Wall clock time and date at job start Mon Mar 30 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47342 * 2 1 4 4 C 1.46894 * 111.00001 * 199.58063 * 3 2 1 5 5 C 1.53001 * 109.47401 * 66.04599 * 4 3 2 6 6 C 1.50696 * 109.46985 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00357 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99749 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99730 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00115 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47580 * 89.99792 * 10 8 6 12 12 H 1.48508 * 109.47267 * 209.99567 * 10 8 6 13 13 H 1.48502 * 109.47032 * 329.99409 * 10 8 6 14 14 C 1.46903 * 110.99923 * 75.62235 * 3 2 1 15 15 C 1.52992 * 109.47162 * 199.73619 * 14 3 2 16 16 H 1.09001 * 109.47083 * 296.09810 * 15 14 3 17 17 C 1.53039 * 109.45459 * 176.12144 * 15 14 3 18 18 C 1.53117 * 109.28079 * 180.81518 * 17 15 14 19 19 C 1.53119 * 109.16371 * 57.65165 * 18 17 15 20 20 C 1.53027 * 109.27973 * 302.35104 * 19 18 17 21 21 N 1.46849 * 109.52815 * 59.17572 * 20 19 18 22 22 H 1.09002 * 109.47285 * 54.83114 * 1 2 3 23 23 H 1.08998 * 109.47423 * 174.83389 * 1 2 3 24 24 H 1.09005 * 109.47146 * 294.83364 * 1 2 3 25 25 H 1.08997 * 109.47163 * 240.00272 * 2 1 3 26 26 H 1.09001 * 109.47121 * 119.99789 * 2 1 3 27 27 H 1.09004 * 109.47021 * 186.04677 * 4 3 2 28 28 H 1.08995 * 109.47180 * 306.04187 * 4 3 2 29 29 H 1.08991 * 109.46821 * 300.00195 * 5 4 3 30 30 H 1.09000 * 109.46698 * 60.00072 * 5 4 3 31 31 H 0.97002 * 119.99761 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.46587 * 79.74027 * 14 3 2 33 33 H 1.08995 * 109.47592 * 319.74376 * 14 3 2 34 34 H 1.09001 * 109.50647 * 300.75287 * 17 15 14 35 35 H 1.09000 * 109.50254 * 60.82994 * 17 15 14 36 36 H 1.08997 * 109.52704 * 177.56439 * 18 17 15 37 37 H 1.09000 * 109.52033 * 297.68541 * 18 17 15 38 38 H 1.08997 * 109.50365 * 182.40360 * 19 18 17 39 39 H 1.09007 * 109.49963 * 62.28839 * 19 18 17 40 40 H 1.08997 * 109.46546 * 299.16101 * 20 19 18 41 41 H 1.08998 * 109.46831 * 179.19166 * 20 19 18 42 42 H 1.00891 * 111.00418 * 174.16164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4133 1.4506 -0.4596 5 6 3.4849 1.0392 -1.9315 6 6 4.9146 1.1071 -2.4031 7 1 5.6942 1.4135 -1.7213 8 6 5.2272 0.7792 -3.7053 9 7 4.2778 0.4066 -4.5356 10 14 6.9994 0.8626 -4.2897 11 1 7.6577 -0.4491 -4.0634 12 1 7.0282 1.1873 -5.7386 13 1 7.7214 1.9161 -3.5320 14 6 1.8741 1.9948 1.3285 15 6 1.9152 3.5186 1.1975 16 1 2.8932 3.8251 0.8265 17 6 1.6670 4.1548 2.5670 18 6 1.6887 5.6795 2.4276 19 6 0.6301 6.1060 1.4068 20 6 0.9083 5.4133 0.0710 21 7 0.8759 3.9570 0.2571 22 1 -0.3634 0.5919 -0.8401 23 1 -0.3634 -1.0235 -0.0925 24 1 -0.3634 0.4316 0.9327 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7850 2.4693 -0.3485 28 1 4.0249 0.7737 0.1370 29 1 3.1133 0.0207 -2.0425 30 1 2.8734 1.7162 -2.5280 31 1 4.4978 0.1755 -5.4517 32 1 2.6894 1.6634 1.9717 33 1 0.9218 1.6932 1.7645 34 1 0.6949 3.8379 2.9448 35 1 2.4469 3.8411 3.2608 36 1 1.4694 6.1367 3.3924 37 1 2.6735 6.0002 2.0880 38 1 0.6697 7.1869 1.2715 39 1 -0.3583 5.8197 1.7663 40 1 1.8911 5.7108 -0.2947 41 1 0.1481 5.7037 -0.6541 42 1 0.9622 3.4775 -0.6264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233432503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:16 Heat of formation + Delta-G solvation = -19.763364 kcal Electronic energy + Delta-G solvation = -18098.372770 eV Core-core repulsion = 15498.127603 eV Total energy + Delta-G solvation = -2600.245167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.90599 -36.90140 -33.17866 -32.01142 -31.51558 -30.69002 -28.58338 -25.67061 -23.98046 -23.24430 -21.86930 -21.10826 -19.71840 -19.22840 -16.52510 -16.15778 -15.13274 -14.79815 -14.59838 -14.41124 -14.12911 -13.68045 -13.53557 -13.19313 -12.92872 -12.56439 -12.17875 -11.92011 -11.82838 -11.52255 -11.29779 -11.03762 -10.98800 -10.88393 -10.74021 -10.56181 -10.30224 -10.26280 -10.13544 -9.76810 -9.30808 -9.11083 -8.33084 -8.07733 -7.65952 -6.00070 -4.02387 3.31108 3.37527 3.40612 4.34580 4.47800 4.53426 4.93547 4.97263 5.09035 5.31261 5.35607 5.47946 5.53613 5.55363 5.66402 5.76290 5.81034 5.86312 5.92397 5.95431 5.97563 6.01683 6.05249 6.17179 6.23512 6.28317 6.33262 6.44969 6.49986 6.58242 6.69161 6.98626 7.38762 7.56350 7.63099 7.81710 7.87429 7.91286 8.09469 8.43641 9.04876 9.61266 11.11140 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.005844 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.421609 B = 4790.037653 C = 5426.336648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.060 3.940 5 C 0.029 3.971 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.059 3.941 15 C 0.096 3.904 16 H 0.036 0.964 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.116 4.116 20 C 0.056 3.944 21 N -0.677 5.677 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.069 0.931 42 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 6.611 12.527 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.067 4.067 5 C -0.008 4.008 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.070 4.070 15 C -0.015 4.015 16 H 0.054 0.946 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.074 4.074 21 N -0.312 5.312 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.156 6.835 12.477 16.399 hybrid contribution 2.378 -0.333 -0.389 2.433 sum -5.778 6.502 12.088 14.892 Atomic orbital electron populations 1.21729 0.95564 1.00576 1.01918 1.22098 0.95416 0.89376 1.01041 1.62006 1.22507 1.17744 1.23827 1.22372 0.85209 0.99563 0.99509 1.19096 0.96498 0.96810 0.88394 1.21195 0.93439 1.45470 0.96017 0.92952 1.24981 0.97082 0.95329 0.96836 1.69973 1.31983 1.45757 1.05437 0.86620 0.85268 0.78326 0.77928 1.20696 1.21189 1.19960 1.22165 1.00440 0.93569 0.90777 1.21386 0.93216 0.94127 0.92745 0.94569 1.21598 1.01875 0.94990 0.96538 1.21546 0.99153 0.96094 0.98926 1.21574 0.99458 0.98850 0.95470 1.21875 0.99607 0.89188 0.96707 1.60253 1.49228 1.04314 1.17418 0.91758 0.93248 0.93491 0.89631 0.95935 0.92465 0.96401 0.96375 0.95850 0.93009 0.95205 0.90800 0.91388 0.92172 0.92298 0.92454 0.92258 0.91449 0.95599 0.91213 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.95 37.16 0.37 -1.65 16 2 C 0.05 0.82 5.55 -3.82 -0.02 0.80 16 3 N -0.54 -9.52 3.44 -234.64 -0.81 -10.32 16 4 C 0.06 1.27 4.72 -3.83 -0.02 1.25 16 5 C 0.03 0.76 4.94 -27.88 -0.14 0.62 16 6 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.06 0.90 4.49 -3.83 -0.02 0.88 16 15 C 0.10 1.39 2.51 -67.72 -0.17 1.22 16 16 H 0.04 0.60 6.91 -51.93 -0.36 0.24 16 17 C -0.11 -1.34 5.37 -26.65 -0.14 -1.48 16 18 C -0.12 -1.31 6.00 -26.61 -0.16 -1.47 16 19 C -0.12 -1.28 6.09 -26.66 -0.16 -1.44 16 20 C 0.06 0.73 6.55 -3.84 -0.03 0.70 16 21 N -0.68 -9.96 6.50 -106.76 -0.69 -10.66 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 25 H 0.09 1.65 5.88 -51.93 -0.31 1.35 16 26 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 27 H 0.06 1.21 6.70 -51.93 -0.35 0.87 16 28 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.02 0.49 6.25 -51.93 -0.32 0.17 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 33 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.36 6.02 7.94 -39.30 -0.31 5.71 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -28.80 321.69 -9.62 -38.42 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.79 Total: 1.18 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.90 Total: -14.10 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.76 Total: -47.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.80 -9.62 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.659 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds