.61850 -10.54315 -10.32848 -10.25310 -10.04635 -9.75994 -9.26811 -8.88797 -8.49218 -8.07881 -7.19197 -5.99835 -3.96608 3.30800 3.40241 3.42246 4.43195 4.45530 4.82375 4.91904 4.98982 5.27055 5.31991 5.43517 5.53876 5.65427 5.69070 5.74798 5.80895 5.89192 5.96786 6.01694 6.03344 6.07851 6.11844 6.24697 6.28203 6.30938 6.36313 6.51041 6.56119 6.61958 6.69778 6.75617 6.97004 7.06818 7.26605 7.40776 7.73082 7.86203 8.07760 8.22277 8.74991 9.08526 9.63053 11.13175 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.008640 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.363228 B = 3239.881937 C = 3769.730979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 C -0.180 4.180 4 N -0.503 5.503 5 C 0.049 3.951 6 C 0.063 3.937 7 H 0.104 0.896 8 C -0.151 4.151 9 C -0.157 4.157 10 C 0.038 3.962 11 N -0.644 5.644 12 C 0.185 3.815 13 H -0.004 1.004 14 C -0.150 4.150 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.270 1.270 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.338 0.662 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 7.241 10.302 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.239 4.239 4 N -0.226 5.226 5 C -0.081 4.081 6 C -0.047 4.047 7 H 0.122 0.878 8 C -0.191 4.191 9 C -0.196 4.196 10 C -0.092 4.092 11 N -0.272 5.272 12 C 0.078 3.922 13 H 0.014 0.986 14 C -0.207 4.207 15 C -0.535 4.535 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.196 1.196 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.136 6.073 10.184 14.969 hybrid contribution 0.871 1.966 0.753 2.278 sum -8.265 8.040 10.937 15.892 Atomic orbital electron populations 1.21863 0.96121 1.01773 0.99924 1.21673 0.93736 0.91696 0.95982 1.22468 1.02047 0.98868 1.00501 1.62116 1.18353 1.42693 0.99416 1.22365 0.99456 0.94282 0.91966 1.22966 0.97877 0.91686 0.92194 0.87827 1.22924 0.96865 1.00060 0.99253 1.23109 0.97338 0.98342 1.00836 1.23149 0.98376 0.95511 0.92134 1.62696 1.13371 1.44121 1.06975 1.19686 0.83351 0.94591 0.94603 0.98641 1.22471 1.00273 1.00642 0.97328 1.20970 0.94152 1.29122 1.09242 0.89965 1.24920 0.98463 0.94805 0.95094 1.69881 1.21223 1.35648 1.27255 0.86911 0.82063 0.79511 0.79926 1.20629 1.22732 1.19563 0.94123 0.93275 0.91827 0.88046 0.92372 0.93185 0.93809 0.92173 0.94995 0.91773 0.91978 0.91683 0.92062 0.90757 0.91449 0.84494 0.95511 0.90947 0.94184 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.10 37.15 0.34 -1.76 16 2 C 0.08 1.44 2.71 -67.71 -0.18 1.25 16 3 C -0.18 -3.02 8.60 37.16 0.32 -2.70 16 4 N -0.50 -9.91 3.99 -220.10 -0.88 -10.79 16 5 C 0.05 0.80 2.15 -3.83 -0.01 0.79 16 6 C 0.06 0.98 2.90 -66.64 -0.19 0.79 16 7 H 0.10 1.82 4.20 -51.93 -0.22 1.60 16 8 C -0.15 -1.90 6.57 -25.38 -0.17 -2.07 16 9 C -0.16 -1.74 7.06 -24.87 -0.18 -1.91 16 10 C 0.04 0.48 7.55 -1.90 -0.01 0.46 16 11 N -0.64 -9.94 7.18 -103.14 -0.74 -10.68 16 12 C 0.18 4.32 1.32 -68.86 -0.09 4.23 16 13 H 0.00 -0.09 5.77 -51.93 -0.30 -0.39 16 14 C -0.15 -3.33 6.90 37.16 0.26 -3.07 16 15 C -0.50 -13.78 8.34 -34.44 -0.29 -14.06 16 16 H 0.08 2.49 7.05 -52.48 -0.37 2.12 16 17 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 19 Si 0.88 22.24 24.43 -169.99 -4.15 18.08 16 20 H -0.28 -6.89 6.80 56.52 0.38 -6.50 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 23 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 2.21 6.19 -51.93 -0.32 1.89 16 27 H 0.06 1.09 6.78 -51.93 -0.35 0.74 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.66 6.63 -51.93 -0.34 0.32 16 30 H 0.06 0.91 5.54 -51.93 -0.29 0.62 16 31 H 0.03 0.55 7.60 -51.93 -0.39 0.16 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.74 7.69 -51.92 -0.40 0.35 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.34 5.15 8.38 -39.29 -0.33 4.82 16 39 H 0.03 0.52 6.02 -51.93 -0.31 0.20 16 40 H 0.07 1.63 7.29 -51.93 -0.38 1.25 16 41 H 0.04 0.94 3.26 -51.93 -0.17 0.77 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -29.18 301.06 -7.85 -37.03 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.09 Total: 4.84 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.30 Total: -16.18 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.85 Total: -48.30 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.15 Total: 18.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.18 -7.85 -37.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232857569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.595 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds