Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47064 * 2 1 4 4 C 1.46909 * 110.99919 * 287.95280 * 3 2 1 5 5 C 1.53001 * 109.47111 * 160.32181 * 4 3 2 6 6 C 1.50695 * 109.47220 * 184.96716 * 5 4 3 7 7 H 1.08004 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99993 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00180 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46963 * 60.00058 * 10 8 6 12 12 H 1.48502 * 109.47102 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47129 * 300.00131 * 10 8 6 14 14 C 1.46900 * 111.00357 * 164.00042 * 3 2 1 15 15 C 1.53002 * 109.46915 * 293.95588 * 14 3 2 16 16 H 1.08997 * 109.50570 * 54.91568 * 15 14 3 17 17 C 1.53113 * 109.50516 * 174.99627 * 15 14 3 18 18 C 1.53117 * 109.16141 * 177.63097 * 17 15 14 19 19 C 1.53032 * 109.27881 * 302.34722 * 18 17 15 20 20 N 1.46846 * 109.52442 * 59.17889 * 19 18 17 21 21 C 1.46847 * 111.19647 * 298.25451 * 20 19 18 22 22 H 1.09002 * 109.47320 * 299.24294 * 1 2 3 23 23 H 1.09007 * 109.47048 * 59.24598 * 1 2 3 24 24 H 1.08999 * 109.47579 * 179.24079 * 1 2 3 25 25 H 1.09005 * 109.47187 * 239.99903 * 2 1 3 26 26 H 1.08999 * 109.46897 * 119.99953 * 2 1 3 27 27 H 1.09002 * 109.46849 * 280.31929 * 4 3 2 28 28 H 1.08991 * 109.46939 * 40.32066 * 4 3 2 29 29 H 1.09008 * 109.46928 * 304.96911 * 5 4 3 30 30 H 1.08996 * 109.47332 * 64.96257 * 5 4 3 31 31 H 0.97001 * 120.00192 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.47383 * 173.95168 * 14 3 2 33 33 H 1.09002 * 109.46898 * 53.95194 * 14 3 2 34 34 H 1.09001 * 109.52125 * 57.72910 * 17 15 14 35 35 H 1.08999 * 109.57336 * 297.57145 * 17 15 14 36 36 H 1.09004 * 109.50267 * 62.29104 * 18 17 15 37 37 H 1.09003 * 109.50489 * 182.40339 * 18 17 15 38 38 H 1.09002 * 109.46365 * 179.19799 * 19 18 17 39 39 H 1.09001 * 109.46153 * 299.15652 * 19 18 17 40 40 H 1.00896 * 110.99706 * 62.35779 * 20 19 18 41 41 H 1.08989 * 109.46422 * 301.72640 * 21 20 19 42 42 H 1.09004 * 109.45873 * 181.75204 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7965 2.0222 -1.3047 5 6 1.8475 3.5430 -1.1449 6 6 1.4985 4.1979 -2.4565 7 1 1.2634 3.5902 -3.3178 8 6 1.4783 5.5729 -2.5566 9 7 1.7632 6.3129 -1.5074 10 14 1.0464 6.3847 -4.1826 11 1 -0.3209 5.9750 -4.5926 12 1 1.0958 7.8608 -4.0275 13 1 2.0214 5.9636 -5.2205 14 6 3.4380 1.4420 0.3780 15 6 3.5958 1.0001 1.8343 16 1 3.1493 0.0145 1.9660 17 6 5.0834 0.9392 2.1917 18 6 5.2306 0.5539 3.6663 19 6 4.4836 1.5715 4.5314 20 7 3.0653 1.5915 4.1514 21 6 2.8962 2.0048 2.7525 22 1 -0.3634 0.5020 0.8967 23 1 -0.3633 0.5255 -0.8832 24 1 -0.3634 -1.0275 -0.0136 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.5717 1.7039 -2.0018 28 1 0.8196 1.7299 -1.6895 29 1 1.1324 3.8524 -0.3826 30 1 2.8513 3.8433 -0.8446 31 1 1.7493 7.2802 -1.5780 32 1 3.8030 2.4629 0.2665 33 1 4.0130 0.7780 -0.2675 34 1 5.5387 1.9151 2.0231 35 1 5.5783 0.1938 1.5693 36 1 4.8099 -0.4387 3.8268 37 1 6.2862 0.5506 3.9380 38 1 4.5745 1.2921 5.5811 39 1 4.9140 2.5616 4.3809 40 1 2.6336 0.6949 4.3184 41 1 3.3339 2.9928 2.6103 42 1 1.8340 2.0399 2.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233432616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = -20.550312 kcal Electronic energy + Delta-G solvation = -18069.121941 eV Core-core repulsion = 15468.842649 eV Total energy + Delta-G solvation = -2600.279292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16913 -37.05453 -33.18414 -32.29214 -31.24156 -30.70616 -28.48494 -25.29715 -24.01803 -23.43752 -21.97181 -21.27964 -20.05456 -19.38984 -16.34679 -15.84988 -15.37382 -15.08573 -14.64411 -14.57371 -14.26543 -13.77145 -13.62744 -12.94964 -12.69921 -12.32416 -12.13573 -12.03533 -11.82296 -11.45479 -11.35216 -11.18613 -11.04998 -11.00559 -10.83279 -10.75697 -10.56470 -10.18327 -10.11753 -9.68745 -9.33651 -9.07941 -8.29570 -8.22644 -7.64226 -5.95797 -3.98198 3.35192 3.39720 3.41875 4.34225 4.44142 4.53927 4.78325 4.94810 5.07414 5.12783 5.32303 5.39836 5.43117 5.55637 5.60138 5.65676 5.68724 5.83183 5.86233 5.89074 5.97622 6.06099 6.11869 6.16072 6.19633 6.25923 6.34475 6.47953 6.52443 6.57753 6.66242 7.06163 7.17392 7.49935 7.57143 7.61364 7.84075 7.97017 8.14521 8.47794 9.09154 9.65188 11.15407 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.005558 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.634542 B = 5036.440479 C = 5624.955500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.534 5.534 4 C 0.061 3.939 5 C 0.033 3.967 6 C -0.523 4.523 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.064 3.936 15 C -0.117 4.117 16 H 0.065 0.935 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.055 3.945 20 N -0.688 5.688 21 C 0.070 3.930 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.013 0.987 31 H 0.261 0.739 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.335 0.665 41 H 0.072 0.928 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -12.980 9.004 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.066 4.066 5 C -0.005 4.005 6 C -0.562 4.562 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.065 4.065 15 C -0.138 4.138 16 H 0.083 0.917 17 C -0.154 4.154 18 C -0.194 4.194 19 C -0.075 4.075 20 N -0.315 5.315 21 C -0.059 4.059 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.030 -11.876 9.676 15.840 hybrid contribution 0.675 -0.803 -2.116 2.362 sum 4.705 -12.679 7.560 15.494 Atomic orbital electron populations 1.21767 0.95247 1.00351 1.02963 1.22084 0.96066 0.90431 0.99491 1.62129 1.16627 1.15133 1.31963 1.22392 0.99117 0.98643 0.86436 1.19027 0.97368 0.87217 0.96868 1.21169 1.47021 0.91426 0.96548 0.93004 1.24975 0.95425 0.97477 0.96316 1.69960 1.49029 1.05122 1.29036 0.86691 0.78977 0.78266 0.84234 1.20255 1.21281 1.20373 1.22065 0.89047 1.01676 0.93681 1.21900 0.95358 1.00099 0.96429 0.91669 1.21599 0.96485 1.01805 0.95555 1.22242 1.01062 0.99701 0.96391 1.22018 0.88332 0.99008 0.98106 1.60710 1.13570 1.34607 1.22592 1.22019 1.02071 0.97586 0.84262 0.92036 0.92265 0.93334 0.95914 0.91720 0.96434 0.91921 0.95619 0.96877 0.92982 0.89886 0.95956 0.91611 0.92435 0.92418 0.91845 0.91324 0.90958 0.84861 0.90909 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.99 37.16 0.37 -1.67 16 2 C 0.05 0.70 5.55 -3.83 -0.02 0.68 16 3 N -0.53 -9.44 3.87 -234.63 -0.91 -10.35 16 4 C 0.06 1.29 4.77 -3.82 -0.02 1.27 16 5 C 0.03 0.85 5.01 -27.88 -0.14 0.71 16 6 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 7 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.06 1.04 4.18 -3.82 -0.02 1.03 16 15 C -0.12 -1.57 2.28 -90.54 -0.21 -1.77 16 16 H 0.07 0.84 6.10 -51.93 -0.32 0.52 16 17 C -0.12 -1.38 5.29 -26.61 -0.14 -1.52 16 18 C -0.15 -1.56 6.08 -26.65 -0.16 -1.72 16 19 C 0.06 0.60 6.55 -3.84 -0.03 0.58 16 20 N -0.69 -8.59 6.87 -113.82 -0.78 -9.37 16 21 C 0.07 1.01 5.72 -3.83 -0.02 0.99 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 26 H 0.06 0.86 5.87 -51.93 -0.30 0.55 16 27 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 28 H 0.06 1.32 6.24 -51.93 -0.32 0.99 16 29 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.01 0.36 6.95 -51.93 -0.36 0.00 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.08 1.55 6.71 -51.93 -0.35 1.20 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.33 3.71 8.86 -39.29 -0.35 3.36 16 41 H 0.07 1.19 8.14 -51.94 -0.42 0.77 16 42 H 0.09 1.47 7.79 -51.93 -0.40 1.06 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -29.35 321.54 -9.69 -39.04 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.77 Total: 0.37 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.79 Total: -15.02 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.95 Total: -46.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.35 -9.69 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.485 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds