Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 N 1.46898 * 109.47210 * 120.00146 * 2 1 3 5 5 C 1.46897 * 111.00298 * 291.34574 * 4 2 1 6 6 C 1.52999 * 109.47397 * 150.54470 * 5 4 2 7 7 H 1.08997 * 110.06627 * 64.81508 * 6 5 4 8 8 C 1.53990 * 109.91863 * 186.02250 * 6 5 4 9 9 C 1.54595 * 105.14043 * 120.57816 * 8 6 5 10 10 C 1.54934 * 102.92166 * 21.95465 * 9 8 6 11 11 N 1.47902 * 109.91393 * 303.61387 * 6 5 4 12 12 C 1.46905 * 110.99722 * 167.39171 * 4 2 1 13 13 H 1.09000 * 109.47590 * 59.55036 * 12 4 2 14 14 C 1.53005 * 109.46790 * 179.55127 * 12 4 2 15 15 C 1.50702 * 109.47201 * 299.54423 * 12 4 2 16 16 H 1.08004 * 119.99652 * 0.02562 * 15 12 4 17 17 C 1.37875 * 119.99979 * 179.97438 * 15 12 4 18 18 N 1.31513 * 120.00070 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00111 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47439 * 89.99280 * 19 17 15 21 21 H 1.48498 * 109.47173 * 209.99638 * 19 17 15 22 22 H 1.48506 * 109.47014 * 329.99371 * 19 17 15 23 23 H 1.08996 * 109.47727 * 306.50999 * 1 2 3 24 24 H 1.09001 * 109.47702 * 66.51190 * 1 2 3 25 25 H 1.08998 * 109.47168 * 186.50786 * 1 2 3 26 26 H 1.09001 * 109.47077 * 240.00737 * 2 1 3 27 27 H 1.08999 * 109.46754 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47139 * 300.00239 * 3 2 1 29 29 H 1.09001 * 109.46640 * 60.00469 * 3 2 1 30 30 H 1.08998 * 109.47175 * 30.53798 * 5 4 2 31 31 H 1.09000 * 109.46816 * 270.54655 * 5 4 2 32 32 H 1.08996 * 110.30594 * 239.49677 * 8 6 5 33 33 H 1.09009 * 110.30687 * 1.55868 * 8 6 5 34 34 H 1.08999 * 110.72396 * 140.31932 * 9 8 6 35 35 H 1.09008 * 110.71786 * 263.42022 * 9 8 6 36 36 H 1.08994 * 110.66346 * 81.02289 * 10 9 8 37 37 H 1.08996 * 110.66429 * 203.98463 * 10 9 8 38 38 H 1.00903 * 111.00274 * 335.82407 * 11 6 5 39 39 H 1.08999 * 109.46946 * 289.71403 * 14 12 4 40 40 H 1.08998 * 109.47454 * 49.71510 * 14 12 4 41 41 H 1.09000 * 109.46990 * 169.71908 * 14 12 4 42 42 H 0.96997 * 120.00561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.7245 0.0822 2.4121 6 6 1.5445 -0.8710 3.5952 7 1 2.4815 -1.3865 3.8060 8 6 1.0873 -0.0846 4.8377 9 6 -0.2725 -0.7060 5.2310 10 6 -0.2141 -2.1095 4.5774 11 7 0.4845 -1.8567 3.2912 12 6 3.4570 -0.9768 1.0931 13 1 4.0045 -0.0420 0.9734 14 6 3.9316 -1.6868 2.3626 15 6 3.7070 -1.8620 -0.1007 16 1 2.8808 -2.1810 -0.7189 17 6 4.9906 -2.2636 -0.4043 18 7 5.2089 -3.0356 -1.4464 19 14 6.4195 -1.7112 0.6645 20 1 6.6339 -2.6981 1.7531 21 1 7.6481 -1.6130 -0.1637 22 1 6.1124 -0.3831 1.2538 23 1 -0.3634 0.6114 0.8259 24 1 -0.3634 0.4096 -0.9425 25 1 -0.3633 -1.0210 0.1165 26 1 1.8933 -0.5137 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 0.8087 0.6544 2.2638 31 1 2.5497 0.7642 2.6172 32 1 1.8068 -0.2052 5.6475 33 1 0.9664 0.9709 4.5939 34 1 -0.3601 -0.7883 6.3144 35 1 -1.0965 -0.1211 4.8222 36 1 0.3588 -2.7990 5.1973 37 1 -1.2187 -2.4948 4.4032 38 1 -0.1543 -1.4984 2.5971 39 1 3.9218 -0.9851 3.1966 40 1 3.2662 -2.5217 2.5825 41 1 4.9450 -2.0594 2.2133 42 1 6.1118 -3.3185 -1.6598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232857569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -4.037799 kcal Electronic energy + Delta-G solvation = -19033.389041 eV Core-core repulsion = 16433.825786 eV Total energy + Delta-G solvation = -2599.563256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52008 -38.47408 -35.25483 -33.61896 -31.61033 -30.66175 -29.36658 -27.94511 -27.16315 -25.23780 -22.39761 -22.31053 -21.09375 -20.23002 -18.60411 -17.46324 -16.79711 -16.22679 -15.91743 -15.80607 -15.24555 -14.99092 -14.65564 -14.43055 -14.10269 -13.90025 -13.48760 -13.29034 -13.00246 -12.74882 -12.58489 -12.49130 -12.25736 -12.17633 -12.08388 -12.00440 -11.82453 -11.78619 -11.48027 -11.35885 -11.05923 -10.72363 -10.66691 -9.21022 -8.75632 -8.23987 -6.24293 1.29709 1.33476 1.43534 2.33373 3.09210 3.16623 3.62579 3.95266 3.96072 4.11761 4.23831 4.32451 4.39990 4.50977 4.54462 4.58931 4.69935 4.72312 4.73942 4.75709 4.83977 4.86911 4.95100 5.00691 5.02054 5.04983 5.11062 5.15831 5.20223 5.32011 5.44505 5.48462 5.53800 5.59746 5.75932 6.08651 6.23600 6.56886 6.74778 6.82681 6.86123 7.39598 8.92728 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.008640 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.363228 B = 3239.881937 C = 3769.730979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 C -0.171 4.171 4 N -0.511 5.511 5 C 0.053 3.947 6 C 0.063 3.937 7 H 0.081 0.919 8 C -0.146 4.146 9 C -0.146 4.146 10 C 0.037 3.963 11 N -0.668 5.668 12 C 0.191 3.809 13 H -0.013 1.013 14 C -0.140 4.140 15 C -0.492 4.492 16 H 0.040 0.960 17 C 0.010 3.990 18 N -0.950 5.950 19 Si 0.946 3.054 20 H -0.269 1.269 21 H -0.301 1.301 22 H -0.253 1.253 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.338 0.662 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 9.176 12.851 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.036 4.036 3 C -0.230 4.230 4 N -0.234 5.234 5 C -0.076 4.076 6 C -0.048 4.048 7 H 0.098 0.902 8 C -0.186 4.186 9 C -0.186 4.186 10 C -0.092 4.092 11 N -0.296 5.296 12 C 0.083 3.917 13 H 0.004 0.996 14 C -0.197 4.197 15 C -0.531 4.531 16 H 0.058 0.942 17 C -0.187 4.187 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.229 1.229 22 H -0.178 1.178 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.300 8.022 12.756 18.253 hybrid contribution 1.109 1.333 -0.105 1.737 sum -9.191 9.355 12.651 18.222 Atomic orbital electron populations 1.21740 0.93077 1.01846 1.01781 1.21662 0.96097 0.92087 0.93793 1.22367 1.00260 0.97922 1.02479 1.62038 1.15693 1.44493 1.01225 1.22431 1.00181 0.94308 0.90645 1.22838 0.97255 0.91696 0.92977 0.90165 1.22869 0.97760 1.00189 0.97777 1.23041 0.96718 0.97005 1.01789 1.23190 0.98661 0.96520 0.90869 1.62637 1.13972 1.44455 1.08579 1.19454 0.85909 0.93114 0.93210 0.99582 1.22344 0.98939 1.00839 0.97591 1.21220 0.92898 1.28845 1.10134 0.94191 1.25731 1.01427 0.95087 0.96411 1.70037 1.21870 1.37790 1.29483 0.85902 0.78361 0.80008 0.78326 1.19521 1.22860 1.17759 0.91729 0.91720 0.92820 0.92737 0.95014 0.91475 0.91499 0.90009 0.95236 0.91242 0.90918 0.90007 0.91062 0.91313 0.90114 0.84524 0.92414 0.91832 0.95598 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.10 71.98 0.66 -2.94 16 2 C 0.07 2.66 2.71 44.92 0.12 2.78 16 3 C -0.17 -5.51 8.60 71.98 0.62 -4.89 16 4 N -0.51 -19.93 3.99 -850.25 -3.40 -23.33 16 5 C 0.05 1.62 2.15 86.30 0.19 1.81 16 6 C 0.06 1.80 2.90 45.06 0.13 1.93 16 7 H 0.08 2.67 4.20 -2.39 -0.01 2.66 16 8 C -0.15 -3.14 6.57 31.47 0.21 -2.94 16 9 C -0.15 -2.67 7.06 31.80 0.22 -2.45 16 10 C 0.04 0.82 7.55 86.65 0.65 1.48 16 11 N -0.67 -19.43 7.18 -480.22 -3.45 -22.88 16 12 C 0.19 8.97 1.32 44.17 0.06 9.03 16 13 H -0.01 -0.64 5.77 -2.39 -0.01 -0.65 16 14 C -0.14 -6.09 6.90 71.98 0.50 -5.59 16 15 C -0.49 -28.42 8.34 25.60 0.21 -28.21 16 16 H 0.04 2.59 7.05 -2.91 -0.02 2.57 16 17 C 0.01 0.58 5.45 84.65 0.46 1.04 16 18 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 19 Si 0.95 46.37 24.43 68.60 1.68 48.05 16 20 H -0.27 -12.66 6.80 99.48 0.68 -11.98 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 22 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 23 H 0.06 1.52 6.59 -2.39 -0.02 1.51 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.50 6.19 -2.39 -0.01 2.49 16 27 H 0.03 1.17 6.78 -2.39 -0.02 1.15 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.83 6.63 -2.39 -0.02 1.81 16 30 H 0.08 2.15 5.54 -2.39 -0.01 2.14 16 31 H 0.03 0.93 7.60 -2.39 -0.02 0.91 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.43 7.69 -2.38 -0.02 1.41 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.34 9.64 8.38 -89.69 -0.75 8.89 16 39 H 0.06 2.13 6.02 -2.39 -0.01 2.12 16 40 H 0.06 2.85 7.29 -2.39 -0.02 2.83 16 41 H 0.03 1.18 3.26 -2.39 -0.01 1.17 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -65.62 301.06 -0.68 -66.30 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.16 Total: 21.12 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.03 Total: -28.95 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -6.54 Total: -106.52 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.68 Total: 48.05 kcal Total: -65.62 -0.68 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232857569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.263 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds