Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46900 * 110.99772 * 288.28891 * 3 2 1 5 5 C 1.53007 * 109.47230 * 148.04639 * 4 3 2 6 6 H 1.08991 * 109.50179 * 56.28602 * 5 4 3 7 7 C 1.53117 * 109.50212 * 176.40817 * 5 4 3 8 8 C 1.53121 * 109.16021 * 177.59263 * 7 5 4 9 9 C 1.53036 * 109.28052 * 302.34738 * 8 7 5 10 10 N 1.46851 * 109.52366 * 59.17655 * 9 8 7 11 11 C 1.46849 * 111.19700 * 298.25681 * 10 9 8 12 12 C 1.46901 * 111.00193 * 164.33634 * 3 2 1 13 13 H 1.09000 * 109.46787 * 58.43111 * 12 3 2 14 14 C 1.53000 * 109.46751 * 178.43182 * 12 3 2 15 15 C 1.50698 * 109.47012 * 298.42993 * 12 3 2 16 16 H 1.08005 * 120.00195 * 359.72839 * 15 12 3 17 17 C 1.37875 * 120.00175 * 180.02562 * 15 12 3 18 18 N 1.31513 * 119.99352 * 359.72459 * 17 15 12 19 19 Si 1.86796 * 120.00186 * 179.72757 * 17 15 12 20 20 H 1.48495 * 109.47285 * 89.99886 * 19 17 15 21 21 H 1.48500 * 109.46794 * 209.99900 * 19 17 15 22 22 H 1.48497 * 109.47132 * 329.99698 * 19 17 15 23 23 H 1.08993 * 109.47715 * 305.40672 * 1 2 3 24 24 H 1.08996 * 109.47150 * 65.41075 * 1 2 3 25 25 H 1.09003 * 109.47076 * 185.40432 * 1 2 3 26 26 H 1.08994 * 109.47351 * 239.99805 * 2 1 3 27 27 H 1.09004 * 109.46834 * 119.99578 * 2 1 3 28 28 H 1.09002 * 109.47449 * 268.04595 * 4 3 2 29 29 H 1.09008 * 109.47354 * 28.04672 * 4 3 2 30 30 H 1.08996 * 109.52382 * 297.50150 * 7 5 4 31 31 H 1.09000 * 109.52662 * 57.69225 * 7 5 4 32 32 H 1.09000 * 109.50296 * 182.40054 * 8 7 5 33 33 H 1.09007 * 109.53066 * 62.30659 * 8 7 5 34 34 H 1.09003 * 109.46142 * 299.16397 * 9 8 7 35 35 H 1.08997 * 109.46555 * 179.19426 * 9 8 7 36 36 H 1.00898 * 111.00048 * 62.35292 * 10 9 8 37 37 H 1.09000 * 109.46815 * 301.73150 * 11 10 9 38 38 H 1.08998 * 109.45567 * 181.74822 * 11 10 9 39 39 H 1.09001 * 109.46497 * 173.13619 * 14 12 3 40 40 H 1.08998 * 109.47178 * 293.12951 * 14 12 3 41 41 H 1.08994 * 109.47611 * 53.13632 * 14 12 3 42 42 H 0.97003 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7893 2.0247 -1.3022 5 6 1.5366 3.5199 -1.0983 6 1 2.3758 3.9608 -0.5605 7 6 1.3854 4.2031 -2.4602 8 6 1.0732 5.6869 -2.2462 9 6 -0.1978 5.8195 -1.4042 10 7 -0.0022 5.1506 -0.1116 11 6 0.2520 3.7153 -0.2896 12 6 3.4401 1.4412 0.3703 13 1 4.0219 0.8409 -0.3292 14 6 3.9228 2.8922 0.3213 15 6 3.6174 0.8997 1.7654 16 1 2.7599 0.5529 2.3231 17 6 4.8733 0.8526 2.3322 18 7 5.9173 1.2753 1.6533 19 14 5.0920 0.1885 4.0644 20 1 5.3350 -1.2753 4.0063 21 1 6.2508 0.8575 4.7084 22 1 3.8640 0.4553 4.8556 23 1 -0.3634 0.5953 0.8375 24 1 -0.3633 0.4276 -0.9344 25 1 -0.3633 -1.0231 0.0968 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.6664 1.8874 -1.9347 29 1 0.9214 1.5715 -1.7813 30 1 2.3137 4.1036 -3.0227 31 1 0.5710 3.7358 -3.0139 32 1 0.9223 6.1699 -3.2116 33 1 1.9050 6.1631 -1.7271 34 1 -1.0321 5.3557 -1.9305 35 1 -0.4149 6.8746 -1.2380 36 1 0.7412 5.5872 0.4126 37 1 -0.5843 3.2614 -0.8212 38 1 0.3619 3.2423 0.6863 39 1 4.9387 2.9505 0.7118 40 1 3.9093 3.2450 -0.7100 41 1 3.2644 3.5149 0.9269 42 1 6.8010 1.2419 2.0519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233502243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -5.892893 kcal Electronic energy + Delta-G solvation = -18764.806982 eV Core-core repulsion = 16165.163284 eV Total energy + Delta-G solvation = -2599.643699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01825 -36.85343 -33.08420 -32.10463 -31.06233 -30.27684 -27.64306 -25.74534 -24.30470 -23.26292 -21.62834 -20.97422 -19.72858 -19.25118 -16.36832 -15.66653 -15.45525 -14.55201 -14.48503 -14.15342 -14.06430 -13.56591 -13.09029 -12.85805 -12.51882 -12.20747 -11.94056 -11.81561 -11.49365 -11.16066 -11.08760 -10.97811 -10.94563 -10.76881 -10.66943 -10.60068 -10.17069 -10.04337 -9.91378 -9.81077 -9.41754 -8.87934 -8.35997 -8.04947 -7.11455 -5.99626 -4.04450 3.30790 3.37723 3.42036 4.41606 4.60593 4.83443 5.03224 5.15018 5.29232 5.33895 5.40691 5.65340 5.70912 5.78678 5.83145 5.90921 6.01226 6.07120 6.09245 6.13016 6.20814 6.25970 6.30498 6.42313 6.52080 6.68467 6.77025 6.78107 6.85571 6.88468 7.03276 7.16323 7.34266 7.52115 7.65369 7.78434 7.84872 8.26156 8.37234 8.63371 9.03294 9.60749 11.06324 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.006999 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.369461 B = 3999.796268 C = 4373.896212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.530 5.530 4 C 0.065 3.935 5 C -0.132 4.132 6 H 0.096 0.904 7 C -0.115 4.115 8 C -0.155 4.155 9 C 0.058 3.942 10 N -0.690 5.690 11 C 0.074 3.926 12 C 0.214 3.786 13 H -0.005 1.005 14 C -0.134 4.134 15 C -0.499 4.499 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.014 0.986 27 H 0.086 0.914 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.339 0.661 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.011 0.989 41 H 0.034 0.966 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 4.999 -6.597 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.255 5.255 4 C -0.064 4.064 5 C -0.152 4.152 6 H 0.114 0.886 7 C -0.153 4.153 8 C -0.195 4.195 9 C -0.073 4.073 10 N -0.318 5.318 11 C -0.055 4.055 12 C 0.108 3.892 13 H 0.013 0.987 14 C -0.192 4.192 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.887 5.190 -6.084 12.716 hybrid contribution 1.725 -0.803 -0.231 1.917 sum -8.162 4.387 -6.314 11.213 Atomic orbital electron populations 1.21820 0.96768 1.00204 1.01303 1.21951 0.93867 0.90643 1.00794 1.62129 1.22113 1.15400 1.25821 1.21959 0.98727 0.94009 0.91716 1.22277 1.00836 0.96310 0.95775 0.88611 1.21596 1.00946 0.94836 0.97928 1.22241 0.99430 0.97162 1.00635 1.21980 0.96473 0.98764 0.90040 1.60753 1.49572 1.04219 1.17255 1.21953 0.94897 0.87236 1.01416 1.19247 0.81073 0.93402 0.95509 0.98720 1.22006 1.03396 0.97349 0.96452 1.21159 0.92945 1.40329 0.99356 0.91903 1.24932 0.95983 0.95630 0.97783 1.69893 0.98873 1.47404 1.37212 0.86551 0.77706 0.78834 0.84650 1.20862 1.21336 1.19824 0.92129 0.93946 0.93586 0.96819 0.89589 0.95552 0.92902 0.92514 0.92649 0.92210 0.92115 0.91500 0.91510 0.84349 0.92423 0.89058 0.89733 0.97016 0.94657 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 37.16 0.37 -1.88 16 2 C 0.06 1.08 5.45 -3.83 -0.02 1.06 16 3 N -0.53 -10.94 3.67 -228.03 -0.84 -11.78 16 4 C 0.07 1.17 3.83 -3.82 -0.01 1.16 16 5 C -0.13 -2.12 1.98 -90.53 -0.18 -2.29 16 6 H 0.10 1.75 4.16 -51.93 -0.22 1.53 16 7 C -0.11 -1.57 5.29 -26.61 -0.14 -1.72 16 8 C -0.16 -1.86 6.08 -26.65 -0.16 -2.03 16 9 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 10 N -0.69 -9.69 6.87 -113.81 -0.78 -10.47 16 11 C 0.07 1.15 5.70 -3.83 -0.02 1.13 16 12 C 0.21 5.29 1.87 -68.86 -0.13 5.16 16 13 H 0.00 -0.13 8.14 -51.93 -0.42 -0.56 16 14 C -0.13 -3.19 7.36 37.16 0.27 -2.91 16 15 C -0.50 -13.45 7.71 -34.44 -0.27 -13.71 16 16 H 0.06 1.70 6.94 -52.48 -0.36 1.33 16 17 C 0.06 1.57 5.28 -17.82 -0.09 1.48 16 18 N -0.89 -25.37 11.30 55.43 0.63 -24.74 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.04 0.62 6.74 -51.93 -0.35 0.27 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 27 H 0.09 1.83 6.25 -51.93 -0.32 1.50 16 28 H 0.03 0.51 7.51 -51.93 -0.39 0.12 16 29 H 0.05 0.87 6.25 -51.92 -0.32 0.55 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.34 4.71 8.86 -39.29 -0.35 4.37 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.63 7.74 -51.93 -0.40 1.23 16 39 H 0.08 2.25 5.92 -51.93 -0.31 1.94 16 40 H 0.01 0.24 5.98 -51.93 -0.31 -0.07 16 41 H 0.03 0.81 7.23 -51.93 -0.38 0.44 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -27.16 311.05 -9.23 -36.39 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.49 Total: 3.60 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.41 Total: -13.90 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.99 Total: -46.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.16 -9.23 -36.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233502243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.495 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds