Wall clock time and date at job start Mon Mar 30 2020 04:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47404 * 2 1 4 4 C 1.46892 * 111.00401 * 164.13343 * 3 2 1 5 5 C 1.52992 * 109.47410 * 293.95756 * 4 3 2 6 6 C 1.50705 * 109.47502 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99520 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00264 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47152 * 90.00191 * 10 8 6 12 12 H 1.48510 * 109.46932 * 209.99687 * 10 8 6 13 13 H 1.48495 * 109.47168 * 329.99701 * 10 8 6 14 14 C 1.46904 * 111.00017 * 288.09458 * 3 2 1 15 15 C 1.53005 * 109.47264 * 160.15205 * 14 3 2 16 16 H 1.08996 * 109.46305 * 63.51966 * 15 14 3 17 17 C 1.53032 * 109.45951 * 183.50574 * 15 14 3 18 18 C 1.53126 * 109.27790 * 179.19303 * 17 15 14 19 19 C 1.53120 * 109.15799 * 302.34624 * 18 17 15 20 20 C 1.53039 * 109.27879 * 57.65164 * 19 18 17 21 21 N 1.46842 * 109.52662 * 300.81819 * 20 19 18 22 22 H 1.09004 * 109.46507 * 299.13974 * 1 2 3 23 23 H 1.08996 * 109.47140 * 59.13934 * 1 2 3 24 24 H 1.08992 * 109.46983 * 179.14246 * 1 2 3 25 25 H 1.09000 * 109.46892 * 240.00249 * 2 1 3 26 26 H 1.08996 * 109.47244 * 119.99991 * 2 1 3 27 27 H 1.09007 * 109.46945 * 53.95882 * 4 3 2 28 28 H 1.09007 * 109.47502 * 173.95242 * 4 3 2 29 29 H 1.09004 * 109.47370 * 299.99523 * 5 4 3 30 30 H 1.09003 * 109.47404 * 59.99779 * 5 4 3 31 31 H 0.97001 * 120.00516 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.46905 * 280.14697 * 14 3 2 33 33 H 1.08994 * 109.47244 * 40.14597 * 14 3 2 34 34 H 1.09003 * 109.50471 * 299.12982 * 17 15 14 35 35 H 1.09002 * 109.51057 * 59.25381 * 17 15 14 36 36 H 1.09001 * 109.51772 * 62.24665 * 18 17 15 37 37 H 1.08996 * 109.52738 * 182.37455 * 18 17 15 38 38 H 1.08999 * 109.50222 * 177.59288 * 19 18 17 39 39 H 1.09000 * 109.50315 * 297.70760 * 19 18 17 40 40 H 1.09002 * 109.46061 * 60.83688 * 20 19 18 41 41 H 1.09004 * 109.45989 * 180.81587 * 20 19 18 42 42 H 1.00902 * 111.00027 * 297.64917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4389 1.4416 0.3749 5 6 3.6000 0.9986 1.8304 6 6 5.0560 1.0561 2.2149 7 1 5.7927 1.3770 1.4933 8 6 5.4475 0.7001 3.4880 9 7 6.7180 0.7507 3.8237 10 14 4.1731 0.1457 4.7362 11 1 3.9995 -1.3263 4.6460 12 1 4.6285 0.5076 6.1027 13 1 2.8784 0.8152 4.4525 14 6 1.7937 2.0233 -1.3036 15 6 1.8410 3.5440 -1.1419 16 1 2.8373 3.8440 -0.8175 17 6 1.5190 4.2095 -2.4819 18 6 1.5477 5.7308 -2.3106 19 6 0.5454 6.1333 -1.2252 20 6 0.8956 5.4120 0.0783 21 7 0.8537 3.9601 -0.1376 22 1 -0.3632 0.5005 0.8977 23 1 -0.3633 0.5271 -0.8821 24 1 -0.3633 -1.0275 -0.0154 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0125 0.7781 -0.2725 28 1 3.8038 2.4627 0.2634 29 1 3.0265 1.6620 2.4778 30 1 3.2352 -0.0225 1.9420 31 1 6.9935 0.4999 4.7193 32 1 2.5690 1.7079 -2.0019 33 1 0.8171 1.7289 -1.6879 34 1 2.2611 3.9127 -3.2232 35 1 0.5281 3.8993 -2.8136 36 1 2.5490 6.0454 -2.0166 37 1 1.2776 6.2086 -3.2523 38 1 0.5919 7.2110 -1.0686 39 1 -0.4608 5.8533 -1.5371 40 1 1.8965 5.7031 0.3969 41 1 0.1752 5.6852 0.8494 42 1 -0.0741 3.6597 -0.3964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233432584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:18 Heat of formation + Delta-G solvation = -13.716561 kcal Electronic energy + Delta-G solvation = -18146.303519 eV Core-core repulsion = 15546.320561 eV Total energy + Delta-G solvation = -2599.982958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.13571 -37.06004 -33.07294 -32.00203 -31.50276 -30.92185 -28.88776 -25.82447 -23.93399 -23.24790 -21.86006 -20.89400 -20.30767 -19.41453 -16.77511 -15.66337 -15.31768 -14.99284 -14.63381 -14.39143 -14.21044 -13.96918 -13.69261 -13.25936 -12.71206 -12.50836 -12.35448 -12.07446 -11.88451 -11.67461 -11.40426 -11.27514 -11.11302 -11.05703 -10.84121 -10.64661 -10.38836 -10.33219 -9.76421 -9.70693 -9.56457 -9.08622 -8.44086 -7.99590 -7.58695 -5.96722 -3.93754 3.38361 3.45690 3.54221 4.27422 4.47815 4.54353 4.76093 4.87017 4.93893 5.12427 5.31668 5.37188 5.39723 5.41991 5.51530 5.66750 5.69863 5.75472 5.77930 5.83717 5.88653 5.92981 5.96628 6.04490 6.10986 6.20904 6.24714 6.32488 6.40475 6.49873 6.58098 6.92747 7.25323 7.35794 7.48630 7.65881 7.79019 7.84261 7.98397 8.62142 9.07978 9.66726 11.16837 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.006144 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.791964 B = 4556.253298 C = 5013.926660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.521 5.521 4 C 0.075 3.925 5 C -0.006 4.006 6 C -0.518 4.518 7 H 0.069 0.931 8 C 0.067 3.933 9 N -0.907 5.907 10 Si 0.879 3.121 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.261 1.261 14 C 0.061 3.939 15 C 0.095 3.905 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.118 4.118 19 C -0.158 4.158 20 C 0.057 3.943 21 N -0.653 5.653 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.021 0.979 26 H 0.081 0.919 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 6.375 -12.076 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.244 5.244 4 C -0.052 4.052 5 C -0.043 4.043 6 C -0.556 4.556 7 H 0.087 0.913 8 C -0.134 4.134 9 N -0.546 5.546 10 Si 0.706 3.294 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.185 1.185 14 C -0.068 4.068 15 C -0.016 4.016 16 H 0.100 0.900 17 C -0.193 4.193 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.073 4.073 21 N -0.281 5.281 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.162 6.446 -11.015 19.064 hybrid contribution -0.411 -0.385 -0.820 0.995 sum -14.573 6.061 -11.835 19.728 Atomic orbital electron populations 1.21754 0.95815 1.00358 1.01971 1.22122 0.95234 0.90073 1.00864 1.61993 1.20013 1.15546 1.26880 1.22082 0.84640 1.00143 0.98342 1.19559 0.97144 0.95711 0.91907 1.21121 0.91621 1.44719 0.98164 0.91325 1.24985 0.95080 0.95103 0.98229 1.69919 1.15246 1.49372 1.20104 0.86778 0.82859 0.79178 0.80563 1.20500 1.21560 1.18527 1.22113 1.00081 0.93542 0.91058 1.21575 0.97318 0.94085 0.88604 0.89959 1.22291 1.01706 0.95859 0.99417 1.21527 0.99794 0.95762 0.98469 1.22302 0.98951 1.00857 0.97660 1.22037 1.02335 0.87697 0.95268 1.60443 1.08857 1.11414 1.47387 0.91843 0.93522 0.93275 0.96028 0.90029 0.96330 0.91649 0.95457 0.97293 0.92862 0.95013 0.91671 0.91708 0.92298 0.91824 0.92472 0.91918 0.92421 0.90934 0.91046 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.99 37.16 0.37 -1.50 16 2 C 0.05 0.73 5.55 -3.82 -0.02 0.71 16 3 N -0.52 -9.04 4.15 -234.63 -0.97 -10.01 16 4 C 0.07 1.56 4.72 -3.83 -0.02 1.55 16 5 C -0.01 -0.14 4.00 -27.88 -0.11 -0.25 16 6 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 10 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 14 C 0.06 0.86 4.46 -3.82 -0.02 0.84 16 15 C 0.10 1.26 2.45 -67.72 -0.17 1.09 16 16 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 17 C -0.15 -1.62 5.36 -26.65 -0.14 -1.77 16 18 C -0.12 -1.17 6.00 -26.60 -0.16 -1.33 16 19 C -0.16 -1.53 6.08 -26.65 -0.16 -1.69 16 20 C 0.06 0.66 6.55 -3.84 -0.03 0.64 16 21 N -0.65 -8.69 6.26 -106.76 -0.67 -9.36 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.55 6.51 -51.93 -0.34 0.22 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 26 H 0.08 1.48 5.94 -51.93 -0.31 1.17 16 27 H 0.02 0.39 8.12 -51.92 -0.42 -0.03 16 28 H 0.07 1.40 6.70 -51.93 -0.35 1.05 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 30 H 0.01 0.22 5.71 -51.93 -0.30 -0.08 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 33 H 0.06 0.82 6.23 -51.93 -0.32 0.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.33 4.03 8.79 -39.29 -0.35 3.68 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -30.81 318.77 -9.38 -40.19 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.76 Total: -0.28 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.88 Total: -15.30 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.87 Total: -47.18 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.81 -9.38 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.475 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds