Wall clock time and date at job start Mon Mar 30 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47404 * 2 1 4 4 C 1.46892 * 111.00401 * 164.13343 * 3 2 1 5 5 C 1.52992 * 109.47410 * 293.95756 * 4 3 2 6 6 C 1.50705 * 109.47502 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99520 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00264 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47152 * 90.00191 * 10 8 6 12 12 H 1.48510 * 109.46932 * 209.99687 * 10 8 6 13 13 H 1.48495 * 109.47168 * 329.99701 * 10 8 6 14 14 C 1.46904 * 111.00017 * 288.09458 * 3 2 1 15 15 C 1.53005 * 109.47264 * 160.15205 * 14 3 2 16 16 H 1.08996 * 109.46305 * 63.51966 * 15 14 3 17 17 C 1.53032 * 109.45951 * 183.50574 * 15 14 3 18 18 C 1.53126 * 109.27790 * 179.19303 * 17 15 14 19 19 C 1.53120 * 109.15799 * 302.34624 * 18 17 15 20 20 C 1.53039 * 109.27879 * 57.65164 * 19 18 17 21 21 N 1.46842 * 109.52662 * 300.81819 * 20 19 18 22 22 H 1.09004 * 109.46507 * 299.13974 * 1 2 3 23 23 H 1.08996 * 109.47140 * 59.13934 * 1 2 3 24 24 H 1.08992 * 109.46983 * 179.14246 * 1 2 3 25 25 H 1.09000 * 109.46892 * 240.00249 * 2 1 3 26 26 H 1.08996 * 109.47244 * 119.99991 * 2 1 3 27 27 H 1.09007 * 109.46945 * 53.95882 * 4 3 2 28 28 H 1.09007 * 109.47502 * 173.95242 * 4 3 2 29 29 H 1.09004 * 109.47370 * 299.99523 * 5 4 3 30 30 H 1.09003 * 109.47404 * 59.99779 * 5 4 3 31 31 H 0.97001 * 120.00516 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.46905 * 280.14697 * 14 3 2 33 33 H 1.08994 * 109.47244 * 40.14597 * 14 3 2 34 34 H 1.09003 * 109.50471 * 299.12982 * 17 15 14 35 35 H 1.09002 * 109.51057 * 59.25381 * 17 15 14 36 36 H 1.09001 * 109.51772 * 62.24665 * 18 17 15 37 37 H 1.08996 * 109.52738 * 182.37455 * 18 17 15 38 38 H 1.08999 * 109.50222 * 177.59288 * 19 18 17 39 39 H 1.09000 * 109.50315 * 297.70760 * 19 18 17 40 40 H 1.09002 * 109.46061 * 60.83688 * 20 19 18 41 41 H 1.09004 * 109.45989 * 180.81587 * 20 19 18 42 42 H 1.00902 * 111.00027 * 297.64917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4389 1.4416 0.3749 5 6 3.6000 0.9986 1.8304 6 6 5.0560 1.0561 2.2149 7 1 5.7927 1.3770 1.4933 8 6 5.4475 0.7001 3.4880 9 7 6.7180 0.7507 3.8237 10 14 4.1731 0.1457 4.7362 11 1 3.9995 -1.3263 4.6460 12 1 4.6285 0.5076 6.1027 13 1 2.8784 0.8152 4.4525 14 6 1.7937 2.0233 -1.3036 15 6 1.8410 3.5440 -1.1419 16 1 2.8373 3.8440 -0.8175 17 6 1.5190 4.2095 -2.4819 18 6 1.5477 5.7308 -2.3106 19 6 0.5454 6.1333 -1.2252 20 6 0.8956 5.4120 0.0783 21 7 0.8537 3.9601 -0.1376 22 1 -0.3632 0.5005 0.8977 23 1 -0.3633 0.5271 -0.8821 24 1 -0.3633 -1.0275 -0.0154 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0125 0.7781 -0.2725 28 1 3.8038 2.4627 0.2634 29 1 3.0265 1.6620 2.4778 30 1 3.2352 -0.0225 1.9420 31 1 6.9935 0.4999 4.7193 32 1 2.5690 1.7079 -2.0019 33 1 0.8171 1.7289 -1.6879 34 1 2.2611 3.9127 -3.2232 35 1 0.5281 3.8993 -2.8136 36 1 2.5490 6.0454 -2.0166 37 1 1.2776 6.2086 -3.2523 38 1 0.5919 7.2110 -1.0686 39 1 -0.4608 5.8533 -1.5371 40 1 1.8965 5.7031 0.3969 41 1 0.1752 5.6852 0.8494 42 1 -0.0741 3.6597 -0.3964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233432584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:17 Heat of formation + Delta-G solvation = -34.876310 kcal Electronic energy + Delta-G solvation = -18147.221075 eV Core-core repulsion = 15546.320561 eV Total energy + Delta-G solvation = -2600.900514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18948 -38.35781 -35.19433 -33.07831 -32.68932 -32.42786 -30.31918 -27.26458 -25.51464 -24.19424 -23.14781 -22.38773 -21.21416 -20.92805 -18.97805 -16.81073 -16.63705 -16.20510 -16.08611 -15.64118 -15.43433 -15.32961 -14.88147 -14.65881 -14.60644 -13.71672 -13.65910 -13.39718 -13.14790 -12.88746 -12.77798 -12.54423 -12.49630 -12.14965 -12.04300 -11.87483 -11.77090 -11.60428 -11.47561 -11.34376 -11.30516 -11.14553 -10.72356 -8.99536 -8.95492 -8.29202 -6.32600 1.35435 1.38493 1.52843 2.37724 3.04581 3.06652 3.47841 3.83682 3.97363 4.05813 4.16293 4.21668 4.32847 4.43149 4.44340 4.53653 4.58261 4.65198 4.70762 4.77151 4.87042 4.87868 4.95452 5.00568 5.07986 5.12592 5.14900 5.20513 5.20962 5.24102 5.34855 5.43273 5.44869 5.57573 5.67181 6.21944 6.25973 6.39388 6.48665 6.75010 6.76569 7.32070 8.87710 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.006144 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.791964 B = 4556.253298 C = 5013.926660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.040 3.960 3 N -0.525 5.525 4 C 0.089 3.911 5 C 0.005 3.995 6 C -0.531 4.531 7 H 0.029 0.971 8 C 0.007 3.993 9 N -0.952 5.952 10 Si 0.951 3.049 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.250 1.250 14 C 0.063 3.937 15 C 0.099 3.901 16 H 0.049 0.951 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.149 4.149 20 C 0.056 3.944 21 N -0.671 5.671 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 6.215 -12.807 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 N -0.248 5.248 4 C -0.038 4.038 5 C -0.033 4.033 6 C -0.570 4.570 7 H 0.048 0.952 8 C -0.189 4.189 9 N -0.592 5.592 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.174 1.174 14 C -0.065 4.065 15 C -0.012 4.012 16 H 0.067 0.933 17 C -0.184 4.184 18 C -0.156 4.156 19 C -0.188 4.188 20 C -0.073 4.073 21 N -0.300 5.300 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.214 6.289 -11.771 21.781 hybrid contribution 0.607 -0.310 -0.643 0.937 sum -16.606 5.980 -12.415 21.579 Atomic orbital electron populations 1.21668 0.93039 1.01788 1.02323 1.22208 0.97447 0.89020 1.00092 1.61951 1.16936 1.16774 1.29187 1.21717 0.87293 0.98911 0.95910 1.19394 0.93857 0.95874 0.94145 1.21439 0.93310 1.44450 0.97777 0.95248 1.25952 0.97333 0.95103 1.00541 1.70063 1.17560 1.50611 1.21003 0.85646 0.80042 0.79375 0.77543 1.18963 1.20811 1.17402 1.22205 1.01255 0.93792 0.89299 1.21434 0.95880 0.93724 0.90174 0.93284 1.22196 1.02577 0.96041 0.97594 1.21543 0.99293 0.95390 0.99390 1.22205 0.99343 1.01137 0.96143 1.22009 1.01312 0.87238 0.96773 1.60378 1.09316 1.12527 1.47827 0.92755 0.91773 0.91401 0.95243 0.92380 0.97304 0.92891 0.96409 0.96576 0.92475 0.95154 0.89123 0.91495 0.90652 0.93162 0.90752 0.90939 0.91133 0.93171 0.90345 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.99 71.98 0.72 -2.32 16 2 C 0.04 1.23 5.55 86.30 0.48 1.71 16 3 N -0.52 -17.76 4.15 -896.23 -3.72 -21.48 16 4 C 0.09 3.83 4.72 86.30 0.41 4.23 16 5 C 0.00 0.25 4.00 29.85 0.12 0.37 16 6 C -0.53 -32.17 9.66 25.60 0.25 -31.92 16 7 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 8 C 0.01 0.45 5.47 84.65 0.46 0.91 16 9 N -0.95 -61.45 13.96 21.44 0.30 -61.15 16 10 Si 0.95 46.40 27.47 68.60 1.88 48.29 16 11 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 14 C 0.06 1.67 4.46 86.30 0.38 2.06 16 15 C 0.10 2.54 2.45 44.94 0.11 2.65 16 16 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 17 C -0.14 -2.76 5.36 30.65 0.16 -2.60 16 18 C -0.12 -2.14 6.00 30.68 0.18 -1.95 16 19 C -0.15 -2.55 6.08 30.65 0.19 -2.37 16 20 C 0.06 1.27 6.55 86.33 0.57 1.83 16 21 N -0.67 -17.01 6.26 -491.67 -3.08 -20.09 16 22 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.06 1.27 6.51 -2.39 -0.02 1.25 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 26 H 0.06 2.04 5.94 -2.39 -0.01 2.03 16 27 H 0.01 0.39 8.12 -2.38 -0.02 0.37 16 28 H 0.05 2.37 6.70 -2.38 -0.02 2.35 16 29 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 30 H 0.02 0.79 5.71 -2.39 -0.01 0.77 16 31 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.03 0.83 8.00 -2.39 -0.02 0.81 16 33 H 0.09 1.98 6.23 -2.39 -0.01 1.97 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.34 7.43 8.79 -89.69 -0.79 6.64 16 Total: -1.00 -67.77 318.77 -0.46 -68.23 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.12 Total: 13.61 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 4.03 Total: -27.41 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -6.50 Total: -102.72 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Total: -67.77 -0.46 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.353 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds