Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47064 * 2 1 4 4 C 1.46909 * 110.99919 * 287.95280 * 3 2 1 5 5 C 1.53001 * 109.47111 * 160.32181 * 4 3 2 6 6 C 1.50695 * 109.47220 * 184.96716 * 5 4 3 7 7 H 1.08004 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99993 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00180 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46963 * 60.00058 * 10 8 6 12 12 H 1.48502 * 109.47102 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47129 * 300.00131 * 10 8 6 14 14 C 1.46900 * 111.00357 * 164.00042 * 3 2 1 15 15 C 1.53002 * 109.46915 * 293.95588 * 14 3 2 16 16 H 1.08997 * 109.50570 * 54.91568 * 15 14 3 17 17 C 1.53113 * 109.50516 * 174.99627 * 15 14 3 18 18 C 1.53117 * 109.16141 * 177.63097 * 17 15 14 19 19 C 1.53032 * 109.27881 * 302.34722 * 18 17 15 20 20 N 1.46846 * 109.52442 * 59.17889 * 19 18 17 21 21 C 1.46847 * 111.19647 * 298.25451 * 20 19 18 22 22 H 1.09002 * 109.47320 * 299.24294 * 1 2 3 23 23 H 1.09007 * 109.47048 * 59.24598 * 1 2 3 24 24 H 1.08999 * 109.47579 * 179.24079 * 1 2 3 25 25 H 1.09005 * 109.47187 * 239.99903 * 2 1 3 26 26 H 1.08999 * 109.46897 * 119.99953 * 2 1 3 27 27 H 1.09002 * 109.46849 * 280.31929 * 4 3 2 28 28 H 1.08991 * 109.46939 * 40.32066 * 4 3 2 29 29 H 1.09008 * 109.46928 * 304.96911 * 5 4 3 30 30 H 1.08996 * 109.47332 * 64.96257 * 5 4 3 31 31 H 0.97001 * 120.00192 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.47383 * 173.95168 * 14 3 2 33 33 H 1.09002 * 109.46898 * 53.95194 * 14 3 2 34 34 H 1.09001 * 109.52125 * 57.72910 * 17 15 14 35 35 H 1.08999 * 109.57336 * 297.57145 * 17 15 14 36 36 H 1.09004 * 109.50267 * 62.29104 * 18 17 15 37 37 H 1.09003 * 109.50489 * 182.40339 * 18 17 15 38 38 H 1.09002 * 109.46365 * 179.19799 * 19 18 17 39 39 H 1.09001 * 109.46153 * 299.15652 * 19 18 17 40 40 H 1.00896 * 110.99706 * 62.35779 * 20 19 18 41 41 H 1.08989 * 109.46422 * 301.72640 * 21 20 19 42 42 H 1.09004 * 109.45873 * 181.75204 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7965 2.0222 -1.3047 5 6 1.8475 3.5430 -1.1449 6 6 1.4985 4.1979 -2.4565 7 1 1.2634 3.5902 -3.3178 8 6 1.4783 5.5729 -2.5566 9 7 1.7632 6.3129 -1.5074 10 14 1.0464 6.3847 -4.1826 11 1 -0.3209 5.9750 -4.5926 12 1 1.0958 7.8608 -4.0275 13 1 2.0214 5.9636 -5.2205 14 6 3.4380 1.4420 0.3780 15 6 3.5958 1.0001 1.8343 16 1 3.1493 0.0145 1.9660 17 6 5.0834 0.9392 2.1917 18 6 5.2306 0.5539 3.6663 19 6 4.4836 1.5715 4.5314 20 7 3.0653 1.5915 4.1514 21 6 2.8962 2.0048 2.7525 22 1 -0.3634 0.5020 0.8967 23 1 -0.3633 0.5255 -0.8832 24 1 -0.3634 -1.0275 -0.0136 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.5717 1.7039 -2.0018 28 1 0.8196 1.7299 -1.6895 29 1 1.1324 3.8524 -0.3826 30 1 2.8513 3.8433 -0.8446 31 1 1.7493 7.2802 -1.5780 32 1 3.8030 2.4629 0.2665 33 1 4.0130 0.7780 -0.2675 34 1 5.5387 1.9151 2.0231 35 1 5.5783 0.1938 1.5693 36 1 4.8099 -0.4387 3.8268 37 1 6.2862 0.5506 3.9380 38 1 4.5745 1.2921 5.5811 39 1 4.9140 2.5616 4.3809 40 1 2.6336 0.6949 4.3184 41 1 3.3339 2.9928 2.6103 42 1 1.8340 2.0399 2.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233432616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = -39.930984 kcal Electronic energy + Delta-G solvation = -18069.962350 eV Core-core repulsion = 15468.842649 eV Total energy + Delta-G solvation = -2601.119701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32339 -38.38204 -35.28074 -33.44134 -32.44205 -32.23007 -30.03386 -26.96847 -25.55592 -24.49722 -23.32291 -22.70903 -21.31451 -20.74838 -18.52340 -16.90365 -16.74585 -16.51162 -16.31238 -15.74795 -15.53087 -15.19944 -14.81726 -14.41035 -14.12993 -13.85254 -13.68288 -13.14484 -13.05553 -13.03146 -12.79730 -12.65649 -12.44772 -12.39753 -12.26835 -12.16075 -11.79341 -11.67234 -11.47620 -11.33568 -11.16752 -11.02552 -10.52649 -9.29408 -9.03154 -8.18736 -6.30453 1.39490 1.42845 1.50772 2.40497 3.04875 3.14306 3.43603 3.74461 3.96098 4.01571 4.12106 4.13916 4.34405 4.37876 4.48656 4.50484 4.61425 4.65917 4.67830 4.72265 4.76061 4.90832 4.98364 5.04080 5.06814 5.08965 5.13735 5.16657 5.18898 5.31686 5.41661 5.47728 5.48463 5.68202 5.81690 6.12650 6.15845 6.36205 6.38561 6.59381 6.87061 7.38635 8.93068 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.005558 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.634542 B = 5036.440479 C = 5624.955500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.544 5.544 4 C 0.078 3.922 5 C 0.044 3.956 6 C -0.546 4.546 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.067 3.933 15 C -0.103 4.103 16 H 0.082 0.918 17 C -0.116 4.116 18 C -0.145 4.145 19 C 0.053 3.947 20 N -0.693 5.693 21 C 0.079 3.921 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.088 0.912 27 H 0.016 0.984 28 H 0.065 0.935 29 H -0.008 1.008 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.347 0.653 41 H 0.042 0.958 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -14.987 8.944 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.050 4.050 5 C 0.006 3.994 6 C -0.584 4.584 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.062 4.062 15 C -0.124 4.124 16 H 0.100 0.900 17 C -0.154 4.154 18 C -0.184 4.184 19 C -0.076 4.076 20 N -0.322 5.322 21 C -0.051 4.051 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.106 0.894 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.010 0.990 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.061 0.939 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.167 -13.913 9.626 17.424 hybrid contribution 0.642 -0.180 -2.031 2.137 sum 4.809 -14.092 7.595 16.715 Atomic orbital electron populations 1.21751 0.94616 1.01935 1.01680 1.22190 0.96558 0.88370 1.00809 1.62032 1.17714 1.17404 1.29708 1.21999 0.99186 0.95464 0.88312 1.18822 0.94549 0.90873 0.95127 1.21614 1.47133 0.92214 0.97488 0.92326 1.25950 0.95031 0.98200 1.00363 1.70110 1.49941 1.05495 1.31566 0.85513 0.79225 0.77083 0.79283 1.19080 1.20794 1.19214 1.22039 0.88233 0.99918 0.96006 1.21786 0.96737 1.00098 0.93763 0.89970 1.21603 0.94924 1.01461 0.97414 1.22174 1.02083 0.99838 0.94354 1.22086 0.87203 0.98781 0.99545 1.60637 1.15102 1.35578 1.20834 1.21744 1.00509 0.96690 0.86122 0.92693 0.94163 0.90277 0.95361 0.89399 0.96622 0.91664 0.98973 0.99609 0.92807 0.93407 0.95161 0.93166 0.91297 0.90956 0.90200 0.89154 0.92401 0.83515 0.93938 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.99 71.98 0.72 -3.05 16 2 C 0.05 1.34 5.55 86.30 0.48 1.82 16 3 N -0.54 -19.46 3.87 -896.22 -3.47 -22.93 16 4 C 0.08 3.38 4.77 86.30 0.41 3.79 16 5 C 0.04 2.41 5.01 29.85 0.15 2.56 16 6 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.07 2.21 4.18 86.30 0.36 2.57 16 15 C -0.10 -2.69 2.28 -10.74 -0.02 -2.71 16 16 H 0.08 1.90 6.10 -2.39 -0.01 1.88 16 17 C -0.12 -2.59 5.29 30.67 0.16 -2.42 16 18 C -0.15 -2.54 6.08 30.64 0.19 -2.35 16 19 C 0.05 1.07 6.55 86.32 0.57 1.64 16 20 N -0.69 -16.67 6.87 -514.02 -3.53 -20.20 16 21 C 0.08 2.35 5.72 86.33 0.49 2.84 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.21 6.52 -2.38 -0.02 1.19 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 0.77 8.05 -2.38 -0.02 0.76 16 26 H 0.09 2.06 5.87 -2.39 -0.01 2.05 16 27 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 28 H 0.06 2.78 6.24 -2.39 -0.01 2.77 16 29 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H -0.01 -0.86 6.95 -2.39 -0.02 -0.88 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.05 1.91 6.71 -2.39 -0.02 1.89 16 33 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.35 6.97 8.86 -89.70 -0.79 6.17 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 2.33 7.79 -2.39 -0.02 2.31 16 Total: -1.00 -65.24 321.54 -0.32 -65.56 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.17 Total: 14.75 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.20 Total: -26.37 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -6.72 Total: -100.97 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.24 -0.32 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233432616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.632 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds