Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47342 * 2 1 4 4 C 1.46894 * 111.00001 * 199.58063 * 3 2 1 5 5 C 1.53001 * 109.47401 * 66.04599 * 4 3 2 6 6 C 1.50696 * 109.46985 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00357 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99749 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99730 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00115 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47580 * 89.99792 * 10 8 6 12 12 H 1.48508 * 109.47267 * 209.99567 * 10 8 6 13 13 H 1.48502 * 109.47032 * 329.99409 * 10 8 6 14 14 C 1.46903 * 110.99923 * 75.62235 * 3 2 1 15 15 C 1.52992 * 109.47162 * 199.73619 * 14 3 2 16 16 H 1.09001 * 109.47083 * 296.09810 * 15 14 3 17 17 C 1.53039 * 109.45459 * 176.12144 * 15 14 3 18 18 C 1.53117 * 109.28079 * 180.81518 * 17 15 14 19 19 C 1.53119 * 109.16371 * 57.65165 * 18 17 15 20 20 C 1.53027 * 109.27973 * 302.35104 * 19 18 17 21 21 N 1.46849 * 109.52815 * 59.17572 * 20 19 18 22 22 H 1.09002 * 109.47285 * 54.83114 * 1 2 3 23 23 H 1.08998 * 109.47423 * 174.83389 * 1 2 3 24 24 H 1.09005 * 109.47146 * 294.83364 * 1 2 3 25 25 H 1.08997 * 109.47163 * 240.00272 * 2 1 3 26 26 H 1.09001 * 109.47121 * 119.99789 * 2 1 3 27 27 H 1.09004 * 109.47021 * 186.04677 * 4 3 2 28 28 H 1.08995 * 109.47180 * 306.04187 * 4 3 2 29 29 H 1.08991 * 109.46821 * 300.00195 * 5 4 3 30 30 H 1.09000 * 109.46698 * 60.00072 * 5 4 3 31 31 H 0.97002 * 119.99761 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.46587 * 79.74027 * 14 3 2 33 33 H 1.08995 * 109.47592 * 319.74376 * 14 3 2 34 34 H 1.09001 * 109.50647 * 300.75287 * 17 15 14 35 35 H 1.09000 * 109.50254 * 60.82994 * 17 15 14 36 36 H 1.08997 * 109.52704 * 177.56439 * 18 17 15 37 37 H 1.09000 * 109.52033 * 297.68541 * 18 17 15 38 38 H 1.08997 * 109.50365 * 182.40360 * 19 18 17 39 39 H 1.09007 * 109.49963 * 62.28839 * 19 18 17 40 40 H 1.08997 * 109.46546 * 299.16101 * 20 19 18 41 41 H 1.08998 * 109.46831 * 179.19166 * 20 19 18 42 42 H 1.00891 * 111.00418 * 174.16164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4133 1.4506 -0.4596 5 6 3.4849 1.0392 -1.9315 6 6 4.9146 1.1071 -2.4031 7 1 5.6942 1.4135 -1.7213 8 6 5.2272 0.7792 -3.7053 9 7 4.2778 0.4066 -4.5356 10 14 6.9994 0.8626 -4.2897 11 1 7.6577 -0.4491 -4.0634 12 1 7.0282 1.1873 -5.7386 13 1 7.7214 1.9161 -3.5320 14 6 1.8741 1.9948 1.3285 15 6 1.9152 3.5186 1.1975 16 1 2.8932 3.8251 0.8265 17 6 1.6670 4.1548 2.5670 18 6 1.6887 5.6795 2.4276 19 6 0.6301 6.1060 1.4068 20 6 0.9083 5.4133 0.0710 21 7 0.8759 3.9570 0.2571 22 1 -0.3634 0.5919 -0.8401 23 1 -0.3634 -1.0235 -0.0925 24 1 -0.3634 0.4316 0.9327 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7850 2.4693 -0.3485 28 1 4.0249 0.7737 0.1370 29 1 3.1133 0.0207 -2.0425 30 1 2.8734 1.7162 -2.5280 31 1 4.4978 0.1755 -5.4517 32 1 2.6894 1.6634 1.9717 33 1 0.9218 1.6932 1.7645 34 1 0.6949 3.8379 2.9448 35 1 2.4469 3.8411 3.2608 36 1 1.4694 6.1367 3.3924 37 1 2.6735 6.0002 2.0880 38 1 0.6697 7.1869 1.2715 39 1 -0.3583 5.8197 1.7663 40 1 1.8911 5.7108 -0.2947 41 1 0.1481 5.7037 -0.6541 42 1 0.9622 3.4775 -0.6264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233432503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = -37.789359 kcal Electronic energy + Delta-G solvation = -18099.154436 eV Core-core repulsion = 15498.127603 eV Total energy + Delta-G solvation = -2601.026833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09950 -38.24480 -35.26692 -33.11135 -32.58680 -32.44640 -30.11336 -27.21253 -25.63678 -24.28777 -23.34530 -22.54611 -21.05258 -20.43137 -18.59049 -17.37872 -16.70252 -16.26043 -16.14372 -15.85198 -15.37969 -15.00754 -14.67241 -14.56702 -14.23284 -13.90188 -13.66629 -13.38472 -13.25511 -12.95537 -12.85143 -12.58266 -12.48233 -12.41567 -12.13959 -11.72507 -11.66709 -11.63481 -11.39235 -11.23955 -11.19600 -10.99957 -10.53356 -9.30412 -9.08062 -8.21230 -6.32341 1.38130 1.39351 1.50321 2.38534 3.03689 3.11994 3.37030 3.93817 3.98650 4.09605 4.16329 4.23323 4.37875 4.41342 4.44909 4.58335 4.59724 4.64546 4.70071 4.82202 4.84434 4.86608 4.93812 5.04712 5.09018 5.11268 5.13454 5.20939 5.25302 5.32343 5.43278 5.45659 5.52047 5.69291 5.78575 6.12763 6.23727 6.36018 6.41220 6.58101 6.84641 7.36562 8.90610 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.005844 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.421609 B = 4790.037653 C = 5426.336648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.081 3.919 5 C 0.040 3.960 6 C -0.546 4.546 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.929 5.929 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.265 1.265 14 C 0.063 3.937 15 C 0.096 3.904 16 H 0.011 0.989 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.110 4.110 20 C 0.052 3.948 21 N -0.679 5.679 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.015 0.985 29 H -0.003 1.003 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 7.265 14.162 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 N -0.265 5.265 4 C -0.047 4.047 5 C 0.002 3.998 6 C -0.584 4.584 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.569 5.569 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.190 1.190 14 C -0.065 4.065 15 C -0.014 4.014 16 H 0.029 0.971 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.078 4.078 21 N -0.312 5.312 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.077 7.499 14.142 17.929 hybrid contribution 2.300 -0.545 -0.905 2.531 sum -5.777 6.954 13.236 16.029 Atomic orbital electron populations 1.21637 0.93278 1.01640 1.02130 1.22111 0.97227 0.88645 1.00045 1.61953 1.20057 1.18586 1.25930 1.21952 0.87405 0.98902 0.96422 1.18902 0.94929 0.94803 0.91129 1.21610 0.94565 1.45620 0.96628 0.92649 1.25914 1.01875 0.94664 0.96944 1.70105 1.34438 1.46477 1.05876 0.85479 0.79471 0.78821 0.77463 1.19684 1.20614 1.18965 1.22222 1.01301 0.93843 0.89123 1.21423 0.91968 0.93852 0.94196 0.97088 1.21576 1.02554 0.95595 0.94762 1.21564 0.98757 0.95383 0.99964 1.21555 0.99593 0.99612 0.94049 1.21994 0.99043 0.88353 0.98406 1.60341 1.49033 1.05215 1.16576 0.93137 0.91493 0.91861 0.92819 0.94653 0.92791 0.96699 0.98489 0.98946 0.92747 0.94727 0.89273 0.90723 0.91124 0.90094 0.93176 0.90564 0.91088 0.97064 0.90626 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.95 71.98 0.72 -2.86 16 2 C 0.05 1.60 5.55 86.30 0.48 2.08 16 3 N -0.54 -19.34 3.44 -896.25 -3.08 -22.42 16 4 C 0.08 3.49 4.72 86.30 0.41 3.90 16 5 C 0.04 2.14 4.94 29.85 0.15 2.29 16 6 C -0.55 -31.62 9.11 25.60 0.23 -31.38 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 10 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.06 1.84 4.49 86.30 0.39 2.23 16 15 C 0.10 2.71 2.51 44.93 0.11 2.83 16 16 H 0.01 0.37 6.91 -2.39 -0.02 0.35 16 17 C -0.11 -2.32 5.37 30.65 0.16 -2.16 16 18 C -0.12 -2.33 6.00 30.67 0.18 -2.15 16 19 C -0.11 -2.21 6.09 30.64 0.19 -2.02 16 20 C 0.05 1.31 6.55 86.32 0.57 1.88 16 21 N -0.68 -19.73 6.50 -491.69 -3.20 -22.93 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.55 6.89 -2.38 -0.02 1.53 16 25 H 0.05 2.16 5.88 -2.39 -0.01 2.14 16 26 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 27 H 0.05 2.35 6.70 -2.38 -0.02 2.33 16 28 H 0.01 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.00 -0.18 6.25 -2.39 -0.01 -0.20 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.03 0.99 8.00 -2.38 -0.02 0.97 16 33 H 0.09 2.36 6.55 -2.39 -0.02 2.34 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.35 11.79 7.94 -89.70 -0.71 11.08 16 Total: -1.00 -62.66 321.69 0.33 -62.33 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.25 Total: 17.72 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.05 Total: -24.66 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -5.99 Total: -102.14 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.66 0.33 -62.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.544 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds